lineage,synonyms,aa_definition,nt_definition,VinOEBS,VinTEBS,status,NCATS_link,doubling_time_mo_usa,doubling_time_bw_usa,doubling_time_mo_not_usa,doubling_time_bw_not_usa
A,,"nsp4:S76,ORF8:L84S","C8782T,T28144C",,,,,,,,
A.1,,"nsp13:Y541C,ORF8:L84S","A17858G,T28144C",nsp13:Y541C,,,,,,,
A.11,,"S:D936,N:S202N","C24370T,G28878A,G29742A",,,,,,,,
A.2,,"ORF8:L84S,N:S197L","T28144C,C28863T",,,,,,,,
A.2.2,,"nsp3:Y607,nsp4:S76,nsp4:F308Y,RdRp:Y455,ORF3a:G196V,ORF8:L84S,N:P13L,N:D128,N:S197L","C4540T,C8782T,T9477A,C14805T,G25979T,T28144C,C28311T,C28657T,C28863T","N:P13L,ORF3a:G196V",,,,,,,
A.2.3,,"nsp3:Y607,nsp4:S76,nsp4:F308Y,RdRp:Y455,ORF3a:G196V,ORF3a:Q213K,ORF8:L84S,N:S197L","C4540T,C8782T,T9477A,C14805T,G25979T,C26029A,T28144C,C28863T",ORF3a:G196V,,,,,,,
A.2.5,,"nsp13:D207,ORF3a:S74F","T16857C,C25613T",,,,,,,,
A.2.5.1,,"nsp1:L4F,nsp2:N254,nsp2:A306V,nsp3:L923,nsp14:D126,S:K1045","C275T,C1567T,C1722T,A5488G,T18417C,G24697A",,,,,,,,
A.2.5.2,,"nsp2:N254,nsp6:H11Q,RdRp:M629T,nsp13:D207,nsp14:D126","C1567T,C11005A,T15326C,T16857C,T18417C",,,,,,,,
A.21,,"3CLpro:N28,nsp6:V149F,S:D614N,ORF8:L84S","C10138T,G11417T,G23402A,T28144C",S:D614N,,,,,,,
A.23.1,,"nsp6:M86I,nsp6:L98F","G11230T,G11266T",,,,,,,,
A.25,,"nsp3:T942I,nsp6:M86I","C5544T,G11230T",,,,,,,,
A.26,,"nsp1:D33,nsp6:M86I,N:S202N","C364T,G11230T,G28878A",,,,,,,,
A.27,,nsp14:L109,"A18366G,A28273T",,,,,,,,
A.28,,"nsp1:V86F,3CLpro:A266T,N:A35V","G521T,G10850A,C28377T","3CLpro:A266T,N:A35V",,,,,,,
A.29,,"nsp16:K137,S:F565L","A21069G,T23255C",S:F565L,,,,,,,
A.3,,"nsp8:M129I,nsp14:F233L","G12478A,T18736C",,,,,,,,
A.4,,"nsp13:V49I,nsp13:T547","G16381A,T17877C",,,,,,,,
A.5,,"ORF3a:I232,ORF8:L84S","C26088T,T28144C",,,,,,,,
A.6,,"nsp3:L75,nsp3:L557F","C2942T,G4390T",,,,,,,,
AA.2,,"nsp1:E37K,nsp2:V6,nsp3:Y817,S:A163","G374A,C823T,C5170T,G22051T,T29791C",,,,,,,,
AA.3,,"nsp1:E37K,nsp3:Y817,3CLpro:F8,nsp6:A54S,nsp6:V149F,S:A163,ORF3a:V112,N:P302","G374A,C5170T,C10078T,G11132T,G11417T,G22051T,C25728T,G29179T",,,,,,,,
AA.4,,"nsp2:G15,nsp13:K524","C850T,G17808A,T29791C",,,,,,,,
AA.5,,"nsp2:P624S,nsp4:Y311,3CLpro:F8,nsp6:V149F","C2675T,C9487T,C10078T,G11417T",,,,,,,,
AA.7,,"nsp1:E37K,nsp3:V521I,N:P302","G374A,G4280A,G29179T",,,,,,,,
AA.8,,"nsp3:Y817,nsp15:S308,N:P199S","C5170T,C20544T,C28868T",,,,,,,,
AC.1,,"nsp6:M100I,ORF10:V32L","G11272C,G29651T",,,,,,,,
AD.2,,"nsp2:I120F,nsp3:N179,nsp3:P968L,RdRp:E254D,nsp15:T33I","A1163T,T3256C,C5622T,G14202T,C19718T",,,,,,,,
AE.2,,"nsp1:L16,nsp3:A994D,nsp15:V317F","G219T,C313T,C5700A,G20569T",,,,,,,,
AE.4,,"nsp1:L16,nsp3:A994D,ORF8:S24","C313T,C5700A,A27965T",,,,,,,,
AE.6,,"nsp1:E37D,nsp3:P192","G376T,T3295C",,,,,,,,
AE.7,,"nsp3:F1503I,nsp15:S243I","T7226A,G20348T",nsp3:F1503I,,,,,,,
AF.1,,"nsp3:G171C,N:N192","G3230T,C28849T",,,,,,,,
AH.2,,"nsp6:K270,S:V3G,S:L5F,S:L841F,S:T859I,ORF3a:D27,ORF8:F120","A11782G,T21570G,C21575T,C24083T,C24138T,T25473C,C28253T","S:L5F,S:L841F,S:T859I",,,,,,,
AK.1,,"nsp2:L578V,nsp8:V34F,nsp13:F81,nsp13:N257,M:L56","T2537G,G12191T,T16479C,T17007C,G26690T",,,,,,,,
AM.3,,"nsp13:Y149F,N:K127R","A16682T,A28653G",N:K127R,,,,,,,
AN.1,,"nsp2:GL265,nsp8:L9F","AGGTCTT1597A,C12116T",,,,,,,,
AP.1,,"RdRp:V844,N:Q9H","A15972G,G28300C",N:Q9H,,,,,,,
AS.1,,"nsp3:N891,S:L54F","C5392T,G21724T",S:L54F,,,,,,,
AS.2,,"S:D936H,N:A211V","G24368C,C28905T","N:A211V,S:D936H",,,,,,,
AV.1,,"RdRp:S434A,S:I1130V","T14740G,A24950G",,,,,0.0,0.0,67432.99,15322205.0
AY.10,Delta,"nsp9:T24I,S:T724","C12756T,A23734G",,,,,0.0,0.0,3314.52,6019.76
AY.100,Delta,"nsp4:Y335,nsp13:A296S","C9559T,G17122T",,,,,60.5,129.29,188.07,399.86
AY.101,Delta,"nsp2:D40,ORF3a:A23V,ORF8:P38","C925T,C25460T,T28007C",ORF3a:A23V,,,,0.0,0.0,260.26,592.47
AY.102,Delta,"nsp2:V230,nsp3:A488S,nsp3:P1228L,nsp3:P1469S,nsp4:D144,nsp4:V167L,nsp6:T77A,nsp6:V120,nsp14:A394V,ORF7a:P99","G1495T,G4181T,C6402T,C7124T,C8986T,G9053T,A11201G,A11332G,C19220T,A27690T",,,,,0.0,0.0,0.0,0.0
AY.103,Delta,S:I882,C24208T,,,,,49.64,104.14,40.3,83.13
AY.103.1,Delta,"nsp13:A135S,nsp14:L107","G16639T,A18360G",,,,,0.0,0.0,1657.24,1838.59
