GEO Browser - GEO

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293 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		HIC
GSE63525	A three-dimensional map of the human genome at kilobase resolution reveals prinicples of chromatin looping	Other	Homo sapiens Mus musculus	200	BED HIC RTF TXT SRA Run Selector	Suhas Rao	Dec 11, 2014
GSE71831	Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing	Other Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	101	HIC PDF TSV TXT SRA Run Selector	Miriam Huntley	Jul 19, 2016
GSE80820	HiChIP: Efficient and sensitive analysis of protein-directed genome architecture	Other	Homo sapiens Mus musculus	18	HIC TXT SRA Run Selector	Ryan Alexander Flynn	Aug 31, 2016
GSE82144	Myc regulates chromatin decompaction and nuclear architecture during B cell activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	258	BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 10, 2017
GSE94452	Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	174	HIC	Bing Ren	May 01, 2018
GSE95112	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture [Hi-C]	Other	Mus musculus	4	HIC SRA Run Selector	Bo Wen	Dec 03, 2017
GSE95116	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BW HIC TXT	Bo Wen	Dec 03, 2017
GSE96692	Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure [HiC-seq]	Other	Mus musculus	3	HIC SRA Run Selector	Tom Vondriska	Aug 30, 2017
GSE96693	Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	17	GTF HIC NARROWPEAK	Tom Vondriska	Aug 30, 2017
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE104341	The Peril DNA locus acts as an in vivo enhancer for distal but not proximal genes	Expression profiling by high throughput sequencing Other	Mus musculus synthetic construct	30	HIC TAB TXT SRA Run Selector	Abbie Groff	Nov 02, 2018
GSE107217	Xist Deletional Analysis Reveals an Interdependency between Xist RNA and Polycomb Complexes for Spreading along the Inactive X	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	50	BW HIC TXT SRA Run Selector	Hongjae Sunwoo	Mar 01, 2019
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE110898	Enhancer remodeling overcomes therapeutic resistance driven by epigenetic evolution in cancer [HiChIP]	Other	Mus musculus	2	HIC SRA Run Selector	Mark Dawson	May 21, 2019
GSE110901	Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	HIC NARROWPEAK	Mark Dawson	May 21, 2019
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE112222	BAZ2A safeguards genome architecture of ground-state pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	49	BED BW CSV HIC SRA Run Selector	Raffaella Santoro	Oct 20, 2020
GSE112717	Enhancer-dependence of gene expression increases with developmental age	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED BW HIC TXT SRA Run Selector	Jialiang Huang	Aug 19, 2020
GSE115524	HiChIRP reveals RNA-associated chromosome conformation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	42	BIGWIG HIC TXT SRA Run Selector	Howard Y Chang	Dec 04, 2018
GSE115862	Antisense lncRNA transcription mediates DNA demethylation to drive stochastic Protocadherin α promoter choice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	72	BW HIC SRA Run Selector	Daniele Canzio	Apr 15, 2019