GEO Browser - GEO

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474 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417				TXT
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE173224	Full-length dystrophin restoration via targeted genomic integration by AAV-CRISPR in a humanized mouse model of Duchenne muscular dystrophy	Other	Mus musculus	186	BAM TXT SRA Run Selector	Adrian Oliver	Apr 24, 2021
GSE44935	The Role of Tet1 During Somatic Cell Reprogramming	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Lihui Lin	Mar 08, 2013
GSE62050	High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq using drop-based microfluidics	Expression profiling by high throughput sequencing	Mus musculus	6	BED TXT SRA Run Selector	oren ram	Jun 05, 2015
GSE66092	PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage.	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BED BEDGRAPH TXT SRA Run Selector	Hun-Way Hwang	Feb 19, 2016
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015
GSE71154	m6A-CLIP identified major presence of m6A in last exons	Other	Homo sapiens Mus musculus	8	BED BEDGRAPH TXT SRA Run Selector	Shengdong Ke	Sep 28, 2015
GSE73225	SOX9 modulates the expression of key transcription factors required for heart valve development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	5	BED TXT SRA Run Selector	Pamela A. Hoodless	Nov 05, 2015
GSE77788	Phosphatidylinositol 3-Kinase (PI3K) delta blockade increases genomic instability in B cells	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	162	BED TXT SRA Run Selector	Roberto Chiarle	Jan 31, 2017
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE82255	Destabilization of B2 RNA by EZH2 activates the stress response	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	61	BED BW TXT SRA Run Selector	Athanasios Zovoilis	Dec 19, 2016
GSE84762	Inactivation of Ezh2 upregulates Gfi1 and drives aggressive Myc-driven Group 3 medulloblastoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	62	BED TXT	David Finkelstein	Mar 01, 2017
GSE85731	Epigenetic memory of obesity in mouse colonic epithelium	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Dec 19, 2017
GSE87548	Layer-specific ATAC-seq of the neurons of adult mouse visual cortex defined by Cre-driver lines	Other	Mus musculus	20	BED BROADPEAK NARROWPEAK TXT SRA Run Selector	Lucas T Gray	Jan 01, 2017
GSE103248	RNAseq in control and shQk KD mouse neural stem cells, and Qki5 CLIP in E14.5 mouse brain	Expression profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH TXT	Masato Yano	Dec 08, 2017
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE111205	The bipartite TAD organization of the X-inactivation centre ensures opposing developmental regulation of Tsix and Xist	Expression profiling by high throughput sequencing Other	Mus musculus	73	BED MATRIX TXT SRA Run Selector	Nicolas Servant	May 27, 2019
GSE120666	Characterisation by Next generation Capture-C of Pax6 locus in three mouse cell lines (MV+, RAG and β-TC3 cells).	Other	Mus musculus	20	BED BEDGRAPH TXT SRA Run Selector	nick gilbert	Oct 18, 2018
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019