GEO Browser - GEO

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540 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417				SRA Run Selector
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE43078	The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse	Expression profiling by high throughput sequencing	Mus musculus	2	TXT SRA Run Selector	Frederic Koch	Jan 28, 2013
GSE43247	ChIP-seq analysis of PHF20 and Wdr5 binding sites in ESCs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED SRA Run Selector	Stephen D Ayers	Dec 06, 2013
GSE43390	Pausing of RNA polymerase II regulates mammalian developmental potential	Expression profiling by high throughput sequencing Other	Mus musculus	12	BEDGRAPH BW SRA Run Selector	Karen Adelman	Mar 12, 2015
GSE44935	The Role of Tet1 During Somatic Cell Reprogramming	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Lihui Lin	Mar 08, 2013
GSE45157	Trans-chromosomal regulation by a novel lincRNA required for adipogenesis that escapes X-chromosome inactivation	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	21	TAB TXT SRA Run Selector	Loyal A Goff	Jun 01, 2013
GSE46748	Obesity, rather than diet, drives epigenomic alterations in colonic epithelium resembling cancer progression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BEDGRAPH SRA Run Selector	ruifang li	Jan 16, 2014
GSE48206	Gene Expression Profile for knocking down Tet1 in pre-iPSCs culturing in Vc medium.	Expression profiling by high throughput sequencing	Mus musculus	6	TXT SRA Run Selector	Lihui Lin	Oct 27, 2013
GSE48436	The THO complex regulates pluripotency gene mRNA export to control embryonic stem cell self-renewal and somatic cell reprogramming (RNA-IP)	Expression profiling by high throughput sequencing	Mus musculus	2	BW SRA Run Selector	Li Wang	Nov 30, 2013
GSE49137	INO80 complex in the core regulatory network governing ESC self-renewal [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED BW SRA Run Selector	Li Wang	May 16, 2014
GSE50776	c-Jun impedes somatic cell reprogramming by activating mesenchymal core regulators and suppressing pluripotent ones	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	TXT XLS SRA Run Selector	Lihui Lin	Jun 10, 2015
GSE50907	fourSig: A Method for Determining Chromosomal Interactions in 4C-Seq Data	Other	Mus musculus	3	TXT SRA Run Selector	Rex Lee Williams	Feb 22, 2014
GSE51170	Identification of building principles of methylation states at CG rich regions by high-throughput editing of a mammalian genome	Methylation profiling by high throughput sequencing	Escherichia coli Mus musculus synthetic construct	19	TXT SRA Run Selector	Dirk Schuebeler	Sep 30, 2014
GSE52281	4C-seq indicate interactive sites with the sequence close from Meis2 promoter	Other	Mus musculus	1	BED WIG SRA Run Selector	Takaho A. Endo	Jan 15, 2014
GSE52583	High throughput quantitative whole transcriptome analysis of distal mouse lung epithelial cells from various developmental stages (E14.5, E16.5, E18.5 and adult)	Expression profiling by high throughput sequencing	Mus musculus	201	FPKM_TRACKING SRA Run Selector	Barbara Treutlein	Apr 08, 2014
GSE52595	Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation (4C-seq)	Other	Mus musculus	6	WIG SRA Run Selector	Christopher R Vakoc	Dec 02, 2013
GSE52988	Attenuated sensing of SHH underlies adaptive evolution of bovine limbs	Other	Mus musculus	3	TXT SRA Run Selector	DBM Bioinformatics Core Facility	Jun 19, 2014
GSE53755	Long-range joining of intra-chromosomal DNA double-strand breaks	Genome variation profiling by high throughput sequencing	Mus musculus	13	TXT SRA Run Selector	Frederick Alt	Jan 03, 2014
GSE53913	RNF17 referees ping-pong in mouse testes [RNAseq]	Expression profiling by high throughput sequencing	Mus musculus	8	TXT SRA Run Selector	Vasily Vagin	Dec 17, 2014