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777 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BROADPEAK
GSE210270	Transcriptional readthrough as a conserved mechanism for piRNA cluster expression in mosquitoes	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	38	BED BROADPEAK NARROWPEAK	Jieqiong Qu	Feb 05, 2023
GSE218878	Chromatin profile of Anthoceros agrestis	Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	18	BROADPEAK BW FASTA GFF GFF3 XLSX	Tetsuya Hisanaga	Nov 10, 2023
GSE218880	5-methyl cytosine profile and chromatin profile of Anthoceros agrestis	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	20	BEDGRAPH BROADPEAK BW TXT	Tetsuya Hisanaga	Nov 10, 2023
GSE114950	The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	28	BROADPEAK MATRIX NARROWPEAK TXT SRA Run Selector	Hui Zhang	May 25, 2019
GSE120664	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	19	BROADPEAK BW NARROWPEAK SRA Run Selector	Michael Borg	Mar 17, 2020
GSE127986	NRP histone chaperones promote the removal of histone variant H2A.Z	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	54	BROADPEAK BW NARROWPEAK TXT WIG SRA Run Selector	Zhenhui Zhong	Apr 29, 2020
GSE144899	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [sperm]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	9	BROADPEAK BW NARROWPEAK SRA Run Selector	Michael Borg	Mar 17, 2020
GSE144900	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [sperm - third party reanalysis]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Homo sapiens		BROADPEAK BW NARROWPEAK	Michael Borg	Mar 17, 2020
GSE173812	Interplay between gene expression, histone modifications, and DNA methylation mediated by miR778 during beet cyst nematode parasitism of Arabidopsis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	18	BROADPEAK SRA Run Selector	Morgan Bennett	May 03, 2022
GSE217612	The UBP5 histone H2A deubiquitinase counteracts PRCs-mediated repression to regulate Arabidopsis development	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	16	BROADPEAK BW	Sara Farrona	Dec 06, 2023
GSE217614	The UBP5 histone H2A deubiquitinase counteracts PRCs-mediated repression to regulate Arabidopsis development	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	19	BROADPEAK BW NARROWPEAK	Sara Farrona	Dec 06, 2023
GSE218481	ChIP-seq analysis of E2FA, E2FB, E2FC and RBR targets	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	7	BIGWIG BROADPEAK NARROWPEAK	Xiaoning HE	Aug 06, 2023
GSE243804	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	152	BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE243806	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	160	BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE244846	The plant POLYMERASE-ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome wide [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Drosophila melanogaster	24	BROADPEAK BW	Jaime Pérez	Mar 07, 2024
GSE244850	The plant POLYMERASE-ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome wide	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Drosophila melanogaster	33	BROADPEAK BW	Jaime Pérez	Mar 07, 2024
GSE246997	AtSDR4L and DIG1 interact with VAL2 to promote seed-to-seedling transition	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	18	BROADPEAK NARROWPEAK TDF	Liang Song	Apr 23, 2024
GSE255444	Cold stress induces rapid gene-specific changes in the levels of H3K4me3 and H3K27me3 in Arabidopsis thaliana [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	18	BROADPEAK BW	Lea Andree Charlotte Faivre	Mar 15, 2024
GSE255445	Cold stress induces rapid gene-specific changes in the levels of H3K4me3 and H3K27me3 in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	27	BROADPEAK BW	Lea Andree Charlotte Faivre	Mar 15, 2024
GSE143658	Chromatin remodeling in bovine embryos indicates species-specific regulation of genome activation	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus	30	BROADPEAK BW SRA Run Selector	Michelle M Halstead	May 05, 2020