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19587 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
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GSE195869	Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species	Methylation profiling by high throughput sequencing	Zosteropidae Zoarces americanus Zenopsis conchifer Zaprora silenus Zamenis longissimus Yinpterochiroptera Yangochiroptera Xiphias gladius Xenagama wilmsi Vulpes vulpes Vipera berus Vipera ammodytes Vidua paradisaea Vicugna pacos Vicugna Vermilingua Varecia Varanus gouldii Varanus exanthematicus Varanus Vanellus armatus Ursus arctos Ursus Urophycis tenuis Uromastyx ocellata Uromastyx Uraeginthus bengalus Upupa epops Tupaia Trioceros jacksonii Tringa totanus Triglops scepticus Tragulus javanicus Tragelaphus spekii Tragelaphus angasii Trachyphonus erythrocephalus Trachemys scripta scripta Trachemys scripta elegans Trachemys Tockus flavirostris Tockus deckeni Tinca tinca Tiliqua scincoides Tiliqua rugosa Thyonella gemmata Thunnus albacares Theropithecus gelada Theloderma Tetrastes bonasia Tetrao urogallus Testudo kleinmanni Testudo hermanni Testudinidae Terrapene Tayassuidae Taurotragus Tapirus Tamiops Tamias Sylvia atricapilla Sus scrofa domesticus Sus scrofa Suricata Sufflamen chrysopterum Styela montereyensis Sturnus vulgaris Struthio camelus Strongylocentrotus purpuratus Strongylocentrotus droebachiensis Strix uralensis Strix aluco Strigiformes Stichopus chloronotus Stenotomus chrysops Squalus acanthias Spinus spinus Sphoeroides maculatus Spheniscus humboldti Spermophilus Spatula querquedula Shinisaurus crocodilurus Serinus Semicossyphus pulcher Sebastolobus alascanus Sebastes semicinctus Sebastes paucispinis Sebastes ovalis Sebastes norvegicus Sebastes mystinus Sebastes miniatus Sebastes hopkinsi Sebastes constellatus Sebastes chrysomelas Sebastes caurinus Sebastes borealis Sebastes atrovirens Scyliorhinus retifer Scopus umbretta Scophthalmus aquosus Scolopsis bilineata Sciurus vulgaris Scincidae Scandentia Sauromalus Sarcophilus Salvelinus umbla Salvelinus alpinus Salmo trutta Salmo salar Saimiriinae Saguinus oedipus Saguinus mystax Saguinus imperator Saguinus Saccoglossus kowalevskii Rupicapra rupicapra Rollulus Riftia pachyptila Rhyticeros narcondami Rhinoptera bonasus Rhinogobiops nicholsii Rhinocerotidae Rhinecanthus aculeatus Rhea americana Rhacophorus reinwardtii Rhabdamia gracilis Recurvirostra avosetta Rattus rattus Rattus norvegicus Rangifer tarandus Pytilia melba Pythonidae Python regius Python molurus Pycnonotus barbatus Puma concolor Ptilinopus pulchellus Ptilinopus Pteropus Pterocaesio marri Psittacus Pseudomonacanthus peroni Pseudobalistes fuscus Pseudanthias ventralis Pseudanthias Psarisomus dalhousiae Psammomys obesus Procyon lotor Probosciger aterrimus Pristigenys alta Prionotus carolinus Potamochoerus porcus Pongo Pomatomus saltator Pomacentrus coelestis Polypedates otilophus Polychrus marmoratus Pollachius virens Pogona barbata Podothecus accipenserinus Ploceus cucullatus Pleurogrammus monopterygius Pleoticus muelleri Plegadis falcinellus Platax teira Pitta moluccensis Pithecia pithecia Pisaster giganteus Pisaster brevispinus Picus viridis Phyllopteryx taeniolatus Photoblepharon palpebratum Phoenicopteriformes Phodopus campbelli Phocidae Phloeomys Philomachus Phasianus colchicus Phascolarctos cinereus Phalacrocorax carbo Petaurus breviceps Petauridae Perdix perdix Penaeus Pelecanus crispus