AY.104,Delta,"nsp1:N160,GFL:P8,S:T572I","C745T,T13048C,C23277T",S:T572I,,,,0.0,0.0,468.69,1168.01
AY.105,Delta,"nsp2:F86,nsp3:P74S","C1063T,C2939T",,,,,414.53,840.12,0.0,0.0
AY.106,Delta,"nsp4:T419,S:S255F,ORF7b:T40I","C9811T,C22326T,C27874T",S:S255F,,,,282.55,714.8,189.02,466.78
AY.107,Delta,"RdRp:Q524,S:H1101Y","A15012G,C24863T",S:H1101Y,,,,321.3,814.2,122.99,250.25
AY.108,Delta,"nsp1:N160,nsp3:S1370F","C745T,C6828T",,,,,0.0,0.0,631.57,873.53
AY.109,Delta,"nsp6:Q208R,RdRp:I466V","A11595G,A14836G",,,,,882.41,1454.19,127.04,256.82
AY.11,Delta,"nsp3:A256V,nsp14:R163C","C3486T,C18526T",,,,,0.0,0.0,0.0,0.0
AY.110,Delta,"nsp1:KSF141,nsp2:S36Y","AAAGTCATTT685A,C912A",,,,,53.67,112.66,31.36,68.33
AY.111,Delta,"nsp3:A579,N:P207S","C4456T,C28892T",N:P207S,,,,0.0,0.0,215.55,446.87
AY.112.1,Delta,"nsp3:E426D,N:P383","A3997T,G29422T",nsp3:E426D,,,,0.0,0.0,0.0,0.0
AY.112.2,Delta,"ORF3a:L85F,ORF7a:E41,N:G215C","G25647T,G27516A,G28916T",N:G215C,,,,0.0,0.0,301.83,923.85
AY.113,Delta,"nsp4:T204I,nsp9:L29","C9165T,A12772G",,,,,102.47,225.67,137.32,270.1
AY.114,Delta,"nsp13:V226,nsp15:Q19H","G16914T,G19677T",,,,,123.19,300.68,498.23,1143.1
AY.116.1,Delta,3CLpro:I213V,A10691G,3CLpro:I213V,,,,48.12,104.48,51.29,105.63
AY.117,Delta,"RdRp:R249M,RdRp:N790","G14186T,C15810T",,,,,118.68,260.14,46.86,98.01
AY.118,Delta,ORF6:E46V,A27338T,,,,,144.45,318.74,47.38,99.9
AY.119,Delta,nsp14:A323S,G19006T,,,,,53.42,111.57,39.86,64.12
AY.119.1,Delta,"nsp3:A85V,ORF3a:Q213H,M:C33","C2973T,G26031T,T26621C",,,,,0.0,0.0,0.0,0.0
AY.119.2,Delta,"nsp14:A323S,S:Q675H","G19006T,G23587C",S:Q675H,,,,88.48,174.08,0.0,0.0
AY.120,Delta,"nsp3:S1230F,S:S1147","C6408T,A25003G",,,,,354.25,593.23,61.67,132.71
AY.120.1,Delta,"nsp6:A41,S:S1147","C11095T,A25003G",,,,,143.71,318.75,0.0,0.0
AY.120.2.1,Delta,"GFL:I38,S:S1147","C13138T,A25003G",,,,,0.0,0.0,2573.76,4230.75
AY.121,Delta,"GFL:H48,ORF3a:V202L","C13168T,G25996T",ORF3a:V202L,,,,91.6,189.79,43.3,90.56
AY.121.1,Delta,"GFL:H48,nsp13:H164Y","C13168T,C16726T",nsp13:H164Y,,,,82.2,170.4,47.92,99.38
AY.122,Delta,"nsp2:K81N,nsp6:T77A","G1048T,A11201G",,,,,137.32,302.6,48.55,101.75
AY.122.1,Delta,"nsp2:K81N,nsp16:T93,S:T791I","G1048T,G20937T,C23934T",S:T791I,,,,975.22,2638.6,0.0,0.0
AY.122.2,Delta,"RdRp:C151Y,RdRp:Q444","G13892A,G14772A",,,,,0.0,0.0,4628.43,5534.75
AY.122.3,Delta,"nsp13:A368T,N:G200","G17338A,C28873A",,,,,0.0,0.0,27890.7,44485.23
AY.122.4,Delta,"nsp2:K81N,nsp15:D335,nsp16:T93","G1048T,T20625C,G20937T",,,,,1557.66,8603.85,1443.34,2938.34
AY.122.5,Delta,"nsp2:K81N,nsp16:P134S,ORF7a:P45S","G1048T,C21058T,C27526T",,,,,0.0,0.0,0.0,0.0
AY.122.6,Delta,"nsp3:N891,S:Y707","C5392T,C23683T",,,,,510.06,1327.77,68.95,145.49
AY.123.1,Delta,"nsp2:A31V,nsp3:A1600","C897T,A7519C",,,,,0.0,0.0,3980.22,37888.94
AY.124,Delta,nsp16:P215T,C21301A,,,,,69.95,148.18,46.42,98.21
AY.124.1,Delta,"nsp16:P215T,ORF3a:D222,N:A119S","C21301A,C26058T,G28628T",N:A119S,,,,0.0,0.0,393.25,993.76
AY.124.1.1,Delta,"ORF3a:A110S,ORF3a:D222,N:A119S","G25720T,C26058T,G28628T",N:A119S,,,,0.0,0.0,391.42,983.04
AY.125,Delta,"RdRp:Q822H,M:V88","G15906T,A26786G",,,,,653.75,1135.83,61.33,126.48
AY.126,Delta,"nsp16:K160R,S:I850L","A21137G,A24110C",S:I850L,,,,439.93,844.17,63.71,134.38
AY.127,Delta,"ORF3a:G49V,ORF3a:T221K","G25538T,C26054A",,,,,102.04,221.62,75.56,155.42
AY.127.1,Delta,ORF3a:T221K,"G242A,C26054A",,,,,1047.38,5571.51,879.77,1229.16
AY.128,Delta,"nsp13:V187L,ORF8:F86S","G16795T,T28150C",,,,,0.0,0.0,809.08,1993.29
AY.129,Delta,"nsp16:D179G,ORF8:I88T","A21194G,T28156C",,,,,1399.61,3551.26,47.22,98.64
AY.13,Delta,"nsp13:R390,nsp14:G143","A17406G,A18468G",,,,,157.49,320.75,0.0,0.0
AY.130,Delta,"nsp1:S142,nsp14:Q343","A691G,A19068G",,,,,0.0,0.0,0.0,0.0
AY.131,Delta,"RdRp:P323S,ORF8:S54*","C14407T,C28054G",ORF8:S54*,,,,0.0,0.0,0.0,0.0
AY.132,Delta,"nsp6:K63,nsp14:M58I","G11161A,G18213A",,,,,0.0,0.0,3555.66,26898.62
AY.133,Delta,"nsp3:H682Y,nsp7:S61,S:D936","C4763T,C12025T,C24370T",,,,,0.0,0.0,0.0,0.0
AY.134,Delta,"nsp3:S1314,nsp4:S410N","T6661C,G9783A",,,,,0.0,0.0,1903.25,11277.13
AY.14,Delta,"nsp14:S374F,nsp16:M20I","C19160T,G20718T",,,,,189.38,422.92,4255.22,4846.51
