GEO Browser - GEO

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67 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		COOL
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE161378	DBX2 REGULATION IN LIMBS SUGGESTS INTER-TAD SHARING OF ENHANCERS [HiC reanalysis]	Other Third-party reanalysis	Gallus gallus Mus musculus		BED COOL TXT	Lucille Lopez-Delisle	Jan 23, 2021
GSE194423	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [Hi-C]	Other	Gallus gallus Mus musculus	2	BED COOL TXT	Aurelie Hintermann	Jun 20, 2022
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE167200	DeepLoop enables robust mapping of DNA loops from low-depth single cell or allele-resolved Hi-C data at high resolution	Other Third-party reanalysis	Homo sapiens Mus musculus	15	COOL TXT WIG XLSX SRA Run Selector	Shanshan Zhang	Mar 14, 2022
GSE175836	Granulosa cell mevalonate pathway abnormalities contribute to oocyte meiotic defects and aneuploidy	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	97	COOL TXT	Qian Bian	Feb 26, 2023
GSE196497	MCM complexes are barriers that restrict cohesin-mediated loop extrusion	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	115	COOL H5	Bart Johan H Dequeker	Mar 07, 2022
GSE196621	Transcription shapes 3D chromatin organization by interacting with loop-extruding cohesin complexes	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	46	BEDGRAPH BW COOL	Roman R Stocsits	Mar 13, 2023
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE199007	SATB1 Regulates 3D Genome Architecture in T cells by Constraining Chromatin Interactions surrounding CTCF-binding sites	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	36	BED BW COOL TXT	bao wang	Mar 05, 2023
GSE232887	A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED BW COOL HIC NARROWPEAK	Marco Osterwalder	Jun 01, 2024
GSE98671	Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	102	BED BW COOL FASTA TXT SRA Run Selector	Elphege Nora	May 25, 2017
GSE100569	A Mechanism of Cohesin-Dependent Loop Extrusion Organizes Zygotic Genome Architecture	Other	Mus musculus	144	COOL SRA Run Selector	Johanna Gassler	Aug 25, 2017
GSE111032	Heterochromatin drives organization of conventional and inverted nuclei	Other	Mus musculus	8	COOL SRA Run Selector	Martin Jin-teng Falk	Feb 22, 2019
GSE119805	Attenuated chromatin compartmentalization in meiosis and its maturation in sperm development	Other Third-party reanalysis	Mus musculus	5	COOL TXT SRA Run Selector	Satoshi H Namekawa	Feb 18, 2019
GSE122157	Condensin II inactivation in interphase does not affect chromatin folding or gene expression	Other Expression profiling by high throughput sequencing	Mus musculus	6	BW COOL XLSX SRA Run Selector	Nezar Abdennur	May 05, 2019
GSE130585	Ovulation suppression prevents the increase in egg aneuploidy with maternal age in mammals	Other	Mus musculus	67	COOL SRA Run Selector	Kikuë Tachibana	Apr 01, 2021
GSE132264	Wapl-mediated release of Scc1-cohesin regulates chromosome structure and segregation in mouse oocytes	Other	Mus musculus	131	COOL SRA Run Selector	Kikuë Tachibana	Mar 04, 2020
GSE133760	Hierarchical enhancers 1 confer the temporal and partially compensatory transcriptional regulation of Nkx2-5 during heart development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BW COOL TXT SRA Run Selector	Yaxi Liu	Jul 03, 2022
GSE150704	Spatial Organization of Transcribed Eukaryotic Genes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	COOL SRA Run Selector	Job Dekker	Nov 30, 2021