Pausing of RNA polymerase II regulates mammalian developmental potential

Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes

A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [mESCs]

A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [T-cells]

MAPCap enables high-resolution detection and differential expression analysis of transcription start sites

Long-range joining of intra-chromosomal DNA double-strand breaks

The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [3C-HTGTS]

The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [HTGTS V(D)J-seq]

Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [3C-HTGTS]

Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [CSR-HTGTS-Seq]

Peyer’s Patch Germinal Centers Select Innate-like BCRs

Induction of Recurrent Break Cluster Genes in Neural Progenitor Cells Differentiated from Embryonic Stem Cells In Culture [HTGTS-Seq]

CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning [LAM-HTGTS]

CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning [3C-HTGTS]

Dissecting immune circuits by linking CRISPR pooled screens with single cell RNA-seq [SET2]

Simultaneous profiling of transcriptome and DNA methylome from a single cell

Ovarian senescence, transcriptomic, and epigenomic changes with aging

Subcellular whole transcriptome profiling reveals the RNA composition of motor axons

hnRNP R and its main interactor, the noncoding RNA 7SK, coregulate the axonal transcriptome of motoneurons

Single-cell RNA-seq reveals disparate macrophage responses to intracellular Salmonella