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541 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247				BIGWIG
GSE106379	Genetics, sex and life experience influence DNA methylation in the mouse	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BIGWIG TXT SRA Run Selector	Paul A Wade	Oct 24, 2018
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE123743	Xist RNA-dependent Polycomb recruitment through the B and C repeats results in mild relaxation of X-linked transcriptional silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BIGWIG TXT	Aurélie Bousard	Aug 28, 2019
GSE124463	Promoter capture Hi-C identifies long-range promoter contact dynamics in response to diet and the development of non-alcoholic fatty liver disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Jan 01, 2020
GSE124911	EOMES-dependent epigenetic reprogramming during CD8 T cell development leads to acquisition of memory traits (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BIGWIG NARROWPEAK SRA Run Selector	Stanislas Goriely	Jun 06, 2019
GSE124914	EOMES-dependent epigenetic reprogramming during CD8 T cell development leads to acquisition of memory traits	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BIGWIG BROADPEAK NARROWPEAK	Stanislas Goriely	Jun 06, 2019
GSE125972	A distal super enhancer mediates estrogen-dependent mouse uterine–specific gene transcription of Insulin-like growth factor 1 (Igf1)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BIGWIG HIC TXT SRA Run Selector	Sylvia C Hewitt	May 08, 2019
GSE129724	Multi-step Epigenetic Programming of Monocytes during Infection	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BIGWIG NARROWPEAK SRA Run Selector	Stanislas Goriely	Dec 31, 2019
GSE130760	Time series XBP1s ChIP-Seq in wild-type mice and XBP1 liver-specific knockout mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BIGWIG SRA Run Selector	Bokai Zhu	Nov 26, 2019
GSE131098	Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	126	BIGWIG TXT SRA Run Selector	Zhuqiang Zhang	Jun 26, 2020
GSE132446	Refined spatial temporal epigenomic profiling reveals intrinsic connection between PRDM9-mediated H3K4me3 and the fate of double-stranded breaks	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	186	BED BIGWIG SRA Run Selector	Yuxuan Zheng	Feb 12, 2020
GSE132952	Methylation and gene expression data from Dnmt3b+/+, Dnmt3b-/- and Dnmt3bCI/CI embryos harvested at E11.5	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BIGWIG TXT SRA Run Selector	Rene Opavsky	Aug 19, 2019
GSE133945	Cross-presentation by dendritic cells is limited by non-canonical autophagy.	Expression profiling by high throughput sequencing	Mus musculus	30	BIGWIG TXT SRA Run Selector	Jennifer Martinez	Dec 31, 2021
GSE135808	Topoisomerase 1 Nicking-dependent HP1gamma Engagement Mediates Acute Activation of Phase-separated Enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED BEDGRAPH BIGWIG	Yuliang Tan	Aug 04, 2022
GSE136417	Maternal exposure to a mitochondrial toxicant results in life-long alterations in DNA methylation and gene expression in the offspring	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	66	BIGWIG TXT SRA Run Selector	Janine Santos	Jul 31, 2020
GSE136808	Inactivation of the nuclear interacting SET domain protein 1 (NSD1) impairs GATA1-regulated erythroid differentiation and causes erythroleukemia. NSD1 Add-back experiment. ChIPSeq for Gata1, H3K27ac and H3K36me3.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BIGWIG SRA Run Selector	DBM Bioinformatics Core Facility	Apr 07, 2020
GSE136811	Inactivation of the nuclear interacting SET domain protein 1 (NSD1) impairs GATA1-regulated erythroid differentiation and causes erythroleukemia.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	62	BIGWIG	DBM Bioinformatics Core Facility	Apr 07, 2020
GSE137098	Embryonic stem cell-derived neurons as a model system for epigenome maturation during development	Methylation profiling by high throughput sequencing Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	53	BIGWIG GTF TXT SRA Run Selector	Ryan Lister	Jul 25, 2023
GSE137193	ChIP-nexus data for Oct4, Sox2, Nanog and Klf4 in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BIGWIG BW NARROWPEAK SRA Run Selector	Julia Zeitlinger	Nov 21, 2020