AY.15,Delta,"nsp2:P129L,nsp2:G154,nsp3:P822L,nsp6:V149A,nsp9:Y87,nsp13:R212,nsp14:P46L,nsp14:S374F,nsp15:L214","C1191T,C1267T,C5184T,T11418C,T12946C,A16872G,C18176T,C19160T,A20262G",,,,,1084.23,2155.61,0.0,0.0
AY.16,Delta,"nsp2:P129L,nsp2:G154,nsp4:A446V,nsp6:V149A,nsp9:Y87,nsp14:P46L,nsp14:G143,ORF3a:V228","C1191T,C1267T,C9891T,T11418C,T12946C,C18176T,A18468G,T26076A",,,,,139.95,311.36,93.92,212.34
AY.16.1,Delta,"nsp3:N1896,nsp8:N109S","C8407T,A12417G",,,,,0.0,0.0,15953.19,13118.66
AY.17,Delta,"nsp2:I479V,nsp13:G400","A2240G,C17436T",,,,,0.0,0.0,1711.08,7313.24
AY.2,Delta,"nsp3:D112,nsp14:L177","T3055C,C18570T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=AY,2039.39,3620.35,0.0,0.0
AY.20,Delta,"nsp2:A419V,S:V1104L","C2061T,G24872T",S:V1104L,,,,176.52,437.37,236.69,594.87
AY.20.1,Delta,ORF3a:R30L,"G25481T,C27393T",ORF3a:R30L,,,,0.0,0.0,0.0,0.0
AY.21,Delta,"ORF3a:L85,ORF8:R101L","G25647A,G28195T",,,,,0.0,0.0,0.0,0.0
AY.22,Delta,"nsp8:Y135,RdRp:V257F","T12496C,G14209T",,,,,0.0,0.0,802.44,2528.48
AY.23,Delta,"nsp2:P200L,nsp3:T678I,S:V1264L","C1404T,C4752T,G25352T","S:V1264L,nsp3:T678I",,,,2981.44,2418.21,345.61,704.79
AY.23.1,Delta,"nsp3:T1606,RdRp:E436","A7537G,A14748G",,,,,0.0,0.0,0.0,0.0
AY.23.2,Delta,"nsp2:P200L,nsp3:A333","C1404T,T3718A",,,,,0.0,0.0,4916.2,13920.37
AY.24,Delta,"nsp6:V149A,S:T778,ORF3a:P104S","T11418C,C23896T,C25702T",,,,,619.67,1763.13,396.61,880.92
AY.25,Delta,ORF3a:E239Q,G26107C,ORF3a:E239Q,,,,51.32,107.6,53.87,113.54
AY.25.1,Delta,nsp6:C197F,G11562T,,,,,57.92,120.27,51.21,109.43
AY.25.1.1,Delta,"nsp2:E587K,nsp3:D410G,nsp3:A488S,nsp3:P1228L,nsp3:P1469S,nsp4:D144,nsp4:V167L,nsp6:T77A,nsp6:V120,nsp6:C197F,RdRp:G671S,nsp13:P77L,nsp14:A394V,S:T19R,S:EFR156G,S:L452R,S:P681R,S:D796Y,S:D950N,ORF3a:S26L,ORF3a:E239Q,M:I82T,ORF7a:G38,ORF7a:V82A,ORF7a:T120I,ORF7b:T40I,ORF8:DF119,N:M1,N:D63G,N:R203M,N:G215C,N:D377Y","G210T,G2564A,A3948G,G4181T,C6402T,C7124T,C8986T,G9053T,A11201G,A11332G,G11562T,G15451A,C16466T,C19220T,C21618G,GAGTTCA22028G,T22917G,C23604G,G23948T,G24410A,C25469T,G26107C,T26767C,A27507C,T27638C,C27752T,C27874T,AGATTTC28247A,AAAA28271AAA,A28461G,G28881T,G28916T,G29402T,G29742T","S:D950N,ORF3a:E239Q,ORF3a:S26L,N:G215C,S:T19R,S:P681R,S:D796Y,N:D377Y,N:D63G",S:L452R,,,0.0,0.0,0.0,0.0
AY.25.1.2,Delta,nsp2:E587K,"G2564A,C26228T",,,,,1162.84,1845.43,0.0,0.0
AY.25.2,Delta,"nsp3:M1592V,nsp9:R39K,S:G413,ORF3a:E239Q","A7493G,G12801A,G22801T,G26107C",ORF3a:E239Q,,,,0.0,0.0,1504.06,3392.36
AY.25.3,Delta,"nsp9:R39K,nsp13:L438,S:S221L,S:G413,ORF3a:E239Q","G12801A,C17550T,C22224T,G22801T,G26107C","ORF3a:E239Q,S:S221L",,,,65.57,134.16,0.0,0.0
AY.26,Delta,ORF6:K48N,A27345T,,,,,58.79,126.95,53.65,112.44
AY.27,Delta,"RdRp:G345,M:A81S","A14475G,G26763T",,,,,610.65,1011.87,0.0,0.0
AY.28,Delta,"nsp2:K454N,S:A701S","G2167T,G23663T",S:A701S,,,,0.0,0.0,902.5,2404.4
AY.29,Delta,"nsp3:Y840,nsp3:V932A","C5239T,T5514C",,,,,0.0,0.0,50.25,103.68
AY.29.1,Delta,"nsp3:V932A,S:Q173H","T5514C,G22081T",S:Q173H,,,,0.0,0.0,0.0,0.0
AY.29.2,Delta,"nsp7:A48,S:Q414R","C11986A,A22803G",,S:Q414R,,,0.0,0.0,0.0,0.0
AY.3,Delta,nsp6:I162V,A11456G,,,,,54.43,117.25,51.34,106.8
AY.3.1,Delta,"nsp3:D309Y,nsp6:I162V,S:D574","G3644T,A11456G,T23284C",,,,,87.48,195.07,0.0,0.0
AY.3.3,Delta,"nsp8:Y149,S:D574","T12538C,T23284C",,,,,1410.94,1742.69,0.0,0.0
AY.3.4,Delta,"nsp3:C1347W,ORF8:P85S","T6760G,C28146T",nsp3:C1347W,,,,0.0,0.0,393425.4,36637.19
AY.30,Delta,"RdRp:V14,S:V1061","A13482G,C24745T",,,,,0.0,0.0,986.07,1306.11
AY.31,Delta,"nsp3:M196T,S:S640P","T3306C,T23480C",S:S640P,,,,0.0,0.0,0.0,0.0
AY.32,Delta,"nsp4:N244,nsp16:R216C,S:K854","C9286T,C21304T,G24124A",,,,,0.0,0.0,488.58,1013.6
AY.33,Delta,"S:T29A,S:T250I","A21647G,C22311T","S:T250I,S:T29A",,,,567.9,1076.73,71.48,158.34
AY.33.1,Delta,"nsp3:A488V,nsp6:M47V","C4182T,A11111G",,,,,0.0,0.0,0.0,0.0
AY.33.2,Delta,"ORF3a:Y107S,ORF3a:N119Y","A25712C,A25747T",,,,,0.0,0.0,56.65,123.5
AY.34,Delta,"S:Q677H,ORF3a:E239","G23593C,G26109A",S:Q677H,,,,72.43,145.78,60.33,128.68
AY.34.1,Delta,"S:Q677H,N:L230F","G23593C,C28961T","S:Q677H,N:L230F",,,,545.65,980.45,59.57,127.81
