GEO Browser - GEO

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1129 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					GTF
GSE20846	Transcript assembly and abundance estimation from RNA-Seq reveals thousands of new transcripts and switching among isoforms	Expression profiling by high throughput sequencing	Mus musculus	4	GTF SAM SRA Run Selector	Cole Trapnell	Apr 14, 2010
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE27243	A Transcriptomic Atlas of Mouse Neocortical Layers	Expression profiling by high throughput sequencing	Mus musculus	19	BAM GTF TSV WIG SRA Run Selector	T Grant Belgard	Aug 24, 2011
GSE27269	Identifying targets of DSX with DamID-seq	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	12	BED BEDGRAPH GTF MAP TXT SRA Run Selector	Brian Oliver	Oct 30, 2014
GSE29006	mRNA-seq of Human Airway Epithelial Cells	Expression profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH GTF TXT SRA Run Selector	Avrum Spira	Jun 01, 2011
GSE30567	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)	Expression profiling by high throughput sequencing	Homo sapiens	99	BAM BEDRNAELEMENTS BIGWIG GFF GTF PDF TXT SRA Run Selector	ENCODE DCC	Jul 13, 2011
GSE32038	Differential Gene and Transcript Expression Analysis with TopHat and Cufflinks	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BAM DIFF FPKM_TRACKING GTF	Cole Trapnell	Sep 10, 2011
GSE32260	Relationship between DNMT1-RNA interactions, DNA methylation and gene expression	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	8	BSP CEL GTF WIG	Touati Benoukraf	Dec 01, 2012
GSE32399	Regions of Focal DNA Hypermethylation and Long-Range Hypomethylation in Colorectal Cancer Coincide with Nuclear Lamina-Associated Domains	Methylation profiling by high throughput sequencing	Homo sapiens	2	GTF TXT WIG SRA Run Selector	Benjamin Berman	Sep 27, 2011
GSE33023	mRNA-seq of L1 larvae recovering from arrest	Expression profiling by high throughput sequencing	Caenorhabditis elegans	10	BAM BEDGRAPH BW GTF TXT SRA Run Selector	Colin Maxwell	Apr 25, 2012
GSE33092	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration [HT-seq]	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	4	BW GTF SRA Run Selector	Douglas Porter	Apr 28, 2012
GSE33480	RNA-seq from ENCODE/Caltech	Expression profiling by high throughput sequencing	Homo sapiens	24	BAI BAM BIGBED BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Jul 12, 2012
GSE33816	RNA-seq analysis of K562 cells (K562-shX) with stable integration of a tet-inducible shRNA targeting a candidate (X) transcription factor from ENCODE/HudsonAlpha-MyersLab	Expression profiling by high throughput sequencing	Homo sapiens	12	BAM BW GTF SRA Run Selector	Anita Bansal	Dec 01, 2011
GSE34448	RNA Subcellular CAGE Localization from ENCODE/RIKEN	Expression profiling by high throughput sequencing	Homo sapiens	78	BED BEDRNAELEMENTS BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Dec 16, 2011
GSE35296	The human pancreatic islet transcriptome: impact of pro-inflammatory cytokines	Expression profiling by high throughput sequencing	Homo sapiens	10	BED GTF SRA Run Selector	Guy Bottu	Mar 09, 2012
GSE35584	RNA-seq from ENCODE/HudsonAlpha	Expression profiling by high throughput sequencing	Homo sapiens	20	BIGWIG GTF TXT SRA Run Selector	ENCODE DCC	Apr 27, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE36959	Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779	Expression profiling by high throughput sequencing	Nannochloropsis oceanica	2	FASTA GFF GTF TXT SRA Run Selector	Guangxi Wu	Apr 04, 2012
GSE37169	Oncogenic BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by array	Homo sapiens	7	BW CEL GTF	Douglas Porter	Apr 28, 2012