GEO Browser - GEO

Series

Samples

Platforms

DataSets

80 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417		Mus musculus		BED
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE66092	PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage.	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BED BEDGRAPH TXT SRA Run Selector	Hun-Way Hwang	Feb 19, 2016
GSE71154	m6A-CLIP identified major presence of m6A in last exons	Other	Homo sapiens Mus musculus	8	BED BEDGRAPH TXT SRA Run Selector	Shengdong Ke	Sep 28, 2015
GSE77788	Phosphatidylinositol 3-Kinase (PI3K) delta blockade increases genomic instability in B cells	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	162	BED TXT SRA Run Selector	Roberto Chiarle	Jan 31, 2017
GSE81255	Nfib promotes Metastasis through a Widespread Increase in Chromatin Accessibility [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BROADPEAK BW CSV SRA Run Selector	William Greenleaf	May 10, 2016
GSE86464	HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons	Expression profiling by array Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	124	BED BW CEL CSV	Gene Yeo	Oct 20, 2016
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE145257	Identification of active gene regulatory elements in the human and murine TBX3 locus	Other	Homo sapiens Mus musculus	19	BED BIGWIG SRA Run Selector	Vincent M. Christoffels	Jul 20, 2020
GSE202791	ATAC-seq Optimization for Cancer Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BED BIGWIG	Archana Dhasarathy	May 14, 2022
GSE256232	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BIGWIG	Ruitu Lyu	Jun 20, 2024
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE43247	ChIP-seq analysis of PHF20 and Wdr5 binding sites in ESCs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED SRA Run Selector	Stephen D Ayers	Dec 06, 2013
GSE44935	The Role of Tet1 During Somatic Cell Reprogramming	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Lihui Lin	Mar 08, 2013
GSE46748	Obesity, rather than diet, drives epigenomic alterations in colonic epithelium resembling cancer progression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BEDGRAPH SRA Run Selector	ruifang li	Jan 16, 2014
GSE49137	INO80 complex in the core regulatory network governing ESC self-renewal [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED BW SRA Run Selector	Li Wang	May 16, 2014
GSE52281	4C-seq indicate interactive sites with the sequence close from Meis2 promoter	Other	Mus musculus	1	BED WIG SRA Run Selector	Takaho A. Endo	Jan 15, 2014
GSE54863	FIREWACh: High-throughput Functional Detection of Transcriptional Regulatory Modules in Mammalian Cells	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED SRA Run Selector	Matthew Murtha	Mar 22, 2014
GSE61247	ChIP-seq profiling of loci bound by HIF1a in wild-type E12.5 hearts	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED SRA Run Selector	Alexander C Zambon	Apr 29, 2015
GSE62050	High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq using drop-based microfluidics	Expression profiling by high throughput sequencing	Mus musculus	6	BED TXT SRA Run Selector	oren ram	Jun 05, 2015
GSE64749	Chromatin interaction analysis of transcription factors and NLRP3 in CD4+ T cells differentiated from wild-type and NLRP3KO mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Romain Boidot	May 12, 2015