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1010 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					FASTA
GSE23316	ENCODE Caltech RNA-seq	Expression profiling by high throughput sequencing	Homo sapiens	36	BED12 BEDGRAPH BOWTIE FASTA PSL RPKM SRA Run Selector	ENCODE DCC	Jul 30, 2010
GSE22393	Genome-wide Measurement of RNA Secondary Structure in Yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	7	FASTA TAB WIG SRA Run Selector	Michael Kertesz	Aug 24, 2010
GSE23439	Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	FASTA TXT SRA Run Selector	Qi Zheng	Oct 04, 2010
GSE27699	Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	2	FASTA	Chong-Jian CHEN	Mar 07, 2011
GSE25449	Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil contaminated aquifer by Pyro-SIP	Non-coding RNA profiling by high throughput sequencing	unidentified	2	FASTA SRA Run Selector	Giovanni Pilloni	Mar 18, 2011
GSE28039	Evolutionary conservation of phototransduction and clock gene expression in the cave beetle Ptomaphagus hirtus (Coleoptera, Leiodidae)	Expression profiling by high throughput sequencing	Ptomaphagus hirtus	1	FASTA TXT	Bryce Daines	Mar 19, 2011
GSE26757	Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Medicago sativa	6	FASTA TXT SRA Run Selector	Sam Yang	Apr 21, 2011
GSE25747	A Genome-Wide Characterization of New and Drought Stress Responsive MicroRNAs in Populus euphratica	Expression profiling by high throughput sequencing	Populus euphratica	2	FASTA TXT SRA Run Selector	Bosheng Li	Apr 25, 2011
GSE26664	DNA sequencing of selected Globobulimina pseudospinescens organisms	Genome variation profiling by high throughput sequencing	Globobulimina pseudospinescens	1	FASTA SRA Run Selector	H.G. Stunnenberg	Jun 20, 2011
GSE27697	Two upland cotton tree fiber samples from different seasons	Non-coding RNA profiling by high throughput sequencing	Gossypium hirsutum	2	FASTA SRA Run Selector	Yu-Xian Zhu	Jul 01, 2011
GSE30370	Unique small RNA signatures uncovered in the tammar wallaby genome [small RNA_seq]	Non-coding RNA profiling by high throughput sequencing	Notamacropus eugenii	8	FASTA SRA Run Selector	James R Lindsay	Jul 28, 2011
GSE30372	Analysis of the Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Notamacropus eugenii	10	FASTA	James R Lindsay	Jul 31, 2011
GSE33334	Transgenerational inheritance of an acquired small RNA-based antiviral response in C.elegans	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	4	FASTA SAM SRA Run Selector	Gregory Minevich	Oct 31, 2011
GSE33773	The primary transcriptome of barley (Hordeum vulgare L.) chloroplasts	Expression profiling by high throughput sequencing	Hordeum vulgare	4	BEDGRAPH FASTA SRA Run Selector	Konrad U. Förstner	Nov 23, 2011
GSE29379	Cassava sRNA libraries from non-infected and infected tissues with Xanthomonas axonopodis. pv manihotis	Non-coding RNA profiling by high throughput sequencing	Manihot esculenta	2	FASTA SRA Run Selector	Alvaro Luis Pérez-Quintero	Dec 01, 2011
GSE36959	Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779	Expression profiling by high throughput sequencing	Nannochloropsis oceanica	2	FASTA GFF GTF TXT SRA Run Selector	Guangxi Wu	Apr 04, 2012
GSE23562	Small RNA profiling Tomato, wild tomato relative and series of introgression lines	Non-coding RNA profiling by high throughput sequencing	Solanum lycopersicum Solanum lycopersicum x Solanum pennellii Solanum pennellii	18	FASTA SRA Run Selector	Krys Kelly	May 29, 2012
GSE38922	Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	7	FASTA SRA Run Selector	Richard Michelmore	Jun 26, 2012
GSE37249	Differential microRNA response to a high-cholesterol, high-fat diet in livers of low and high LDL-C baboons	Non-coding RNA profiling by high throughput sequencing	Papio hamadryas	12	FASTA SRA Run Selector	Genesio Karere	Jul 14, 2012
GSE35631	Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes	Expression profiling by high throughput sequencing Other	Aliivibrio fischeri aquifer metagenome environmental samples environmental samples environmental samples	21	FASTA TXT SRA Run Selector	Giovanni Pilloni	Jul 16, 2012