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5399 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247				TXT
GSE125656	Exonuclease combinations reduce noises in 3D genomics technologies	Third-party reanalysis Other	Mus musculus	27	HIC TXT SRA Run Selector	Qing Li	Apr 08, 2020
GSE137098	Embryonic stem cell-derived neurons as a model system for epigenome maturation during development	Third-party reanalysis Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	53	BIGWIG GTF TXT SRA Run Selector	Ryan Lister	Jul 25, 2023
GSE166775	Single-Cell RNA Sequencing Reveals the Immunological Profiles of Renal Allograft Rejection in mice	Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	1	MTX TSV TXT SRA Run Selector	QIXIA SHEN	Jul 21, 2021
GSE197610	The RNA Binding Protein Dead End1 Is Differentially Expressed in Male Germ Cells During Late Gestation and Targets Chromatin Modifiers and Translational Machinery	Third-party reanalysis Other Expression profiling by high throughput sequencing	Mus musculus	34	CLOUPE CSV MTX RDATA SF TSV TXT XLSX	Victor A Ruthig	Oct 18, 2022
GSE205285	Mouse single positive thymocyte bulk RNA-seq from Kmt2d knockout and control littermates.	Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	18	BIGWIG TSV TXT	Sarah J Potter	May 03, 2024
GSE218137	The role of DNMT3A in AITL	Third-party reanalysis Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	3	RDS TAR TXT	Xaingyu Pan	Aug 13, 2023
GSE223757	Genomic context mediates position-dependent enhancer function at the Sonic hedgehog locus	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	TXT	Daniel Murad Ibrahim	Aug 01, 2023
GSE246373	Inflammation and neutrophil extracellular traps in cerebral cavernous malformation	Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	10	TXT	Ross Smith	Oct 31, 2023
GSE272387	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [RNA-seq gastruloid]	Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	26	BW TXT	Lucille Lopez-Delisle	Jul 18, 2024
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Other Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE114981	Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	66	BED TXT SRA Run Selector	Suming Huang	Dec 03, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Suming Huang	Jan 27, 2021
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE120409	A neutropenia-associated transcription factor mutation differentially impacts target genes in the cell-states traversed during granulocyte specification and commitment	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	833	BED H5 TXT	H. Leighton Grimes	Apr 06, 2020
GSE123692	β-catenin safeguards the ground state of pluripotency by strengthening the robustness of the transcriptional apparatus	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	24	BW TXT	Yiwei Lai	Jul 01, 2020
GSE124463	Promoter capture Hi-C identifies long-range promoter contact dynamics in response to diet and the development of non-alcoholic fatty liver disease	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	46	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Jan 01, 2020
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE125595	RNA interactions are essential for proper CTCF function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	24	BW CLOUPE HIC TXT SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019