GEO Browser - GEO

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1130 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					GTF
GSE32260	Relationship between DNMT1-RNA interactions, DNA methylation and gene expression	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BSP CEL GTF WIG	Touati Benoukraf	Dec 01, 2012
GSE37169	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration	Expression profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	7	BW CEL GTF	Douglas Porter	Apr 28, 2012
GSE46120	Small RNAs and RNA chaperone Hfq in enterohemorrhagic E. coli	Expression profiling by array Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli O157:H7 Escherichia coli O157:H7 str. Sakai Escherichia coli str. K-12 substr. MG1655	12	GPR GTF TXT	Jai Justin Tree	May 22, 2014
GSE47085	Scl specifies hemogenic endothelium and inhibits cardiogenesis via primed enhancers	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	47	BW CEL GTF	Tõnis Org	Jan 01, 2015
GSE48307	Orchestrated intron retention regulates normal granulocyte differentiation	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	11	CEL GTF	william ritchie	Jun 27, 2013
GSE62486	T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	143	BED GTF TXT	Richard Jenner	Jun 08, 2016
GSE67755	Chronic haloperidol effects on gene expression and chromatin accessibility in mouse brain	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	87	BED BW CEL GTF	Yunjung Kim	Apr 10, 2016
GSE92444	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants	Expression profiling by array	Arabidopsis thaliana Oryza sativa Japonica Group Zea mays subsp. mays	8	GTF	Dong Wang	Jan 22, 2017
GSE134160	Transcriptome-wide gene expression analysis of prostate cancer (PCa) tissue specimen on a custom expression microarray	Expression profiling by array	Homo sapiens	164	GTF TSV TXT	Kristin Reiche	Jul 21, 2020
GSE20846	Transcript assembly and abundance estimation from RNA-Seq reveals thousands of new transcripts and switching among isoforms	Expression profiling by high throughput sequencing	Mus musculus	4	GTF SAM SRA Run Selector	Cole Trapnell	Apr 14, 2010
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE27243	A Transcriptomic Atlas of Mouse Neocortical Layers	Expression profiling by high throughput sequencing	Mus musculus	19	BAM GTF TSV WIG SRA Run Selector	T Grant Belgard	Aug 24, 2011
GSE29006	mRNA-seq of Human Airway Epithelial Cells	Expression profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH GTF TXT SRA Run Selector	Avrum Spira	Jun 01, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE32038	Differential Gene and Transcript Expression Analysis with TopHat and Cufflinks	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BAM DIFF FPKM_TRACKING GTF	Cole Trapnell	Sep 10, 2011
GSE33023	mRNA-seq of L1 larvae recovering from arrest	Expression profiling by high throughput sequencing	Caenorhabditis elegans	10	BAM BEDGRAPH BW GTF TXT SRA Run Selector	Colin Maxwell	Apr 25, 2012
GSE33092	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [HT-seq]	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BW GTF SRA Run Selector	Douglas Porter	Apr 28, 2012
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE33816	RNA-seq analysis of K562 cells (K562-shX) with stable integration of a tet-inducible shRNA targeting a candidate (X) transcription factor from ENCODE/HudsonAlpha-MyersLab	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM BW GTF SRA Run Selector	Anita Bansal	Dec 01, 2011
GSE34448	RNA Subcellular CAGE Localization from ENCODE/RIKEN	Expression profiling by high throughput sequencing	Homo sapiens	78	BED BEDRNAELEMENTS BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Dec 16, 2011