GEO Browser - GEO

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33 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057				TBI
GSE148981	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BW CSV H5 TAB TBI TSV TXT	Remy Bosselut	Nov 25, 2020
GSE148979	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (Mouse scATACseq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV H5 TBI TSV SRA Run Selector	Remy Bosselut	Nov 25, 2020
GSE245836	CD38+ Alveolar Macrophages mediate early control of M.tuberculosis proliferation in the lung [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TBI TSV	Davide Pisu	Oct 31, 2023
GSE234576	Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20 using single cell RNA-sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	BW CSV H5 NARROWPEAK TBI TSV	Edward Usherwood	Jun 30, 2023
GSE234574	Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20 using single cell RNA-sequencing (scATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV H5 TBI TSV	Edward Usherwood	Jul 03, 2023
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE142366	Dynamic transcriptional responses to injury of regenerative and non-regenerative cardiomyocytes revealed by single-nucleus RNA sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	18	BED CSV H5 MTX TBI TSV	Zhaoning Wang	Mar 18, 2020
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE213595	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice [Hi-C]	Other	Mus musculus	2	BED BW HIC TBI	Kim Nichols	Aug 24, 2023
GSE152607	Emergence of a high-plasticity cell state during lung cancer evolution	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	7452	H5 TBI TSV	Matan Hofree	Jul 24, 2020
GSE154965	Emergence of a high-plasticity cell state during lung cancer evolution, single-cell ATACseq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	H5 TBI TSV SRA Run Selector	Matan Hofree	Jul 24, 2020
GSE222588	Epigenetic profiling reveals developmental traits of adult thymus-derived Vγ4+ γδ T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	H5 MTX TBI TSV	Tao Yang	Jan 13, 2023
GSE151408	Erythrophagocytosis drives anti-inflammatory programming of liver macrophages (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 RDS TBI TSV SRA Run Selector	Marc Pfefferle	Aug 13, 2020
GSE190057	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED HIC MTX TBI TSV TXT	CBDM Lab	Dec 03, 2021
GSE266424	IRF8 defines the epigenetic landscape in postnatal microglia, thereby directing their transcriptome programs - additional datasets	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	39	H5 NARROWPEAK TAB TAR TBI TSV	Keita Saeki	Jul 01, 2024
GSE181557	Kidney cell type specific changes in the chromatin and transcriptome landscapes following epithelial Hdac1 and Hdac2 knockdown	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CSV H5 TBI TSV SRA Run Selector	Kelly Anne Hyndman	Dec 27, 2021
GSE164068	Lamin A/C-dependent chromatin architecture safeguards naïve pluripotency to prevent aberrant cardiovascular cell fate and function [HiC-seq_ESC]	Other	Mus musculus	6	BED BEDGRAPH TBI TXT SRA Run Selector	Gergana Dobreva	Oct 11, 2022
GSE240915	Maternal IL-10 restricts fetal emergency myelopoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	50	MTX TBI TSV TXT	Melissa Proven	Feb 29, 2024
GSE240914	Maternal IL-10 restricts fetal emergency myelopoiesis [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TBI TSV	Melissa Proven	Feb 29, 2024
GSE237199	Mutations from IPEX patients elicit a range of phenotypes in mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	182	MTX TBI TSV TXT	CBDM Lab	Oct 20, 2023