AY.34.1.1,Delta,"nsp3:A1766,nsp14:M72I,M:L164","G8017T,G18255T,G27014T",,,,,0.0,0.0,56.79,124.11
AY.34.2,Delta,"S:Q677H,S:T859I","G23593C,C24138T","S:Q677H,S:T859I",,,,0.0,0.0,96.63,216.58
AY.35,Delta,"nsp13:L227,nsp13:E420","C16915T,A17496G",,,,,456.5,1287.69,0.0,0.0
AY.36,Delta,RdRp:C730R,T15628C,,,,,60.37,124.77,41.02,88.53
AY.36.1,Delta,"nsp2:V530,nsp15:E304","C2395T,A20532G",,,,,0.0,0.0,728.82,1617.24
AY.37,Delta,nsp16:L85,T20911C,,,,,68.52,141.27,45.94,95.28
AY.39,Delta,"nsp16:Q238H,ORF7a:V71I","G21372T,G27604A",,,,,52.91,113.84,1070.44,1587.88
AY.39.1,Delta,"RdRp:V14,nsp16:Q238H","A13482G,G21372T",,,,,107.03,219.85,474.01,862.59
AY.39.1.1,Delta,nsp14:L508F,G19563T,,,,,53.38,110.09,44.6,95.66
AY.39.2,Delta,"nsp3:K999N,S:K1073N","G5716T,G24781C",S:K1073N,,,,267.78,521.02,14369.09,22490.84
AY.39.3,Delta,"nsp3:A488S,nsp3:P1228L,nsp4:D144,nsp4:V167L,nsp6:T77A,nsp6:V120,nsp14:V14L,nsp14:A394V,nsp16:Q238H,ORF3a:S26L,M:I82T,ORF7b:H42,ORF8:DF119,N:M1,N:D63G,N:R203M,N:G215C","G210T,G4181T,C6402T,C8986T,G9053T,A11201G,A11332G,G18079T,C19220T,G21372T,C25469T,T26767C,C27881T,AGATTTC28247A,AAAA28271AAA,A28461G,G28881T,G28916T","ORF3a:S26L,N:G215C,N:D63G",,,,0.0,0.0,0.0,0.0
AY.4,Delta,"nsp3:A488S,nsp3:P1228L,nsp3:P1469S,nsp3:A1711V,nsp4:D144,nsp4:V167L,nsp6:T77A,nsp6:V120,nsp14:A394V,ORF3a:S26L,ORF7b:T40I,N:D63G,N:G215C","G4181T,C6402T,C7124T,C7851T,C8986T,G9053T,A11201G,A11332G,C19220T,C25469T,C27874T,A28461G,G28916T","ORF3a:S26L,N:G215C,N:D63G",,,https://opendata.ncats.nih.gov/variant/datasets?query=AY,260.98,538.28,50.68,106.28
AY.4.1,Delta,"nsp13:N268,nsp14:Y296","T17040C,T18927C",,,,,0.0,0.0,985.54,1751.27
AY.4.10,Delta,"3CLpro:L220,ORF3a:R122I","C10714T,G25757T",,,,,0.0,0.0,336.88,804.37
AY.4.11,Delta,"nsp3:A1711V,nsp3:S1717L,RdRp:N611","C7851T,C7869T,C15273T",,,,,0.0,0.0,254.28,597.14
AY.4.13,Delta,"RdRp:D454A,nsp15:P111S","A14801C,C19951T",RdRp:D454A,,,,0.0,0.0,231.9,467.61
AY.4.14,Delta,"nsp13:A446V,nsp15:K12N","C17573T,G19656T",,,,,0.0,0.0,1567.37,2294.83
AY.4.15,Delta,"nsp13:A446V,ORF3a:T269S,ORF8:L4F","C17573T,A26197T,C27893T,C27903T",ORF3a:T269S,,,,0.0,0.0,3060.89,2935.01
AY.4.2,Delta,"nsp13:N268,ORF3a:S74","T17040C,C25614T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=AY,101.45,235.48,70.75,154.48
AY.4.2.1,Delta,"nsp13:N268,nsp14:C216","T17040C,C18687T",,,,,0.0,0.0,69.14,150.84
AY.4.2.2,Delta,"nsp13:N268,S:V1264L","T17040C,G25352C",S:V1264L,,,,0.0,0.0,73.33,151.25
AY.4.2.3,Delta,"nsp3:A1711V,nsp13:N268,S:Y145H,M:A2S","C7851T,T17040C,T21995C,G26526T","M:A2S,S:Y145H",,,,0.0,0.0,75.19,163.31
AY.4.2.5,Delta,"3CLpro:F66,S:Q414K","C10252T,C22802A",,S:Q414K,,,0.0,0.0,28949.16,25710.67
AY.4.3,Delta,"nsp3:A1711V,S:P26S","C7851T,C21638T",S:P26S,,,,3826.2,4502.81,149.79,361.45
AY.4.4,Delta,"nsp3:A1711V,S:L5F,S:S929T","C7851T,C21575T,G24348C","S:S929T,S:L5F",,,,0.0,0.0,1111.35,1765.62
AY.4.5,Delta,"nsp3:A1711V,S:D1259Y","C7851T,G25337T",S:D1259Y,,,,0.0,0.0,296.21,727.14
AY.4.6,Delta,N:S232G,A28967G,N:S232G,,,,88.12,178.92,45.02,94.36
AY.4.7,Delta,"nsp13:E319D,E:V58F","G17193T,G26416T",nsp13:E319D,,,,502282.75,65024.01,831.95,2450.99
AY.4.8,Delta,"nsp6:Q160K,ORF3a:A33S","C11450A,G25489T",ORF3a:A33S,,,,0.0,0.0,364.71,885.42
AY.4.9,Delta,"nsp8:T141M,nsp13:N268","C12513T,T17040C",,,,,0.0,0.0,51.11,105.51
AY.41,Delta,"nsp3:A1739,RdRp:P227S","G7936T,C14119T",,,,,0.0,0.0,137.6,301.68
AY.42,Delta,"nsp7:D77,RdRp:H599","C12073T,C15237T",,,,,109.46,225.86,80.6,171.25
AY.42.1,Delta,"nsp3:S454R,nsp7:D77,S:T719I,S:L938F","T4081A,C12073T,C23718T,C24374T","S:L938F,S:T719I",,,,0.0,0.0,0.0,0.0
AY.43,Delta,RdRp:L838I,C15952A,,,,,63.03,133.56,47.06,96.22
AY.43.1,Delta,"nsp8:A191V,ORF3a:T14I","C12663T,C25433T",,,,,0.0,0.0,63.08,131.72
AY.43.2,Delta,"nsp3:G337C,RdRp:L838I,nsp14:Y235,S:N856,N:Q9L","G3728T,C15952A,C18744T,C24130T,A28299T",N:Q9L,,,,0.0,0.0,258.43,719.93
AY.43.4,Delta,"nsp3:P841L,RdRp:L838I,nsp14:Y235,S:N856,N:Q9L","C5241T,C15952A,C18744T,C24130T,A28299T",N:Q9L,,,,0.0,0.0,58.54,127.84
AY.43.5,Delta,"S:N1125,ORF8:A51V,N:R195I","C24937T,C28045T,G28857T",,,,,0.0,0.0,12224.66,21560.86
