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1573 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057				BW
GSE104460	PITX1 Promotes Chondrogenesis and Myogenesis in Mouse Hindlimbs Through Conserved Regulatory Targets	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BW	Jialiang Wang	Feb 14, 2018
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Danio rerio Equus caballus Homo sapiens Mus musculus Sus scrofa domesticus	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE131334	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	87	BW TXT	Richard A Young	Apr 21, 2023
GSE250263	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	14	BW NARROWPEAK	Aurelie Hintermann	Apr 17, 2024
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE95781	Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	93	BW SRA Run Selector	Ali Shilatifard	Oct 02, 2017
GSE101646	A cryptic Tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	84	BW SRA Run Selector	Ali Shilatifard	Nov 02, 2017
GSE127121	Variant PRC2.1 and PRC2.2 co-operate to direct H3K27 methylations in ESCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	79	BW	Darren John Fitzpatrick	Sep 11, 2019
GSE136424	CDK-Mediator and FBXL19 cooperate in the induction of developmental genes by promoting regulatory interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	76	BW	Angelika Feldmann	Jan 21, 2020
GSE181951	H3K4 Methylation in β-cells prevents transcriptional downregulation and variance associated with type 2 diabetes.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	30	BW MTX	Brad Hoffman	Aug 11, 2022
GSE185927	Distinct roles for CDK-Mediator in controlling Polycomb-dependent chromosomal interactions and priming genes for induction (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	81	BW SRA Run Selector	Emilia Dimitrova	May 23, 2022
GSE199801	A CpG island-encoded mechanism protects genes from premature transcription termination [SET1_ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	60	BED BW CSV	Emilia Dimitrova	Dec 22, 2022
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE164736	Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BW SRA Run Selector	Shalu Jhanwar	Jul 31, 2021
GSE164737	Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development [RNA-seq]	Expression profiling by high throughput sequencing	Gallus gallus Mus musculus	18	BW SRA Run Selector	Shalu Jhanwar	Jul 31, 2021
GSE164738	Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus Mus musculus	30	BW	Shalu Jhanwar	Jul 31, 2021
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE59176	Prevalent p53 gain-of-function mutants co-opt epigenetic pathways to drive cancer growth	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BEDGRAPH BW TXT SRA Run Selector	Morgan Sammons	Jul 31, 2015