GEO Browser - GEO

Series

Samples

Platforms

DataSets

1232 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					RDS
GSE199499	Single-cell chromatin accessibility profiling reveals a self-renewing muscle satellite cell state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	ARROW FPKM_TRACKING RDS	Yarui Diao	Jun 18, 2023
GSE215824	Alveolar epithelial progenitor cells drive lung regeneration via dynamic changes in chromatin topology modulated by lineage-specific Nkx2-1 activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	ARROW LOOM RDS	William Zacharias	Oct 19, 2022
GSE240583	Baf155 establishes chromatin priming to promote hematopoietic regeneration and function [single cell multiome - ATAC + GEX]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	ARROW MTX RDS TSV	Changxu Fan	Jul 09, 2024
GSE140614	Ruler elements in chromatin remodelers set nucleosome array spacing and phasing	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae Schizosaccharomyces pombe	450	BED BW CSV RDS TAB TXT SRA Run Selector	Elisa Oberbeckmann	Feb 10, 2020
GSE147672	Single-cell epigenomic identification of inherited risk loci in Alzheimer’s and Parkinson’s disease	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	162	BED BIGWIG NARROWPEAK RDS TSV SRA Run Selector	Carlos Aguilar	Jul 26, 2020
GSE154175	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [SCATAC_10X]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED CSV H5 RDS TSV WIG SRA Run Selector	Eneritz Agirre	May 21, 2021
GSE156112	Single T-cell landscape identifies tissue regeneration program in murine and human regulatory T cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BED CSV MTX RDS TSV SRA Run Selector	LIT NGS-Core	Mar 25, 2021
GSE156245	Map3k2-regulated intestinal stromal cells define a distinct intestine stem cell niche for tissue repair	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	21	BED BW MTX RDS TSV XLSX SRA Run Selector	Hongxiang Sun	Aug 15, 2020
GSE161685	The IPF-associated variant in MUC5B, rs35705950, resides within an enhancer that is subject to lineage- and disease-dependent epigenetic remodeling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED MTX RDS TBI TSV	Sarah Sasse	Dec 29, 2020
GSE163697	Decoding gene regulation in the fly brain	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	58	BED BW GFF NARROWPEAK RDATA RDS SRA Run Selector	Stein Aerts	Aug 10, 2021
GSE166547	Cell type-specific chromatin accessibility in kidney.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED CSV RDS SRA Run Selector	Jingping Yang	Sep 30, 2021
GSE167454	Neural tube closure defect: Single Cell ATAC and single cell mRNA seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX RDS TSV SRA Run Selector	Rachel Keuls	Feb 24, 2021
GSE173811	Targeting P300/CBP reveals discrete regulation of transcription and chromatin accessibility by histone acetylation [singlecellseq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED RDS SRA Run Selector	Simon J Hogg	May 11, 2021
GSE174226	High-content single-cell combinatorial indexing	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	6	BED CSV RDS TSV TXT SRA Run Selector	Ryan M Mulqueen	May 28, 2021
GSE174533	Lamin B1 deletion in myeloid neoplasms alters hematopoietic cell fate and causes Pelger-Huët nuclear anomaly	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	BED BW CSV HIC RDS SRA Run Selector	Sergei Doulatov	Mar 11, 2022
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE183765	BlCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	118	BED BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE183766	CaBl: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	171	BED BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE189502	Mutant-SETBP1 activates transcription of Myc programs to accelerate CSF3R-driven myeloproliferative neoplasms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	BED BW CSV RDS TSV TXT	Sarah Ann Carratt	May 11, 2022
GSE191064	Single-cell chromatin accessibility and lipid profiling reveals SCD1-dependent metabolic shift in adipocytes induced by bariatric surgery	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED RDS TXT	Paul D. Soloway	Dec 20, 2021