Pelecanus Patiria miniata Passer domesticus Parus major Parupeneus spilurus Paroedura picta Parapercis xanthozona Paralichthys dentatus Paracirrhites forsteri Paracanthurus hepatus Papio hamadryas Papio Panthera tigris Panthera pardus Panthera onca Panthera leo Pachyuromys Oxylebius pictus Oxycheilinus digramma Oxycercichthys veliferus Ovis orientalis Ovis aries Otaria Ostrea edulis Ostorhinchus rueppellii Ostorhinchus moluccensis Ostorhinchus aureus Osteoglossum bicirrhosum Oryctolagus cuniculus Oplurus Ophiothrix spiculata Ophiopteris papillosa Ophioderma panamensis Onuxodon fowleri Octopus vulgaris Nymphicus hollandicus Nyctereutes Nothobranchius furzeri Notamacropus rufogriseus Notamacropus parma Neurergus Neoniphon sammara Negaprion brevirostris Nectariniidae Natrix tessellata Nasua Nardoa novaecaledoniae Nanger dama Naja Myzopsetta ferruginea Myoxocephalus octodecemspinosus Myocastor coypus Mya arenaria Mustelus canis Mustelidae Mustela putorius Mustela Musophagidae Musophaga Mus musculus Muntiacus Mungos mungo Mullus surmuletus Morone saxatilis Monacanthidae Molgula citrina Mimus polyglottos Milvus milvus Merops bullockoides Merops apiaster Melopsittacus Meles meles Martes foina Marmota Malacochersus Magallana gigas Macroscelides proboscideus Macroscelidea Macropus Macropodidae Macaca sylvanus Macaca silenus Macaca Lytechinus variegatus Lyrurus tetrix Lynx lynx Lutra lutra Lutjanus quinquelineatus Lutjanus mahogoni Lumpenus lampretaeformis Loweina terminata Loweina rara Loriculus galgulus Lophoceros nasutus Lophoceros alboterminatus Lophius piscatorius Lonchura oryzivora Loligo vulgaris Lissemys punctata Leucoraja ocellata Leucoraja erinaceus Lethrinus atkinsoni Lethenteron camtschaticum Lepus timidus Lepus europaeus Leptoptilos crumenifer Leptoclinus maculatus Leptailurus Lepidopsetta polyxystra Lepas anatifera Leontopithecus chrysomelas Leontopithecus Leontocebus fuscicollis Lemur Leiocephalus Lamprotornis chalcurus Lampropeltis Lama glama Lagostomus maximus Laemanctus Labroides bicolor Kobus leche Kobus Jaculus Jacanidae Irena puella Incilius alvarius Illex illecebrosus Iguanidae Hystricidae Hypselecara coryphaenoides Hypanus americanus Hydrochoerus hydrochaeris Hoplobatrachus tigerinus Homarus americanus Holothuria cinerascens Holothuria atra Holothuria Histrio histrio Hippotragus equinus Hippotragus Hippoglossoides platessoides Hippoglossoides elassodon Hippoglossina oblonga Heterocephalus Hemitripterus americanus Hemitragus Hemisphaeriodon Hemilepidotus jordani Heloderma Heleophrynidae Halocynthia pyriformis Halichoeres trimaculatus Haliaeetus leucocephalus Haliaeetus albicilla Haemulon flavolineatum Gypaetus Gymnothorax moringa Grus paradisea Grus japonensis Graptemys Glyptocephalus zachirus Glyptocephalus cynoglossus Glis glis Giraffa giraffa Geronticus eremita Geopelia placida Geoemyda spengleri Geochelone Gekkonidae Garrulus glandarius Gallus gallus Gallus Gallicolumba Galeocerdo cuvier Gadus morhua Gadus chalcogrammus Furcifer pardalis Fromia indica Fromia Folivora Fistularia commersonii Felis silvestris Felis catus Falco tinnunculus Falco peregrinus Falco cherrug Eurypygidae Euplectes orix Euplectes Eunectes Eudyptes chrysocome Esox lucius Erythrura Erpeton Erinaceidae Erethizon Equus zebra Equus asinus asinus Equus Emydidae Embiotoca jacksoni Elops affinis Eliomys quercinus Elephas maximus indicus Ecteinascidia turbinata Ecsenius Echinarachnius parma Duttaphrynus melanostictus Ducula