AY.43.6,Delta,"RdRp:L838I,ORF7a:F6L,N:V270L","C15952A,T27409C,G29081T",N:V270L,,,,0.0,0.0,2622.69,5689.75
AY.43.8,Delta,"RdRp:L838I,nsp13:E341D,nsp14:Y235","C15952A,G17259T,C18744T",,,,,0.0,0.0,63.25,133.51
AY.43.9,Delta,"nsp3:P1103S,RdRp:L838I,nsp14:Y235,E:S6,N:Q9L","C6026T,C15952A,C18744T,G26262A,A28299T","N:Q9L,nsp3:P1103S",,,,0.0,0.0,1377.98,2893.39
AY.44,Delta,RdRp:F192V,T14014G,,,,,51.83,108.72,60.19,126.54
AY.45,Delta,"nsp3:A488S,nsp4:D144,nsp4:V167L,nsp6:T77A,nsp6:V120,RdRp:M124I,nsp14:A394V,ORF3a:I7,ORF7b:T40I,N:G215C","G4181T,C8986T,G9053T,A11201G,A11332G,G13812T,C19220T,C25413T,C27874T,G28916T","RdRp:M124I,N:G215C",,,,739.31,1425.01,72.46,150.11
AY.46,Delta,"nsp6:A2V,nsp6:V120","C10977T,A11332G",,,,,74.4,165.33,53.49,110.9
AY.46.1,Delta,"nsp2:K278N,ORF3a:L94P","A1639C,T25673C",,,,,625.65,1114.56,0.0,0.0
AY.46.2,Delta,"nsp6:A2V,nsp13:V521","C10977T,A17799G",,,,,0.0,0.0,394.05,732.98
AY.46.3,Delta,"nsp6:A2V,RdRp:R249M,N:A35","C10977T,G14186T,G28378T",,,,,0.0,0.0,736.13,1553.65
AY.46.4,Delta,S:E661D,G23545T,S:E661D,,,,54.79,117.95,52.66,116.7
AY.46.5,Delta,RdRp:T710I,C15569T,,,,,47.07,99.4,39.94,82.25
AY.46.6,Delta,"nsp3:S1197,nsp6:A2V","C6310T,C10977T",,,,,667.57,1627.09,56.26,115.89
AY.47,Delta,"nsp3:E815D,nsp7:N69","G5164T,C12049T",,,,,158.58,350.41,1278.66,3439.84
AY.48,Delta,"nsp13:E420,ORF8:E19*","A17496G,G27948T",ORF8:E19*,,,,1164.42,2214.56,0.0,0.0
AY.49,Delta,"nsp3:Y1018,ORF8:Q29L","T5773C,A27979T",,,,,253.74,582.57,0.0,0.0
AY.5,Delta,"nsp6:V120,S:V1122","A11332G,G24928T",,,,,402.85,815.49,58.99,123.27
AY.5.2,Delta,"S:V1122,ORF3a:S60,N:S327L","G24928T,C25572T,C29253T",,,,,0.0,0.0,3849.82,20658.64
AY.5.3,Delta,"nsp3:T1590I,S:V1122,N:S327L","C7488T,G24928T,C29253T",,,,,2399.33,3343.0,0.0,0.0
AY.5.4,Delta,"nsp2:P129L,S:V1122,N:S327L","C1191T,G24928T,C29253T",,,,,0.0,0.0,661.45,1223.97
AY.5.5,Delta,"nsp3:A1374V,S:V1122,N:S327L","C6840T,G24928T,C29253T",,,,,0.0,0.0,2561.26,4085.22
AY.50,Delta,"nsp2:P129L,nsp3:P822L,nsp3:T1004I,nsp9:Y87,nsp14:G505,nsp15:L214","C1191T,C5184T,C5730T,T12946C,C19554T,A20262G",,,,,0.0,0.0,3524.4,18027.75
AY.51,Delta,"nsp8:V44,nsp9:Y87,nsp14:P46L","G12223T,T12946C,C18176T",,,,,0.0,0.0,513.01,922.32
AY.52,Delta,"nsp2:G154,nsp9:Y87,S:L1141W,ORF3a:A99","C1267T,T12946C,T24984G,T25689C",S:L1141W,,,,532.18,1124.22,0.0,0.0
AY.53,Delta,"nsp9:Y87,nsp15:A137","T12946C,C20031T",,,,,0.0,0.0,485.7,829.29
AY.54,Delta,"RdRp:R249,nsp14:S374F","G14187A,C19160T",,,,,174.85,388.1,0.0,0.0
AY.55,Delta,"nsp3:P822L,nsp4:A446V,nsp6:A2,nsp6:V149A,nsp6:T181I","C5184T,C9891T,A10978G,T11418C,C11514T",,,,,0.0,0.0,0.0,0.0
AY.56,Delta,"nsp3:N305,ORF7b:E39*","C3634T,G27870T",,,,,186.83,413.62,0.0,0.0
AY.57,Delta,"nsp2:P200S,nsp3:T955","C1403T,A5584T",,,,,0.0,0.0,214.54,554.33
AY.58,Delta,"nsp3:L825,nsp4:A446V,M:N203","C5192T,C9891T,C27131T",,,,,0.0,0.0,11821.06,18908.03
AY.59,Delta,"nsp3:T955,nsp14:D375,nsp15:R257","A5584G,C19164T,T20391G",,,,,0.0,0.0,0.0,0.0
AY.6,Delta,"nsp2:D511N,nsp13:E365D","G2336A,G17331T",nsp13:E365D,,,,0.0,0.0,65.17,140.4
AY.60,Delta,"nsp4:I27T,nsp13:A296S","T8634C,G17122T",,,,,0.0,0.0,2353.28,3749.58
AY.61,Delta,"nsp6:T181I,ORF3a:I47T","C11514T,T25532C",,,,,0.0,0.0,474.18,718.32
AY.62,Delta,"nsp2:A80,nsp15:V155","A1045T,A20085G",,,,,383.42,1057.95,0.0,0.0
AY.63,Delta,"nsp3:I1723V,ORF10:R20I","A7886G,G29616T",,,,,0.0,0.0,6535.82,8206.91
AY.64,Delta,"S:K1191N,ORF3a:G100V","G25135T,G25691T",S:K1191N,,,,529.99,813.97,0.0,0.0
AY.65,Delta,"RdRp:M196I,M:I161","G14028T,C27005T",,,,,1301.93,1421.49,76.4,161.63
AY.66,Delta,"nsp3:L1259,N:P207S","T6496C,C28892T",N:P207S,,,,0.0,0.0,70.95,143.7
AY.67,Delta,"nsp3:T724I,ORF6:Q56R","C4890T,A27368G",,,,,1040.94,2012.53,0.0,0.0
AY.68,Delta,"nsp3:P192L,RdRp:L308","C3294T,C14362T",,,,,0.0,0.0,1026.37,3245.25
AY.69,Delta,"nsp4:V293I,nsp13:V210I,ORF7a:L56","G9431A,G16864A,C27559T",,,,,0.0,0.0,0.0,0.0
AY.7,Delta,"nsp3:L75,nsp6:V131","G2944A,G11365T",,,,,0.0,0.0,795.36,1583.08
AY.7.1,Delta,"nsp6:V131,nsp14:R212","G11365T,A18675G",,,,,0.0,0.0,145.89,329.54
AY.7.2,Delta,"nsp3:L75,ORF3a:G18V","G2944A,G25445T",ORF3a:G18V,,,,0.0,0.0,1141.9,3348.52
