GEO Browser - GEO

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302 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		HIC
GSE63525	A three-dimensional map of the human genome at kilobase resolution reveals prinicples of chromatin looping	Other	Homo sapiens Mus musculus	200	BED HIC RTF TXT SRA Run Selector	Suhas Rao	Dec 11, 2014
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE112222	BAZ2A safeguards genome architecture of ground-state pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	49	BED BW CSV HIC SRA Run Selector	Raffaella Santoro	Oct 20, 2020
GSE112717	Enhancer-dependence of gene expression increases with developmental age	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED BW HIC TXT SRA Run Selector	Jialiang Huang	Aug 19, 2020
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BED BEDGRAPH BW HIC XLS XLSX SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE116791	Serial Inversions Induce Tissue-specific Architectural Stripes, Gene Misexpression and Congenital Malformations [Hi-C]	Other	Mus musculus	3	BED HIC SRA Run Selector	Andreas Magg	Nov 19, 2018
GSE119171	Long-range epigenetic concordance revealed by simultaneous profiling of DNA methylation and chromosomal conformation changes in bulk and single cell Methyl-HiC	Methylation profiling by high throughput sequencing Other	Mus musculus	48	BED HIC TXT SRA Run Selector	Guoqiang Li	Nov 16, 2018
GSE119663	MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BW HIC NARROWPEAK SRA Run Selector	Miao Yu	Apr 05, 2019
GSE120771	Selective Disruption of Core Regulatory Transcription	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	109	BED HIC TXT	Xinyu Wen	May 31, 2019
GSE121791	Single-cell chromatin conformation capture of mouse sensory neurons in visual and olfactory systems by Dip-C	Other	Mus musculus	409	BED HIC TXT SRA Run Selector	Longzhi Tan	Feb 04, 2019
GSE122977	Analysis of 3D interactions identifies candidate host genes that transposable elements potentially regulate	Other	Homo sapiens Mus musculus	24	BED BEDGRAPH HIC	Ramya Raviram	Nov 28, 2018
GSE123670	CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	187	BED BW HIC	ya wei song	Apr 05, 2022
GSE125318	Epigenomic analysis of gastrulation identifies a unique chromatin state for primed pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	104	BED HIC TXT SRA Run Selector	Wei Xie	Dec 18, 2019
GSE126362	Pax3 cooperates with Ldb1 to direct local chromosome architecture during lineage specification	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	60	BED HIC SRA Run Selector	Alessandro Magli	Apr 16, 2019
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE138822	The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	38	BED BEDPE BIGWIG CSV HIC TXT SRA Run Selector	Jared V Goodman	Apr 13, 2020
GSE139483	N1E-115 cells and sorted NOS1+ mouse enteric neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	86	BED CEL HIC	Tamas Ordog	Feb 14, 2024
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Meinrad Busslinger	Jul 01, 2020
GSE145147	A role of the CTCF binding site at enhancer Ea in Tcra rearrangement	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	40	BED BEDGRAPH BW CSV HIC SRA Run Selector	Hao bingtao	Feb 13, 2020