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3634 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					WIG
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE59123	Identification of Hfq bound RNA by co-immunoprecipitation and RNA-sequencing	Expression profiling by high throughput sequencing	Agrobacterium tumefaciens	8	WIG SRA Run Selector	Konrad U. Förstner	Dec 04, 2014
GSE29978	Transcriptome of the demosponge Amphimedon queenslandica at life cycle transitions	Expression profiling by high throughput sequencing	Amphimedon queenslandica	11	WIG SRA Run Selector	Cecilia Conaco	Jul 10, 2012
GSE120401	DNA methylome of pineapple	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Ananas comosus	8	TXT WIG SRA Run Selector	Haifeng Wang	Sep 27, 2018
GSE59773	Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anopheles gambiae	5	BED FPKM_TRACKING GTF WIG SRA Run Selector	Elena Gómez-Díaz	Sep 04, 2014
GSE25446	Genome-wide comparison of H3K27me3 difference between ref6-1 and wild type Col	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	TXT WIG SRA Run Selector	Falong Lu	May 25, 2011
GSE25447	Jumonji C domain-containing protein 12 is a Histone H3 Lysine 27 Demethylase	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	CEL TXT WIG	Falong Lu	May 25, 2011
GSE33071	Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	WIG SRA Run Selector	Jian-Kang Zhu	Jun 17, 2012
GSE35315	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	TXT WIG SRA Run Selector	Eunkyoo Oh	Jul 08, 2012
GSE36629	Dynamic Deposition of the Histone H3.3 Variant Accompanies Developmental Remodeling of Arabidopsis Transcriptome (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	16	WIG SRA Run Selector	Pierre-Étienne Jacques	May 16, 2012
GSE36631	Dynamic Deposition of the Histone H3.3 Variant Accompanies Developmental Remodeling of Arabidopsis Transcriptome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20	TAB WIG	Pierre-Étienne Jacques	May 16, 2012
GSE37075	Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons	Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing	Arabidopsis thaliana	8	PAIR WIG	Hume Stroud	Mar 02, 2013
GSE37160	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT WIG	Eunkyoo Oh	Jul 08, 2012
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE39024	Deep sequencing of small RNAs	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	WIG SRA Run Selector	Motoaki Seki	Jul 13, 2017
GSE39033	Deep sequencing of uncapped RNA in rdr1/2/6 and wild-type Arabidopsis plants	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	WIG SRA Run Selector	Motoaki Seki	Jul 13, 2017
GSE39037	Deep sequencing of small and uncapped RNA in rdr1/2/6 and wild-type Arabidopsis plants	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	8	BED WIG	Motoaki Seki	Jul 13, 2017
GSE39051	Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein， regulates plant flowering by targeted alternative polyadenylation	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	8	BED WIG SRA Run Selector	xiaofeng cao	Jun 30, 2015
GSE39247	The DDR complex facilitates the genome-wide association of RNA Polymerase V to promoters and evolutionarily young transposons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	11	WIG SRA Run Selector	Christopher Joel Hale	Aug 05, 2012
GSE39901	Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	92	WIG SRA Run Selector	Hume Stroud	Jan 11, 2013