AY.70,Delta,"nsp3:T724,nsp16:A199,N:M210I","C4891T,G21255T,G28903T",N:M210I,,,,0.0,0.0,498.51,1408.73
AY.71,Delta,"nsp2:P568,nsp6:V149A,S:S1252F","C2509T,T11418C,C25317T",S:S1252F,,,,0.0,0.0,441.44,1274.24
AY.72,Delta,"nsp3:Q940,nsp3:D1121Y,ORF3a:D155G","G5539A,G6080T,A25856G",,,,,0.0,0.0,686.94,1789.5
AY.73,Delta,"nsp3:Q940,N:P207L","G5539A,C28893T",N:P207L,,,,0.0,0.0,2218.81,2906.81
AY.74,Delta,"nsp3:L425,nsp3:Q940,ORF3a:I7,N:K373N","G3994A,G5539A,C25413T,G29392T",N:K373N,,,,603.23,891.48,0.0,0.0
AY.75,Delta,"nsp3:P822L,nsp3:T955,nsp3:P1558,nsp4:A446V,nsp6:V149A,nsp6:T181I,nsp9:L112,M:S197N","C5184T,A5584G,G7393T,C9891T,T11418C,C11514T,C13019T,G27112A",M:S197N,,,,60.63,131.0,761.76,1370.31
AY.75.2,Delta,"nsp3:T1666,S:R683","T7717C,G23611T",,,,,0.0,0.0,0.0,0.0
AY.76,Delta,"nsp3:L1505S,nsp13:Y180C","T7233C,A16775G",nsp3:L1505S,,,,0.0,0.0,0.0,0.0
AY.77,Delta,"3CLpro:P108S,ORF6:Y49H","C10376T,T27346C",3CLpro:P108S,,,,586.73,1172.28,0.0,0.0
AY.78,Delta,"N:P309,N:S318","C29200T,G29227A",,,,,0.0,0.0,6984.63,6825.73
AY.8,Delta,RdRp:I244V,A14170G,,,,,34.85,75.14,89.53,191.53
AY.80,Delta,"nsp3:V766,nsp14:L383","G5017A,C19186T",,,,,0.0,0.0,332.42,542.28
AY.81,Delta,"S:D1260Y,ORF8:I47V","G25340T,A28032G",S:D1260Y,,,,565.8,1578.23,0.0,0.0
AY.83,Delta,"nsp3:T942I,ORF3a:A33","C5544T,A25491T",,,,,275.53,689.54,0.0,0.0
AY.85,Delta,"nsp2:A340,nsp13:V226,E:V62F","C1825T,G16914T,G26428T",,,,,0.0,0.0,294.94,585.78
AY.86,Delta,"RdRp:S647I,S:A845S,N:T391I","G15380T,G24095T,C29445T","S:A845S,N:T391I",,,,0.0,0.0,0.0,0.0
AY.87,Delta,"nsp8:T187I,nsp13:T307I","C12651T,C17156T",nsp13:T307I,,,,0.0,0.0,1180.11,4222.03
AY.88,Delta,"nsp6:V120,nsp16:M17I,N:P151S","A11332G,G20709T,C28724T",N:P151S,,,,2663.94,3709.85,363.15,788.29
AY.9,Delta,"nsp4:A446V,S:I410","C9891T,C22792T",,,,,123.29,300.35,81.4,172.76
AY.9.2,Delta,"nsp2:V308,RdRp:R197Q","G1729A,G14030A",,,,,121.36,295.09,74.52,157.76
AY.9.2.2,Delta,"nsp2:V308,nsp4:I377M","G1729A,A9685G",,,,,0.0,0.0,1253.85,1954.28
AY.90,Delta,"ORF8:V33F,N:N154","G27990T,T28735C",,,,,0.0,0.0,482.4,953.39
AY.91,Delta,"nsp2:F356L,ORF3a:I7,ORF8:R115C","T1871C,C25413T,C28236T",,,,,0.0,0.0,149.09,297.71
AY.91.1,Delta,"nsp13:I258,ORF8:R115C,N:P13S","C17010T,C28236T,C28310T",N:P13S,,,,0.0,0.0,2249.63,3027.05
AY.92,Delta,"N:D128,N:Y298","C28657T,C29167T",,,,,0.0,0.0,42.22,91.23
AY.94,Delta,"nsp1:Q66,RdRp:Y828","G463A,C15924T",,,,,0.0,0.0,1027.0,1997.02
AY.95,Delta,"S:L244S,S:K854","T22293C,G24124A",S:L244S,,,,0.0,0.0,65.46,131.6
AY.98,Delta,"nsp1:E87D,nsp6:V120","G526T,A11332G",,,,,394.16,770.8,70.7,143.3
AY.98.1,Delta,"nsp1:E87D,nsp3:E906D","G526T,G5437T",nsp3:E906D,,,,874.7,1470.35,70.52,143.07
AY.98.1.1,Delta,"nsp1:V35,nsp1:E87D,nsp3:E906D","G370T,G526T,G5437T",nsp3:E906D,,,,0.0,0.0,1028.82,2286.86
AY.99,Delta,"nsp3:I273V,GFL:D64","A3536G,T13216C",,,,,197.06,434.22,150.59,308.75
AY.99.1,Delta,"nsp3:I273V,nsp4:T147I","A3536G,C8994T",,,,,0.0,0.0,856.74,1815.89
AY.99.2,Delta,nsp3:K973,A5638G,,,,,74.2,173.96,44.13,94.68
AZ.2,,"3CLpro:R105,nsp16:A116S,S:D796H","C10369T,G21004T,G23948C",S:D796H,,,,0.0,0.0,1222.54,2913.69
AZ.2.1,,"nsp3:D135N,S:A575,N:AR208G","G3122A,T23287C,GCTA28895G",,,,,0.0,0.0,915.22,2126.29
AZ.3,,"nsp3:E378V,nsp7:M3T","A3852T,T11850C",,,,,4142.12,4779.99,0.0,0.0
AZ.4,,"nsp2:Y537,ORF7b:*44,N:AR208G","C2416T,AAACGAACATGAAATT27886A,GCTA28895G",,,,,239.07,489.91,179.99,376.61
AZ.5,,"nsp4:T378,nsp16:I112","A9688C,T20994C",,,,,0.0,0.0,0.0,0.0
B.1.1.111,,"ORF7a:Y18,ORF10:F35S","T27447C,T29661C",,,,,,,,
B.1.1.113,,"nsp1:L16,nsp6:M126V","C313T,A11348G",,,,,,,,
B.1.1.114,,"nsp1:L16,M:M109I","C313T,G26849T",,,,,,,,
B.1.1.116,,"nsp14:S255I,S:A348","G18803T,A22606G",,,,,,,,
B.1.1.123,,"nsp3:L1546,S:G769V","T7357C,G23868T",S:G769V,,,,,,,
B.1.1.125,,"ORF6:T21,N:R203","T27264G,G28882A",,,,,,,,
B.1.1.128,,"nsp3:F1354,nsp7:S25L,nsp14:C382","C6781T,C11916T,C19185T",,,,,,,,
B.1.1.130,,"nsp3:A256V,nsp4:D217","C3486T,T9205C",,,,,,,,
B.1.1.132,,"nsp16:A199,N:R203,N:Q229H","G21255C,G28882A,G28960T",N:Q229H,,,,,,,
B.1.1.133,,"RdRp:E857,nsp16:G185","A16011G,A21213G",,,,,,,,
