GEO Browser - GEO

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331 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057				NARROWPEAK
GSE190415	Oncogenic RAS triggers stem cell: microenvironment crosstalk to drive malignant progression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2344	NARROWPEAK	Katherine Stewart	Oct 09, 2022
GSE147299	BMP signaling: at the gate between activated melanocyte stem cells and differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1815	BW NARROWPEAK	Katherine Stewart	Nov 12, 2020
GSE168415	DNMT3B supports meso-endoderm differentiation from mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	1606	BW NARROWPEAK	Andrea Lauria	Jan 23, 2023
GSE90850	Epithelial-Mesenchymal Micro-Niches Govern Stem Cell Lineage Choices	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1130	NARROWPEAK TXT	Hanseul Yang	Apr 18, 2017
GSE271007	Stem cells tightly regulate dead cell clearance to maintain tissue fitness	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1093	NARROWPEAK	Katherine Stewart	Jun 28, 2024
GSE146508	Transcriptome and open chromatin analysis of 5-month mouse liver and blood by the TaRGET II consortium	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	849	CSV NARROWPEAK SRA Run Selector	Daofeng Li	May 20, 2020
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE212357	Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	228	BROADPEAK BW NARROWPEAK TXT	Cigall Kadoch	Mar 21, 2023
GSE132444	Dynamic Lineage Priming by ERK is Driven by Transcription Factor-Independent Enhancer Regulation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	220	BED NARROWPEAK TXT	Josh M Brickman	Aug 08, 2019
GSE184137	Esrrb conveys naive pluripotent cells through the formative transcriptional program	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	200	BW NARROWPEAK TXT	Margherita Mutarelli	Jan 25, 2023
GSE108690	Cistromic reprogramming of the diurnal glucocorticoid hormone response by high fat diet	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	176	BROADPEAK GAPPEDPEAK NARROWPEAK	Nina Henriette Uhlenhaut	Oct 21, 2019
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE240030	ATRX guards against aberrant differentiation in mesenchymal progenitor cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	165	BED BW NARROWPEAK	Douglas Barrows	Mar 13, 2024
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE252482	Synthetic reversed sequences reveal default genomic states	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	160	BW NARROWPEAK	Brendan R. Camellato	Jan 16, 2024
GSE184036	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	155	BEDGRAPH BROADPEAK HDF5 NARROWPEAK TSV	Jop Kind	Apr 01, 2022
GSE214845	Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	150	BIGWIG BW MTX NARROWPEAK RDS TSV TXT	Bernard Klaas van der Veer	Apr 12, 2023
GSE135406	Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	145	NARROWPEAK XLSX SRA Run Selector	Jie Wang	May 01, 2020
GSE224513	Cooperative super-enhancer inactivation caused by heterozygous loss of CREBBP and KMT2D skews B-cell fate decisions and accelerates development of T-cell depleted lymphomas.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	143	BIGWIG BROADPEAK BW MTX NARROWPEAK TSV	Christopher Russell Chin	Feb 19, 2024
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022