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3657 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247				SRA Run Selector
GSE168876	Spiny mice (Acomys cahirinus) activate unique transcriptional programs after severe kidney injuries and regenerate organ function without fibrosis	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	18	XLSX SRA Run Selector	Daryl Okamura	Sep 13, 2021
GSE182141	A subset of pro-inflammatory spiny mice macrophages promotes a regenerative phenotype in mouse fibroblasts	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	MTX TSV SRA Run Selector	Steve Potter	Oct 23, 2023
GSE186346	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	25	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186347	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [P0&P10]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	44	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE182553	HDAC1/2 is indispensable for mouse and bovine ZGA via regulating distribution of H3K27ac and H3K4me3 [RNA-seq]	Expression profiling by high throughput sequencing	Bos taurus Mus musculus	26	TXT SRA Run Selector	Kun Zhang	May 21, 2022
GSE151761	Innovations in primate interneuron repertoire	Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus Mustela putorius furo	123	TXT SRA Run Selector	Fenna Marie Krienen	Jun 04, 2020
GSE161645	scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution	Expression profiling by high throughput sequencing	Callithrix jacchus Macaca fascicularis Mus musculus	147	CSV MTX TSV TXT SRA Run Selector	Leah Byrne	Oct 19, 2021
GSE184893	RNA m6A methylome from zebrafish zygotes, mouse liver polyA-selected RNAs, mouse embryonic stem cells, spike-in RNA controls, and single mouse oocytes and embryos	Methylation profiling by high throughput sequencing	Danio rerio Mus musculus	52	BIGWIG SRA Run Selector	Kin Fai Au	May 05, 2023
GSE186158	Single-cell transcriptomic atlas reveals the evolution of immune cells and molecules across multiple vertebrate species	Expression profiling by high throughput sequencing	Danio rerio Homo sapiens Macaca mulatta Mus musculus Rattus norvegicus Sus scrofa Xenopus tropicalis	7	TAR SRA Run Selector	Cangang Zhang	Jan 30, 2023
GSE192740	Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Macaca mulatta Mesocricetus auratus Mus musculus Sus scrofa	132	H5 RDS TSV TXT SRA Run Selector	Liesbet Martens	Jan 11, 2022
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE118785	H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	43	BW TDF SRA Run Selector	Carmen Rivas	Aug 30, 2019
GSE147879	Two competing mechanisms of DNMT3A recruitment regulate the dynamics of de novo DNA methylation at CpG islands	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	78	BED BEDGRAPH BW SRA Run Selector	Jacek Majewski	May 13, 2021
GSE166155	KARR-seq reveals principles of high-order ribonucleoprotein structure assembly	Other	Drosophila melanogaster Homo sapiens Mus musculus Respiratory syncytial virus Vesicular stomatitis virus	67	PAIRS SRA Run Selector	Youzhi Cheng	Dec 06, 2023
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE167518	Transcriptional-Regulatory Convergence Across Functional MDD Risk Variants Identified by Massively Parallel Reporter Assays [Expt2]	Expression profiling by high throughput sequencing	Escherichia coli Mus musculus	13	TXT SRA Run Selector	Joseph Dougherty	Jun 30, 2021
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023
GSE160471	Single nucleus RNAseq of cerebellar nucleus neurons in three species	Expression profiling by high throughput sequencing	Gallus gallus Homo sapiens Mus musculus	3	RDATA SRA Run Selector	Justus M Kebschull	Oct 30, 2020
GSE160653	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	3	BEDGRAPH NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020
GSE160654	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BEDGRAPH BROADPEAK NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020