B.1.1.136,,"M:H154,ORF8:R101","C26984T,T28196C",,,,,,,,
B.1.1.138,,"GFL:L75,RdRp:D499","C13247T,C14937T",,,,,,,,
B.1.1.139,,"nsp1:L16,ORF7a:P84","C313T,T27645A",,,,,,,,
B.1.1.14,,"nsp2:S99F,ORF3a:K136E","C1101T,A25798G",,,,,,,,
B.1.1.141,,"S:M153T,ORF3a:D222Y,N:R203","T22020C,G26056T,G28882A",S:M153T,,,,,,,
B.1.1.144,,"nsp3:D599N,nsp15:I222","G4514A,T20286C",,,,,,,,
B.1.1.145,,"nsp3:L151F,nsp3:S1206L,ORF7a:Q94*","C3170T,C6336T,C27673T",,,,,,,,
B.1.1.147,,"nsp3:K999,3CLpro:I78V","G5716A,A10286G",3CLpro:I78V,,,,,,,
B.1.1.149,,"nsp2:A357S,S:R21I,ORF8:S67F","G1874T,G21624T,C28093T","ORF8:S67F,S:R21I",,,,,,,
B.1.1.15,,nsp3:P968S,"C5621T,G29755A",,,,,,,,
B.1.1.153,,"RdRp:Y149,nsp13:S74P","C13887T,T16456C",nsp13:S74P,,,,,,,
B.1.1.154,,"RdRp:Y887,nsp14:T193A","C16101T,A18616G",,,,,,,,
B.1.1.159,,"nsp4:T189I,nsp4:D217A","C9120T,A9204C",,,,,,,,
B.1.1.16,,"S:T73I,S:A892S","C21780T,G24236T",S:T73I,,,,,,,
B.1.1.162,,"nsp1:L16,nsp3:H295Y,RdRp:L891","C313T,C3602T,C16111T",,,,,,,,
B.1.1.163,,"nsp6:L19,nsp9:T67","G11029A,A12886G",,,,,,,,
B.1.1.165,,ORF8:V13,"A27932G,G29705T",,,,,,,,
B.1.1.17,,"S:A831V,ORF3a:Y189C,M:T175M","C24054T,A25958G,C27046T","S:A831V,M:T175M,ORF3a:Y189C",,,,,,,
B.1.1.170,,"nsp3:P822H,nsp14:C216","C5184A,C18687T",,,,,,,,
B.1.1.171,,"nsp1:E57G,nsp2:S211F","A435G,C1437T,G29745T",,,,,,,,
B.1.1.176,,"nsp4:P371,nsp6:LSG105C","T9667C,TTGTCTG11285T",,,,,,,,
B.1.1.177,,"GFL:H48,RdRp:T908I,nsp13:D580","C13168T,C16163T,C17976T",,,,,,,,
B.1.1.178,,"nsp3:V477A,ORF3a:W69C","T4149C,G25599T",,,,,,,,
B.1.1.181,,"S:M900I,ORF7a:V104F","G24262T,G27703T",,,,,,,,
B.1.1.186,,"nsp3:A465V,S:D138H,S:F543","C4113T,G21974C,C23191T",S:D138H,,,,,,,
B.1.1.187,,"3CLpro:Q69R,3CLpro:M276V","A10260G,A10880G",,,,,,,,
B.1.1.190,,"RdRp:A449V,N:D144N","C14786T,G28703A","N:D144N,RdRp:A449V",,,,,,,
B.1.1.196,,"nsp3:V597,nsp6:D112","G4510T,C11308T",,,,,,,,
B.1.1.198,,"nsp3:T181I,RdRp:V848","C3261T,A15984T",,,,,,,,
B.1.1.203,,"S:N764,ORF3a:E194K","C23854T,G25972A",ORF3a:E194K,,,,,,,
B.1.1.204,,"nsp3:I385T,nsp3:N1785D","T3873C,A8072G",,,,,,,,
B.1.1.205,,"nsp3:Q940,nsp16:M270I","G5539A,G21468A",,,,,,,,
B.1.1.207,,"3CLpro:R298,M:V70F,M:E135","A10948G,G26730T,A26927G",,,,,,,,
B.1.1.213,,"nsp1:L16,M:G202,N:R203","C313T,C27128T,G28882A",,,,,,,,
B.1.1.214,,"nsp1:L16,nsp14:P43L,N:M234I","C313T,C18167T,G28975T",N:M234I,,,,,,,
B.1.1.217,,"nsp3:G1164,nsp14:V483","A6211G,C19488T",,,,,,,,
B.1.1.218,,"N:T76I,N:S327","C28500T,G29254A",,,,,,,,
B.1.1.219,,"nsp3:Q1216L,nsp4:C296G","A6366T,T9440G",,,,,,,,
B.1.1.225,,"nsp2:R4C,nsp3:A231V,ORF3a:L15F","C815T,C3411T,G25437T",,,,,,,,
B.1.1.226,,"nsp1:L16,RdRp:P412,ORF3a:L85F","C313T,C14676T,G25647T",,,,,,,,
B.1.1.227,,"RdRp:A840,nsp13:V169F,E:L74","C15960T,G16741T,C26464T",,,,,,,,
B.1.1.228,,"nsp15:E223G,S:D53,N:P122H","A20288G,C21721T,C28638A",N:P122H,,,,,,,
B.1.1.229,,"nsp3:I414V,nsp9:A28","A3959G,G12769T",,,,,,,,
B.1.1.231,,ORF3a:Q38P,A25505C,,,,,,,,
B.1.1.232,,"nsp8:V34F,nsp13:F81","G12191T,T16479C",,,,,,,,
B.1.1.234,,"nsp3:E869D,S:S691A","G5326T,T23633G","S:S691A,nsp3:E869D",,,,,,,
B.1.1.236,,"RdRp:H572,M:A2V","T15156C,C26527T",M:A2V,,,,,,,
B.1.1.237,,"nsp3:D110,S:R21I,ORF7b:C41F","T3049C,G21624T,G27877T",S:R21I,,,,,,,
B.1.1.239,,"nsp6:F216,nsp13:C50,S:L5F,S:L276","C11620T,C16386T,C21575T,C22388T",S:L5F,,,,,,,
B.1.1.240,,"S:K1073N,N:S416","G24781T,A29521T",S:K1073N,,,,,,,
B.1.1.241,,"nsp6:K270,ORF3a:D27","A11782G,T25473C",,,,,,,,
B.1.1.243,,"nsp3:P874S,nsp9:A16","C5339T,C12733A",nsp3:P874S,,,,,,,
B.1.1.249,,"S:P251L,S:A1078","C22314T,T24796C",S:P251L,,,,,,,
B.1.1.251,,"nsp6:V26,S:V407,S:I1114","C11050T,C22783T,C24904T",,,,,,,,
B.1.1.255,,"nsp2:S591C,nsp3:T819I,nsp3:P1228S","A2576T,C5175T,C6401T",,,,,,,,
B.1.1.256,,"nsp2:E612,nsp3:G301","A2641G,C3622T",,,,,,,,
B.1.1.257,,"nsp15:A137,M:T175M","C20031A,C27046T",M:T175M,,,,,,,
B.1.1.258,,"nsp6:A54,ORF3a:A143T","T11134C,G25819A",,,,,,,,
B.1.1.26,,"nsp13:V193I,N:R203K,N:R203,N:G204R","C241T,G16813A,G28881A,G28882A,G28883C",,,,,,,,
B.1.1.262,,"nsp2:F498,nsp3:SNSF1204F","C2299T,TCAAATTCGT6329T",,,,,,,,
