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5089 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		BED
GSE69180	1,25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium Regulating Components	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH TXT	Mark B Meyer	Jun 03, 2015
GSE69179	1,25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium Regulating Components (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH SRA Run Selector	Mark B Meyer	Jun 03, 2015
GSE33923	2C::tomato ES cells, 2-cell embryos and wild type oocytes	Expression profiling by high throughput sequencing	Mus musculus	16	BED CEL	Todd Macfarlan	Jun 18, 2012
GSE228930	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_Omni-C]	Other	Mus musculus	6	BED MTX	Gordon K Smyth	Sep 08, 2023
GSE228954	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [T8_Omni-C]	Other	Mus musculus	6	BED MTX	Gordon K Smyth	Sep 08, 2023
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE77645	4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	16	BED BEDGRAPH TXT SRA Run Selector	Jane Skok	Feb 27, 2016
GSE52281	4C-seq indicate interactive sites with the sequence close from Meis2 promoter	Other	Mus musculus	1	BED WIG SRA Run Selector	Takaho A. Endo	Jan 15, 2014
GSE243476	4DNES18BMU79 - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243477	4DNES425UDGS - Replicate experiments of in situ Hi-C on immediate neuronal precursor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243478	4DNES54YB6TQ - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243479	4DNESEPDL6KY - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243480	4DNESH4UTRNL - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243481	4DNESNYBDSLY - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243482	4DNESRE7AK5U - Replicate experiments of in situ Hi-C on globose cell of olfactory epithelium with DpnII	Other	Mus musculus	1	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE40167	5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	795	BED CEL	Shraddha Pai	Aug 24, 2012
GSE40166	5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary (tiling array)	Methylation profiling by genome tiling array	Homo sapiens Mus musculus	786	BED CEL	Shraddha Pai	Aug 24, 2012
GSE31343	5-hydroxymethylcytosine: the sixth DNA base	Methylation profiling by high throughput sequencing	Mus musculus	5	BED SRA Run Selector	H.G. Stunnenberg	Nov 24, 2011
GSE114121	5C-ID: Increased resolution Chromosome-Conformation-CaptureCarbon-Copy with in situ 3C and double alternating primer design	Other	Mus musculus	7	BED TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 07, 2018
GSE131902	5hmC RNA role in mouse Embryonic stem cell differentiation to Embryonic bodies	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	57	BED TXT	Martin Bizet	Jul 16, 2020