GEO Browser - GEO

Series

Samples

Platforms

DataSets

268 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					TBI
GSE273764	Long-range Atoh1 enhancers maintain competency for hair cell regeneration in the inner ear	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Anolis carolinensis Danio rerio	4	BIGWIG H5 TBI TSV	Tuo Shi	Nov 27, 2024
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE192947	A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	29	BED CSV H5 TBI	Erin Jimenez	Jul 19, 2022
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20	BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE261907	Common and Specific Gene Regulatory Programs in Zebrafish Caudal Fin Regeneration at Single-Cell Resolution	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio	20	MTX TBI TSV	Ting Wang	Nov 01, 2024
GSE268179	Large-scale screen of novel zebrafish retinal ganglion cell ablation model reveals genetic regulation of retinal regeneration is context specific	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	20	H5 MTX TBI TSV	Kevin Emmerich	May 27, 2024
GSE141538	Zygotic pioneer factor activity of Odd-paired/Zic is necessary for establishing the Drosophila Segmentation Network	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	51	BED BEDGRAPH TBI TXT WIG SRA Run Selector	Shelby A Blythe	Feb 01, 2020
GSE240043	Single-cell-level gene expression and chromatin accessibility profiles of cells isolated from Drosophila embryonic gonads	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	4	CSV MTX TBI TSV	Shu Yuan Yang	Aug 10, 2023
GSE225715	A nucleosome switch primes Hepatitis B Virus infection [Mnase-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Hepatitis B virus Homo sapiens	59	BEDGRAPH TBI	Andres Mansisidor	Mar 03, 2023
GSE225716	A nucleosome switch primes Hepatitis B Virus infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Hepatitis B virus Homo sapiens	101	BEDGRAPH BW TBI	Andres Mansisidor	Mar 03, 2023
GSE123577	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [PBMC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123578	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [Blood]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	28	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123580	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [Bone marrow]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123581	Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	82	CSV TBI TSV	Caleb Lareau	May 02, 2019
GSE148223	Marking the difference in acutely responding human CD8 T cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED CSV H5 MTX TBI TSV SRA Run Selector	Silvia Asuncion Fuertes Marraco	May 05, 2022
GSE148980	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (Human scATACseq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	CSV H5 TBI TSV SRA Run Selector	Remy Bosselut	Nov 25, 2020
GSE148981	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BW CSV H5 TAB TBI TSV TXT	Remy Bosselut	Nov 25, 2020
GSE151302	Single Cell Transcriptional and Chromatin Accessibility Profiling on the human adult kidneys	Expression profiling by high throughput sequencing	Homo sapiens	10	H5 TBI TSV SRA Run Selector	Yoshiharu Muto	Feb 21, 2021
GSE157691	Gain-of-function MUC5B Promoter Variant, Strongly Linked to Idiopathic Pulmonary Fibrosis, Defines an Epigenetically Poised Enhancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	24	BED BEDGRAPH MTX TBI TSV	Sarah Sasse	Dec 29, 2020
GSE161685	The IPF-associated variant in MUC5B, rs35705950, resides within an enhancer that is subject to lineage- and disease-dependent epigenetic remodeling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED MTX RDS TBI TSV	Sarah Sasse	Dec 29, 2020