bicolor Dromaius novaehollandiae Dracaena guianensis Doryteuthis pealeii Dolichotis patagonum Dolichotis Diodon hystrix Dinemellia Dendrocygna viduata Dasypodidae Dascyllus aruanus Danio rerio Dama dama Cyprinus carpio Cynoscion regalis Cynomys Cynictis Cygnus melancoryphus Cygnus cygnus Cyclura cornuta Cyclura Cyclopterus lumpus Cyclopsitta diophthalma Cyanoloxia brissonii Cyanoliseus patagonus Cuora mouhotii Cuora mccordi Cucumaria frondosa Ctenochaetus striatus Cryptacanthodes maculatus Crotalus Crocodylia Cricetus Cricetomyinae Cricetinae Coturnix delegorguei Coturnix coturnix Coryphaenoides acrolepis Corvus frugilegus Corvus corone Corvus corax Corvus Corucia zebrata Correlophus ciliatus Coronella austriaca Cornufer guentheri Coris gaimard Coris caudimacula Coracias garrulus Coracias cyanogaster Copsychus malabaricus Connochaetes Columbidae Columba livia Colobus polykomos Colobus guereza Coliiformes Coccothraustes Clupea harengus Clavelina picta Cirrhilabrus roseafascia Cirrhilabrus lineatus Circus cyaneus Circus aeruginosus Ciona intestinalis Ciconiidae Ciconia ciconia Chrysopelea Chromis punctipinnis Choerodon fasciatus Chloropsis Chloris chloris Chiroxiphia pareola Chelydra serpentina Cheilopogon californicus Cheilodipterus quinquelineatus Chauna torquata Charadriidae Chamaeleonidae Chamaeleo calyptratus Chaetodon lunula Chaetodon lineolatus Cervus nippon Cervus elaphus Cervidae Cercopithecus Cephalopholis miniata Centropyge heraldi Centropristis striata Centropomus robalito Cebinae Caviidae Casuarius casuarius Castoridae Carollia perspicillata Cariamidae Carcharias taurus Capromys pilorides Capromyidae Capricornis Capreolus capreolus Capra aegagrus Capra Cantherhines pardalis Canis lupus lycaon Canis lupus familiaris Canis lupus Canis aureus Camelus ferus Camelus dromedarius Calyptocephallela gayi Caloenas nicobarica Callorhinchus milii Callocephalon fimbriatum Callithrix jacchus Caiman yacare Cacatua alba Bycanistes bucinator Buteo lagopus Buteo buteo Buteo Bubo bubo Bubalus Branchiostoma floridae Brachylophus Botryllus schlosseri Bothriechis schlegelii Boselaphus tragocamelus Bos Boltenia ovifera Boltenia echinata Bodianus diana Boa constrictor Bison bonasus Batoidea Bathymaster signatus Balearica pavonina Axis axis Atherinomorus vaigiensis Athene noctua Astrochelys yniphora Astrochelys radiata Asio otus Ascidiella aspersa Ariopsis felis Ardea Ara ararauna Ara Aquila heliaca Aptenodytes patagonicus Apostichopus parvimensis Apodemus sylvaticus Apodemus flavicollis Aplonis panayensis Aotidae Aonyx cinereus Antilope Antidorcas Anoplopoma fimbria Anas platyrhynchos Ammotragus Ammodytes hexapterus Ammodytes dubius Ambystoma mexicanum Ambystoma andersoni Ambystoma Amblyglyphidodon leucogaster Amazona agilis Amazona Amandava subflava Alitta succinea Alectis ciliaris Ailurus fulgens Agapornis taranta Agapornis personatus Agapornis lilianae Agapornis canus Agapornis Acryllium vulturinum Acomys Acinonyx Accipiter nisus Accipiter gentilis Acanthurus triostegus Acanthosaura Abronia anzuetoi	3023	BED SRA Run Selector	Christoph Bock	Jun 18, 2022
GSE234921	Teosinte Pollen Drive guides maize domestication and evolution by RNA interference [WGS]	Other	Zea mays subsp. mays x Zea mays subsp. mexicana	20	BED VCF	Robert A Martienssen	Jul 26, 2023
GSE70251	Genome-wide mapping of Zea maize TSSs	Expression profiling by high throughput sequencing	Zea mays subsp. mays	8	BED CSV SRA Run Selector	Erich Grotewold	Nov 04, 2015
