GEO Browser - GEO

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481 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057				BIGWIG
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE85164	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	90	BED BIGWIG	Asifa Akhtar	Mar 28, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE207199	Clockwork orange-mediated control of sugar responsive transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	38	BIGWIG	Krista Kokki	Jun 01, 2023
GSE243873	CCG-1423-derived compounds reduce global RNA synthesis and inhibit transcriptional responses (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	22	BIGWIG	Maria Sokolova	Sep 26, 2023
GSE244232	CCG-1423-derived compounds reduce global RNA synthesis and inhibit transcriptional responses	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	30	BIGWIG	Maria Sokolova	Sep 28, 2023
GSE151488	cis-regulation of Grem1 expression during limb development	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	10	BIGWIG	DBM Bioinformatics Core Facility	Jul 29, 2021
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46	BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE203031	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BED BEDGRAPH BIGWIG NARROWPEAK	Aurelie Hintermann	Jun 20, 2022
GSE60604	An alternative pluripotent state confers interspecies chimaeric competency [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BIGWIG SRA Run Selector	Christopher Benner	May 06, 2015
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE94804	Genome-wide maps of chromatin state in neurosphere cells and breast cancer cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	40	BIGWIG SRA Run Selector	Mark A Zarnegar	Feb 23, 2017
GSE99284	Enhancer reprogramming promotes pancreatic cancer progression and metastasis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	90	BIGWIG SRA Run Selector	Jae Seok Roe	Jul 31, 2017
GSE99311	Enhancer reprogramming promotes pancreatic cancer progression and metastasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	136	BIGWIG TXT	Jae Seok Roe	Jul 31, 2017
GSE100400	Episomal HBV persistence within transcribed host nuclear chromatin compartments involves HBx	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	31	BIGWIG SRA Run Selector	Jan Postberg	Apr 30, 2018
GSE100647	Che-1/AATF sustains cell growth and global transcription in Multiple Myeloma through the maintenance of open chromatin structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	30	BIGWIG BW	Matteo Pallocca	Jun 07, 2021
GSE112417	Histone Variant H2A.Z Defines Cell Identity in Vascular Smooth Muscle Cells as Revealed by Single-Cell Transcriptomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BIGWIG CSV TXT SRA Run Selector	Li Wang	Jun 08, 2018
GSE115463	TP63-mediated enhancer reprogramming drives the squamous subtype of pancreatic ductal adenocarcinoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	92	BIGWIG	Tim D D Somerville	Nov 13, 2018
GSE124190	PLZF limits enhancer activity during hematopoietic progenitor aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	41	BIGWIG BW TXT SRA Run Selector	Mathilde Poplineau	Dec 21, 2018
GSE134125	The RNA hairpin binder TRIM71 modulates alternative splicing by repressing MBNL1	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BIGWIG TSV	Panagiotis Papasaikas	Aug 01, 2019