GEO Browser - GEO

Series

Samples

Platforms

DataSets

519 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BEDPE
GSE29098	ChimeraScan: A tool for identifying chimeric transcription in sequencing data	Expression profiling by high throughput sequencing	Homo sapiens	3	BAM BEDPE SRA Run Selector	Matthew Iyer	Sep 01, 2011
GSE55581	Diet-induced chromatin remodeling in mice livers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	20	BED BEDPE DIFF NARROWPEAK SRA Run Selector	Amy Leung	Jul 17, 2014
GSE69600	Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci	Other	Homo sapiens	4	BED BEDPE SRA Run Selector	Paul Martin	Nov 24, 2015
GSE90561	Sox2 is required for functional chromatin connectivity in brain-derived neural stem cells.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BEDPE TXT	Federico Zambelli	Mar 07, 2019
GSE115363	ESRRB regulates glucocorticoid gene expression in mice and patients with acute lymphoblastic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BED BEDPE TXT SRA Run Selector	Julie Zhu	Jul 20, 2020
GSE122603	Chromatin architecture reorganisation during neuronal cell differentiation in Drosophila genome	Other	Drosophila melanogaster	4	BED BEDPE SRA Run Selector	Nicolae Radu Zabet	Jan 18, 2019
GSE126199	Integrative vascular endothelial cell genomics identify AIDA as a coronary artery disease candidate gene (Hi-C)	Other	Homo sapiens	4	BED BEDPE BW HIC SRA Run Selector	Guillaume Lettre	Jun 25, 2019
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE133163	Hi-C to Identify Interactions between Distant Genomic Loci due to BRD4-NUT-mediated Megadomain Formation	Other	Homo sapiens	32	BED BEDPE BW HIC SRA Run Selector	Kyle Eagen	Apr 01, 2020
GSE133928	A topological atlas reveals layers of genome reorganization in colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	175	BED BEDPE BW CPG MATRIX TXT SRA Run Selector	Alejandro Reyes	Aug 24, 2020
GSE136889	Epigenomics landscape of colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	309	BED BEDPE TAB TXT	Ayush T Raman	May 22, 2021
GSE137661	Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia (ChIA-PET)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED BEDPE HIC TXT SRA Run Selector	Yijun Ruan	Dec 05, 2019
GSE137662	Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDPE HIC TXT	Yijun Ruan	Dec 05, 2019
GSE137711	High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	288	BED BEDPE BW	Folkert van Werven	Dec 15, 2020
GSE138543	Suppression of liquid-liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	BED BEDPE BW MCOOL TXT SRA Run Selector	Mikhail Magnitov	Mar 22, 2021
GSE138822	The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	38	BED BEDPE BIGWIG CSV HIC TXT SRA Run Selector	Jared V Goodman	Apr 13, 2020
GSE139860	Replication-fork arrest at tRNA genes in S. cerevisiae does not require tRNA transcription and is facilitated by topoisomerases and Rad18-dependent repair pathways	Other	Saccharomyces cerevisiae	33	BED BEDPE TXT SRA Run Selector	Duncan Smith	Nov 02, 2019
GSE141752	Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci	Genome binding/occupancy profiling by high throughput sequencing Other SNP genotyping by SNP array Genome variation profiling by SNP array	Homo sapiens	18	BED BEDPE HIC TXT	Thomas Quertermous	May 07, 2020
GSE146750	CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system [Hi-C]	Other	Drosophila melanogaster	8	BED BEDPE SRA Run Selector	Maria Cristina Gambetta	Jan 18, 2021
GSE147059	The role of insulators and transcription in 3D chromatin organisation of flies	Other Expression profiling by high throughput sequencing	Drosophila melanogaster	18	BED BEDPE TXT SRA Run Selector	Nicolae Radu Zabet	Feb 07, 2022