GSE85203	Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes	Other	Zea mays subsp. mays Arabidopsis thaliana	14	BED BW SRA Run Selector	Robert J Schmitz	Nov 30, 2016
GSE97458	Genome-wide characterization of cis-acting DNA targets of Opaque11 in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays subsp. mays	2	BED TXT SRA Run Selector	Weiwei Qi	Oct 01, 2017
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE38587	The P1 Transcription Factor Binding to the Genome	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	4	BED SRA Run Selector	Erich Grotewold	Sep 14, 2012
GSE39161	Unraveling the KNOTTED1 regulatory network in maize meristems (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BED SRA Run Selector	Erich Grotewold	Sep 04, 2012
GSE39232	The maize methylome modulates mRNA splicing and reveals widespread paramutation guided by small RNA.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Zea mays	35	BED TXT SRA Run Selector	Zhenyuan Lu	Jun 03, 2013
GSE43138	Fine structure analysis and epigenetic properties of a de novo centromere on a chromosome fragment in maize	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	3	BED TXT SRA Run Selector	Junling Pang	Jun 25, 2013
GSE43140	Functional centromere lost centromeric specific sequences but gain new sequences from nearby chromosomal arm.	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	4	BED TXT SRA Run Selector	Junling Pang	Jun 25, 2013
GSE55701	Genomic features shaping the landscape of meiotic double-strand break hotspots in maize [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	9	BED SRA Run Selector	Wojciech Pawlowski	Jul 08, 2016
GSE58549	DNA Methylation Identifies Epigenetic Variation across Embryo and Endosperm in Maize (Zea may)	Methylation profiling by high throughput sequencing	Zea mays	2	BED SRA Run Selector	Xingjun Wang	Jun 17, 2014
GSE63991	Genome-wide characterization of cis-acting DNA targets of Opaque2 in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	2	BED TXT SRA Run Selector	Chaobin Li	Mar 06, 2015
GSE64641	Epigenetic characteristics and gene-expression analysis of a de novo centromere in maize	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	6	BED TXT SRA Run Selector	Handong Su	Dec 01, 2016
GSE84368	Genomic features shaping the landscape of meiotic double-strand break hotspots in maize [MNase-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	2	BED SRA Run Selector	Wojciech Pawlowski	Jul 13, 2016
GSE94251	Genome-wide identification of H3K9ac enriched regions in inner stem tissue of V2 seedlings and husks (maize B73) [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	7	BED BW SRA Run Selector	Maike Stam	Jul 03, 2017
GSE94291	Genome-wide chromatin accessibility profiling in maize using DNase-seq on two different tissues: inner stem tissue of V2 seedlings and husk	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BED BW SRA Run Selector	Johan Zicola	Jul 03, 2017
GSE97369	DNase-SEQ analysis of whole leaf and bundle sheath tissues in Zea mays, Sorghum bicolor, Setaria italica and Brachypodium distachyon.	Genome binding/occupancy profiling by high throughput sequencing	Zea mays Sorghum bicolor Setaria italica Brachypodium distachyon	20	BED TXT SRA Run Selector	Steven James Burgess	Jul 24, 2017
GSE102051	Genome-wide characterization of cis-acting DNA targets of Opaque11 in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	4	BED TXT SRA Run Selector	Liming Xu	Apr 09, 2018