GEO Browser - GEO

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56 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417		Mus musculus		BEDGRAPH
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE66092	PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage.	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BED BEDGRAPH TXT SRA Run Selector	Hun-Way Hwang	Feb 19, 2016
GSE71154	m6A-CLIP identified major presence of m6A in last exons	Other	Homo sapiens Mus musculus	8	BED BEDGRAPH TXT SRA Run Selector	Shengdong Ke	Sep 28, 2015
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019
GSE181609	Telomere-specific chromatin capture using a pyrrole–imidazole polyamide probe for the identification of proteins and non-coding	Other	Homo sapiens Mus musculus	24	BEDGRAPH TXT	Satoru Ide	Oct 10, 2021
GSE197404	Combinatorial effects on gene expression at the Lbx1/Fgf8 locus resolve Split-Hand/Foot Malformation type 3	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	44	BEDGRAPH WIG	Giulia Cova	Feb 22, 2023
GSE202039	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [MutPE]	Other	Homo sapiens Mus musculus	36	BEDGRAPH	Maximilian Christian von der Linde	Jun 22, 2024
GSE43390	Pausing of RNA polymerase II regulates mammalian developmental potential	Expression profiling by high throughput sequencing Other	Mus musculus	12	BEDGRAPH BW SRA Run Selector	Karen Adelman	Mar 12, 2015
GSE46748	Obesity, rather than diet, drives epigenomic alterations in colonic epithelium resembling cancer progression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BEDGRAPH SRA Run Selector	ruifang li	Jan 16, 2014
GSE58339	A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential	Expression profiling by high throughput sequencing	Mus musculus	12	BEDGRAPH SRA Run Selector	Jennifer Mitchell	Nov 19, 2014
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE83757	NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers (chromatin)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BEDGRAPH BIGWIG SRA Run Selector	Hironori Waki	Aug 14, 2017
GSE86964	Target enrichment followed by high throughput sequencing of telomeric DDRNAs in telomere-deprotected mouse cells	Non-coding RNA profiling by high throughput sequencing	Mus musculus	6	BEDGRAPH FA SRA Run Selector	Fabrizio d'Adda di Fagagna	May 10, 2017
GSE94030	Circularized RNA sequencing of wild-type and Mrpp3 knock out mouse heart mitochondria	Other	Mus musculus	8	BEDGRAPH SRA Run Selector	Stefan J Siira	Mar 23, 2017
GSE95826	Tcrd rearrangement redirects a processive Tcra recombination program to expand the Tcra repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH TXT SRA Run Selector	Zachary Carico	Jun 06, 2017
GSE97148	Clonally stable Vκ allelic choice instructs Igκ repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BEDGRAPH TXT SRA Run Selector	Yehudit Bergman	Apr 01, 2017
GSE103247	Qki5 CLIP in E14.5 mouse brain	Expression profiling by high throughput sequencing	Mus musculus	1	BED BEDGRAPH SRA Run Selector	Masato Yano	Dec 08, 2017
GSE103248	RNAseq in control and shQk KD mouse neural stem cells, and Qki5 CLIP in E14.5 mouse brain	Expression profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH TXT	Masato Yano	Dec 08, 2017
GSE113022	CTCF-Binding Elements Mediate Accessibility of RAG Substrates During Chromatin Scanning [dataset 3]	Other	Mus musculus	35	BEDGRAPH SRA Run Selector	Suvi Jain	Jul 03, 2018