GEO Browser - GEO

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1278 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247		Mus musculus		XLSX
GSE125203	Chromatin accessibility landscape upon induction of Msgn1, Pax3 and Myf5 in mesodermal cells and identification of conserved Pax3 binding sites and target genes during skeletal myogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BED XLSX SRA Run Selector	Alessandro Magli	Feb 26, 2019
GSE142519	BACH1 Recruits NANOG and Histone H3 Lysine 4 Methyltransferase MLL/SET1 Complexes to Regulate Enhancer-promoter Activity and Maintains Pluripotency	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED BROADPEAK NARROWPEAK XLSX SRA Run Selector	Siqing Wang	Jan 12, 2021
GSE150677	Nascent RNA antagonises the interaction of a set of regulatory proteins with chromatin	Other Expression profiling by high throughput sequencing	Mus musculus	34	BED XLSX SRA Run Selector	Richard Jenner	Jun 23, 2021
GSE158460	Dnmt1 has global de novo methylation activity and is specifically targeted to transposable elements	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	90	BED BW CSV XLSX SRA Run Selector	Helene Kretzmer	Jun 18, 2021
GSE161570	KMT2C Loss Promotes Small Cell Lung Cancer Metastasis through DNMT3A-mediated Epigenetic Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	55	BED BW CGMAP CSV GAPPEDPEAK TAR XLSX SRA Run Selector	Xaingyu Pan	Feb 23, 2022
GSE168129	Mutations in BCOR, a novel co-repressor of OTX2/CRX, cause pediatric inherited retinal degeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BIGWIG TXT XLSX SRA Run Selector	Awais Javed	Sep 10, 2022
GSE169262	Identification of a modular super-enhancer in murine retinal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	43	BED BW MTX TSV TXT XLS XLSX SRA Run Selector	Victoria Honnell	Nov 16, 2021
GSE171371	m6A-meRIP sequencing	Other	Mus musculus	6	BED XLSX SRA Run Selector	Yanyun Wang	Apr 09, 2021
GSE179210	Genome-wide CRISPR screen reveals a key role for integrin avb3 in TH2 cell polarisation.	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	33	BED XLSX	Alastair Crisp	Nov 02, 2022
GSE197548	A satellite DNA array barcodes chromosome 7 and regulates totipotency via ZFP819	Expression profiling by high throughput sequencing Other	Mus musculus	43	BED BW XLSX	Helen M. Rowe	Oct 31, 2022
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED CSV H5 HIC MTX TBI TSV XLSX	Vittorio Sartorelli	Jul 31, 2022
GSE204980	Exclusion of m6A from splice-site-proximal regions by the exon-junction complex dictates m6A topologies and mRNA stability	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	250	BED CSV RDATA RDS XLSX	Anna Uzonyi	Jan 02, 2023
GSE207163	Transcriptional repression by a secondary DNA binding surface of DNA topoisomerase I safeguards against hypertranscription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BED BW RESULTS TXT XLSX	Zhenhua hu	May 29, 2023
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE216371	A single-cell atlas of chromatin accessibility in mouse organogenesis	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	68	BED XLSX	Keyong Sun	Apr 14, 2024
GSE219097	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress [Bru-seq and BruUV-seq]	Other	Mus musculus	36	BED BIGWIG CSV NARROWPEAK XLSX	Brian Magnuson	Aug 30, 2023
GSE225372	Distinct disease mutations in DNMT3A result in a spectrum of behavioral, epigenetic, and transcriptional disruptions	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	100	BED CSV XLSX	Diana Christian Beard	Nov 08, 2023
GSE228445	Dermal and hypodermal macrophages and dendritic cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	42	BED CSV MTX TSV XLSX	Keisuke Nagao	Sep 06, 2023
GSE228660	An atlas of gene regulatory networks for T memory cells in youth and old age [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED MTX RDS TSV XLSX	Joseph Wayman	Aug 07, 2023