GEO Browser - GEO

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61 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247				COV
GSE245426	A maternal-effect Padi6 variant causes nuclear and cytoplasmic abnormalities in oocytes as well 2 as failure of epigenetic reprogramming and zygotic genome activation in embryos	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	193	COV VCF	Francesco Cecere	Oct 18, 2023
GSE261788	AMAR-seq: automated multimodal sequencing of DNA methylation, chromatin accessibility, and RNA expression with single-cell resolution	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	83	COV TXT	Xi Zeng	Mar 21, 2024
GSE195556	An engineered Sox17 induces somatic to neural stem cell fate transition independently from pluripotency reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	COV MTX TSV	Mingxi WENG	Jul 19, 2023
GSE225305	An engineered Sox17 induces somatic to neural stem cell fate transition independently from pluripotency reprogramming [RRBS]	Methylation profiling by high throughput sequencing	Mus musculus	13	COV	Mingxi WENG	Jul 19, 2023
GSE153331	Astrocyte Reactivity and Cognitive Decline Follow Chronic Heterochromatin Loss in Neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	71	BEDGRAPH BW COV CSV RDS TXT SRA Run Selector	Andrew Newman	Jan 10, 2024
GSE245383	Astrocyte-produced HB-EGF limits autoimmune CNS pathology	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	14	COV	Mathias Linnerbauer	Dec 01, 2023
GSE245382	Astrocyte-produced HB-EGF limits autoimmune CNS pathology [WGBS]	Methylation profiling by high throughput sequencing	Mus musculus	8	COV	Mathias Linnerbauer	Dec 01, 2023
GSE228707	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	COV NARROWPEAK	Moshe Szyf	Jun 30, 2023
GSE228705	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [mouse APOBEC-seq]	Methylation profiling by high throughput sequencing	Mus musculus	12	COV	Moshe Szyf	Jun 30, 2023
GSE247019	Cancer-associated DNA Hypermethylation of Polycomb Targets Requires DNMT3A Dual Recognition of histone H2AK119 Ubiquitination and the Nucleosome Acidic Patch	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	134	BW COV	Kristjan H. Gretarsson	Aug 28, 2024
GSE247018	Cancer-associated DNA Hypermethylation of Polycomb Targets Requires DNMT3A Dual Recognition of histone H2AK119 Ubiquitination and the Nucleosome Acidic Patch [EM-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	18	COV	Kristjan H. Gretarsson	Aug 31, 2024
GSE247013	Cancer-associated DNA Hypermethylation of Polycomb Targets Requires DNMT3A Dual Recognition of histone H2AK119 Ubiquitination and the Nucleosome Acidic Patch [RRBS]	Methylation profiling by high throughput sequencing	Mus musculus	24	COV	Kristjan H. Gretarsson	Aug 31, 2024
GSE213749	Comparison of global DNA methylation analysis by whole genome bisulfite sequencing and the Infinium Mouse Methylation BeadChip using fresh and fresh-frozen mouse epidermis	Methylation profiling by array Methylation profiling by high throughput sequencing	Mus musculus	24	COV IDAT	Olivia Luxford Meyer	Sep 23, 2022
GSE224447	DNA methylation and gene expression changes in mice induced by parabiosis and recovery	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Methylation profiling by array	Homo sapiens Macaca mulatta Mus musculus Rattus Rattus norvegicus	233	COV IDAT TXT	Jesse Poganik	Apr 21, 2023
GSE167237	DNA methylation regulates haematopoietic development	Methylation profiling by high throughput sequencing	Mus musculus	18	COV SRA Run Selector	Di Di Liu	Feb 23, 2021
GSE176461	DNA sequence and chromatin modifiers determine epigenetic bistability at imprinting control regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	7	COV TAB WIG	Tuncay Baubec	Jul 20, 2022
GSE176460	DNA sequence determines epigenetic bistability at imprinting control regions [BS-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	2	COV SRA Run Selector	Tuncay Baubec	Jul 20, 2022
GSE140125	DeepH&M: Simultaneous determination of single-CpG hydroxymethylation and methylation levels from enrichment and restriction enzyme sequencing methods	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	24	COV TXT SRA Run Selector	Daofeng Li	Sep 10, 2020
GSE134636	Developmental Dieldrin Exposure Alters DNA Methylation at Genes Related to Dopaminergic Neuron Development and Parkinson’s Disease in Mouse Midbrain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	58	COV H5 TXT XLS SRA Run Selector	Alison I Bernstein	Jul 23, 2019
GSE264165	Developmental origins of Parkinson’s disease risk: developmental exposure to the organochlorine pesticide dieldrin leads to sex-specific DNA modifications in critical neurodevelopmental pathways in the mouse midbrain	Methylation profiling by high throughput sequencing	Mus musculus	150	COV	Alison I Bernstein	May 31, 2024