GEO Browser - GEO

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1808 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		BEDGRAPH
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE45242	HoxD locus	Other Genome binding/occupancy profiling by genome tiling array Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Atelerix albiventris Mus musculus	32	BAR BED BEDGRAPH BW CEL	Marion LELEU	Oct 23, 2013
GSE53387	Mammalian embryo comparison identifies novel pluripotency genes associated with the naïve or primed state	Expression profiling by high throughput sequencing	Bos taurus Mus musculus Sus scrofa	34	BEDGRAPH WIG SRA Run Selector	Hendrik Marks	Aug 14, 2018
GSE136554	Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications	Other	Branchiostoma lanceolatum Danio rerio Mus musculus	12	BEDGRAPH SRA Run Selector	Rafael Domínguez Acemel	Mar 23, 2021
GSE78111	CELF RNA binding proteins promote axon regeneration in C. elegans and mouse through regulation of syntaxin	Other	Caenorhabditis elegans Mus musculus	2	BEDGRAPH SRA Run Selector	Bing Zhou	Jun 02, 2016
GSE85747	Initiation of mtDNA transcription is followed by pausing, and diverge across human cell types and during evolution	Expression profiling by high throughput sequencing Third-party reanalysis	Caenorhabditis elegans Drosophila melanogaster Homo sapiens Macaca mulatta Mus musculus Pan troglodytes Rattus norvegicus		BEDGRAPH XLS	Dan Mishmar	Sep 30, 2016
GSE47644	Conservation and divergence of regulatory strategies and the origin of tetrapod digits	Other	Danio rerio Mus musculus	32	BEDGRAPH SRA Run Selector	Marion LELEU	Jan 21, 2014
GSE52830	Obesity-associated variants within FTO form long-range functional connections with IRX3	Other	Danio rerio Mus musculus	6	BEDGRAPH SRA Run Selector	Juan J. Tena	Feb 24, 2014
GSE66900	Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders	Other	Danio rerio Mus musculus Strongylocentrotus purpuratus	63	BEDGRAPH SRA Run Selector	Carlos Gómez	May 18, 2015
GSE184036	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	155	BEDGRAPH BROADPEAK HDF5 NARROWPEAK TSV	Jop Kind	Apr 01, 2022
GSE185283	Time-resolved RNA sequencing reveals distinct post-transcriptional regimes during zebrafish embryogenesis	Expression profiling by high throughput sequencing Other	Danio rerio Mus musculus	72	BEDGRAPH TSV TXT SRA Run Selector	Stefan Ludwig Ameres	Dec 31, 2022
GSE32192	Study of Huntington disease by analyzing RNA-Seq data using fly and mouse models	Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	7	BEDGRAPH SRA Run Selector	hao zhao	Sep 05, 2014
GSE78984	MNase titration reveals differences between nucleosome occupancy and chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	74	BEDGRAPH SRA Run Selector	Michael Tolstorukov	Apr 18, 2016
GSE85191	Widespread transcriptional pausing and elongation control at enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	37	BEDGRAPH BW SRA Run Selector	Karen Adelman	Mar 09, 2018
GSE120220	Harnessing enhanced nucleotide chemistry and toehold nanotechnology to reveal lncRNA spreading on chromatin	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	34	BED BEDGRAPH BIGWIG	Matthew D Simon	Mar 11, 2020
GSE147879	Two competing mechanisms of DNMT3A recruitment regulate the dynamics of de novo DNA methylation at CpG islands	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	78	BED BEDGRAPH BW SRA Run Selector	Jacek Majewski	May 13, 2021
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE43520	The evolution of lncRNA repertoires and expression patterns in tetrapods	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Gallus gallus Gorilla gorilla Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	55	BEDGRAPH TXT SRA Run Selector	Anamaria Necsulea	Jan 19, 2014
GSE115559	Similarities and differences in the regulation of HoxD genes during chick and mouse limb development [RNA-Seq]	Expression profiling by high throughput sequencing	Gallus gallus Mus musculus	9	BEDGRAPH SRA Run Selector	Nayuta Yakushiji-Kaminatsui	Nov 27, 2018