GEO Browser - GEO

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41 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417				BIGWIG
GSE134020	Mammalian RNA decay pathways are highly specialized and widely linked to translation	Expression profiling by high throughput sequencing Other	Mus musculus	183	BIGWIG TXT WIG SRA Run Selector	Alex Charles Tuck	Jan 29, 2020
GSE64960	Sexual cell fate reprogramming in the ovary by DMRT1	Expression profiling by high throughput sequencing	Mus musculus	144	BIGWIG CSV SRA Run Selector	Micah Gearhart	Feb 27, 2015
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE194253	Thymic epithelial cells co-opt lineage-defining transcription factors to eliminate autoreactive T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	82	BIGWIG MTX TSV TXT	CBDM Lab	Jun 16, 2022
GSE163895	Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	78	BIGWIG TXT	Atsushi Onodera	May 13, 2021
GSE178838	GLI transcriptional repression is inert prior to HH pathway activation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	67	BIGWIG BW TXT SRA Run Selector	Steven A. Vokes	Jan 21, 2022
GSE256232	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BIGWIG	Ruitu Lyu	Jun 20, 2024
GSE240074	GLIS3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	63	BED BIGWIG	Hong Soon Kang	Dec 31, 2023
GSE225661	Hnf4 controls gut and liver gene programs in the thymus	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	60	BIGWIG BW	CBDM Lab	Jun 26, 2023
GSE130390	NFIA differentially controls adipogenic and myogenic gene program through distinct pathways to ensure adipocyte differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	57	BIGWIG TXT	Hironori Waki	Sep 22, 2020
GSE200194	NFIA in adipocytes reciprocally regulates mitochondrial and inflammatory gene program to improve glucose homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	54	BIGWIG TXT	Yuta Hiraike	Jul 25, 2023
GSE137098	Embryonic stem cell-derived neurons as a model system for epigenome maturation during development	Methylation profiling by high throughput sequencing Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	53	BIGWIG GTF TXT SRA Run Selector	Ryan Lister	Jul 25, 2023
GSE92654	Aire, guardian of immunological tolerance, binds to and activates super-enhancers	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	51	BIGWIG CEL	CBDM Lab	Jan 22, 2017
GSE83764	NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	48	BIGWIG TXT	Hironori Waki	Aug 14, 2017
GSE85731	Epigenetic memory of obesity in mouse colonic epithelium	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT SRA Run Selector	Paul A Wade	Dec 19, 2017
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH BEDPE BIGWIG BW HIC TXT WIG	Sergio Niñerola	Dec 04, 2023
GSE136650	Induction of autoreactive regulatory T cells through promiscuous gene expression by bone marrow-resident Aire+ antigen-presenting cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	33	BED BIGWIG TXT	Philipp Beckhove	Aug 26, 2022
GSE256229	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq [Mouse KAS-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BED BIGWIG	Ruitu Lyu	Jun 21, 2024
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE83757	NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers (chromatin)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BEDGRAPH BIGWIG SRA Run Selector	Hironori Waki	Aug 14, 2017