GEO Browser - GEO

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75 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057		Homo sapiens		BED
GSE209627	Genomic binding of NF-Y in mouse and human cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BIGWIG	Diletta Dolfini	Aug 01, 2024
GSE256232	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BIGWIG	Ruitu Lyu	Jun 20, 2024
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE240030	ATRX guards against aberrant differentiation in mesenchymal progenitor cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	165	BED BW NARROWPEAK	Douglas Barrows	Mar 13, 2024
GSE250519	A mucus production programme promotes classical pancreatic ductal adenocarcinoma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BED BW	Olaf Klingbeil	Jan 24, 2024
GSE231719	Light-Assisted Single-Stranded DNA Open-Chromatin Analysis in Single Spatially Localized Neuronal Cells Identifies the Capacity of Endogenous DNA to Act Catalytically [CHEX-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	417	BED MTX TXT	Junhyong Kim	Oct 19, 2023
GSE232216	Light-Assisted Single-Stranded Open-Chromatin Analysis in K562 and Spatially Localized Neuronal Single Cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	445	BED	Junhyong Kim	Oct 19, 2023
GSE197060	Development of nanoRibo-seq enables study of regulated translation by cortical neuron subtypes, showing uORF translation in synaptic-axonal genes	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	45	BED CSV TXT	John Edward Froberg	Aug 25, 2023
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE207163	Transcriptional repression by a secondary DNA binding surface of DNA topoisomerase I safeguards against hypertranscription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BED BW RESULTS TXT XLSX	Zhenhua hu	May 29, 2023
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE195688	Lineage-Specific Differences and Inference of Regulatory Networks Governing Human Chondrocyte Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	46	BED NARROWPEAK TXT XLSX	Daniel Richard	Apr 03, 2023
GSE216464	Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BED MTX TSV	Jason Buenrostro	Mar 28, 2023
GSE186589	Epigenetic dysregulation from chromosomal transit in micronuclei	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	187	BED BIGWIG BW TDF TXT	Albert S Agustinus	Mar 13, 2023
GSE224702	mouse RNA-seq, human RNA-seq, ATAC-seq, and scRNA-seq analyses data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	45	BED TXT	Kenichi Asano	Mar 13, 2023
GSE186349	Acetylation of histone H2B marks active enhancers and predicts CBP/p300 target genes	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	41	BED BW SRA Run Selector	Chunarum Choudhary	Feb 23, 2023
GSE171599	MacroH2A histone variants modulate enhancer activity to repress oncogenic programs and cellular reprogramming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	44	BED BIGWIG BW H5 SRA Run Selector	Alexandre Gaspar-Maia	Feb 21, 2023
GSE204974	Recycling of H2A-H2B provides short-term memory of chromatin states [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	54	BED BW	Anja Groth	Feb 06, 2023
GSE179705	Cancer-associated fibroblasts recapitulate phenotypes and functions across tumor types and species	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BED MTX TSV SRA Run Selector	Michael Januszyk	Feb 01, 2023
GSE156829	Spurious intragenic transcription is a feature of mammalian cellular senescence and tissue aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	47	BED BW	Gregory Donahue	Jan 02, 2023