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12 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter	Platform: GPL24884
GSE145619	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	132		BED TAB TBI TSV SRA Run Selector	Ann Rose Bright	Dec 18, 2020
GSE146830	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	31		BED TXT SRA Run Selector	Anneke Dixie Kakebeen	Mar 12, 2020
GSE175662	Chromatin Accessibility Analysis Reveals Distinct Functions for HDAC and EZH2 Activities in Early Regeneration	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	35		BED TXT SRA Run Selector	Anneke Dixie Kakebeen	May 01, 2022
GSE138303	ATAC-Seq of Xenopus tail regeneration	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	18		BW SRA Run Selector	Jessica Kay Chang	Jan 31, 2020
GSE226463	Pol III chromatin immunoprecipitation-sequencing (ChIP-seq) of Xenopus tropicalis blastula embryos	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	8		BW	Emil Karaulanov	Aug 29, 2024
GSE226467	5-formylcytosine is an activating epigenetic mark for RNA Pol III during zygotic reprogramming	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Xenopus tropicalis	32		BW TSV	Emil Karaulanov	Aug 29, 2024
GSE158849	Spatio-temporal mRNA tracking in the early zebrafish embryo	Expression profiling by high throughput sequencing	Danio rerio Xenopus laevis Xenopus tropicalis	8		CSV MTX TSV SRA Run Selector	Jan Philipp Junker	Dec 07, 2020
GSE146836	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Expression profiling by high throughput sequencing	Xenopus tropicalis	2		MTX TSV TXT SRA Run Selector	Anneke Dixie Kakebeen	Mar 12, 2020
GSE146837	Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	33		MTX TSV	Anneke Dixie Kakebeen	Mar 12, 2020
GSE113074	The dynamics of gene expression in vertebrate embryogenesis at single cell resolution	Expression profiling by high throughput sequencing	Xenopus tropicalis	75		TSV SRA Run Selector	James Alexander Briggs	Apr 28, 2018
GSE226466	RNA-seq expression profiling of Xenopus tropicalis blastula embryos upon Tet2 and Tet3 knockdown	Expression profiling by high throughput sequencing	Xenopus tropicalis	6		TSV	Emil Karaulanov	Aug 29, 2024
GSE158331	Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS	Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	2		TXT SRA Run Selector	Anneke Dixie Kakebeen	Sep 23, 2020