B.1.1.263,,"nsp3:V1069I,S:S71","G5924A,T21775G",,,,,,,,
B.1.1.265,,"nsp6:H11Q,N:P117,N:G204R","C11005A,A28624T,G28883C",,,,,,,,
B.1.1.266,,"nsp3:K945N,S:N824,N:T16","G5554T,C24034T,G28321T",,,,,,,,
B.1.1.268,,"nsp2:I605V,RdRp:V700,nsp15:T285I","A2618G,C15540T,C20474T",,,,,,,,
B.1.1.269,,"nsp3:T779I,nsp7:M3I","C5055T,G11851T",,,,,,,,
B.1.1.270,,"nsp2:Q275H,ORF7a:L96F","A1630C,C27679T",,,,,,,,
B.1.1.272,,"nsp3:E113K,nsp14:F350","G3056A,C19089T",,,,,,,,
B.1.1.277,,"nsp3:V50,N:F274","A2869G,C29095T",,,,,,,,
B.1.1.279,,"nsp14:A274S,S:R21I","G18859T,G21624T",S:R21I,,,,,,,
B.1.1.280,,"nsp2:R246,nsp3:L550","T1543A,T4369C",,,,,,,,
B.1.1.284,,"nsp3:S543P,N:P151L","T4346C,C28725T",N:P151L,,,,,,,
B.1.1.286,,"nsp3:V202F,nsp14:R212K","G3323T,G18674A",,,,,,,,
B.1.1.289,,"nsp6:G277S,ORF3a:A54S","G11801A,G25552T",,,,,,,,
B.1.1.29,,"nsp2:A476V,nsp14:C382,N:S37P","C2232T,C19185T,T28382C",N:S37P,,,,,,,
B.1.1.290,,"nsp2:T85,nsp15:N73,ORF8:I121","C1060T,T19839C,C28256T",,,,,,,,
B.1.1.291,,"RdRp:Y831,nsp15:N73","C15933T,T19839C",,,,,,,,
B.1.1.294,,"nsp3:D218E,nsp3:V1388,S:L54","C3373A,C6883T,G21724A",,,,,,,,
B.1.1.296,,"nsp2:K219R,S:L922","A1461G,G24328A",,,,,,,,
B.1.1.297,,"nsp16:Q28H,ORF8:I10T","A20742C,T27922C",,,,,,,,
B.1.1.298,,"RdRp:T739I,S:Y453F,ORF3a:H182Y","C15656T,A22920T,C25936T",ORF3a:H182Y,S:Y453F,,,,,,
B.1.1.299,,"3CLpro:G71S,S:T549A","G10265A,A23207G","3CLpro:G71S,S:T549A",,,,,,,
B.1.1.3,,"3CLpro:A70T,nsp15:N73","G10262A,T19839C",3CLpro:A70T,,,,,,,
B.1.1.300,,"3CLpro:G71S,RdRp:R118","G10265A,T13794G",3CLpro:G71S,,,,,,,
B.1.1.301,,"nsp4:V293,3CLpro:G71S,nsp15:V10","A9433T,G10265A,A19650G",3CLpro:G71S,,,,,,,
B.1.1.302,,"S:V1122L,N:A359","G24926T,A29350G",S:V1122L,,,,,,,
B.1.1.303,,"nsp13:T599I,nsp14:Q22H","C18032T,G18105T",,,,,,,,
B.1.1.305,,"nsp1:L16,N:R41","C313T,G28396A",,,,,,,,
B.1.1.307,,"nsp2:M135I,nsp7:M75I","G1210T,G12067T",,,,,,,,
B.1.1.308,,"nsp2:G262V,ORF3a:K75N","G1590T,G25617T",,,,,,,,
B.1.1.309,,"nsp2:F10,ORF3a:K75N","C835T,G25617T",,,,,,,,
B.1.1.310,,"nsp3:E1394G,ORF3a:K75N","A6900G,G25617T",,,,,,,,
B.1.1.311,,"nsp6:M86I,ORF3a:K75N","G11230T,G25617T",,,,,,,,
B.1.1.312,,"nsp14:P327S,S:Q957L","C19018T,A24432T",S:Q957L,,,,,,,
B.1.1.316,,"S:F65,S:Q677H,S:T732S","C21757T,G23593C,A23756T","S:Q677H,S:T732S",,,,,,,
B.1.1.317,,"nsp15:N73,N:A211V","T19839C,C28905T",N:A211V,,,,,,,
B.1.1.318,,"S:A575,S:T1238","T23287C,C25276A",,,,,926.15,2425.47,696.53,1291.37
B.1.1.320,,"nsp2:P191L,3CLpro:P108S,ORF3a:T175I","C1377T,C10376T,C25916T","3CLpro:P108S,ORF3a:T175I",,,,,,,
B.1.1.322,,"nsp3:N855,nsp15:N73,S:T732A,N:L291","C5284T,T19839C,A23756G,C29144T",S:T732A,,,,,,,
B.1.1.323,,"M:T175M,N:T24N","C27046T,C28344A","N:T24N,M:T175M",,,,,,,
B.1.1.326,,"nsp3:E545,nsp3:S1285F,RdRp:V905I,ORF3a:L46F,N:R203","G4354A,C6573T,G16153A,C25528T,G28882A",,,,,,,,
B.1.1.328,,"nsp3:A1502T,ORF3a:G224V","G7223A,G26063T",nsp3:A1502T,,,,,,,
B.1.1.329,,"nsp2:K443Q,3CLpro:K102","A2132C,G10360A",,,,,,,,
B.1.1.337,,"nsp3:S702F,nsp7:L40I","C4824T,C11960A",nsp7:L40I,,,,,,,
B.1.1.339,,"nsp3:A1711V,S:I870V,N:R203","C7851T,A24170G,G28882A",S:I870V,,,,,,,
B.1.1.341,,"nsp2:N168,nsp3:L616I,nsp3:N1805","T1309C,C4565A,T8134C",,,,,,,,
B.1.1.344,,"nsp4:L206,nsp13:P238","T9172C,T16950C",,,,,,,,
B.1.1.347,,"nsp3:S1375F,nsp3:Y1427","C6843T,C7000T",nsp3:S1375F,,,,,,,
B.1.1.348,,"ORF3a:F43,ORF3a:G174D","C25521T,G25913A",ORF3a:G174D,,,,,,,
B.1.1.349,,"S:D839Y,E:E8D","G24077T,G26268T","S:D839Y,E:E8D",,,,,,,
B.1.1.351,,"nsp4:K399E,RdRp:K143Q,nsp13:T141I","A9749G,A13867C,C16658T",nsp13:T141I,,,,,,,
B.1.1.352,,"nsp14:F326,nsp15:N73,ORF10:Q29*","C19017T,T19839C,C29642T",,,,,,,,
B.1.1.354,,"nsp4:F121,nsp4:D279N,N:R209I","C8917T,G9389A,G28899T",N:R209I,,,,,,,
B.1.1.356,,"nsp14:D324,nsp16:D133,ORF3a:S253","C19011T,C21057T,C26151T",,,,,,,,
B.1.1.358,,"nsp3:H795Y,nsp8:L98","C5102T,G12385A",,,,,,,,
B.1.1.359,,"nsp2:V447,N:N11S","C2146T,A28305G",N:N11S,,,,,,,
B.1.1.360,,"S:R21I,ORF3a:W69L","G21624T,G25598T",S:R21I,,,,,,,
B.1.1.361,,"nsp3:N1369S,nsp15:F302","A6825G,T20526C",,,,,,,,
B.1.1.362,,"nsp2:N524H,nsp13:Y217,S:V772","A2375C,C16887T,T23878C",,,,,,,,
B.1.1.363,,"nsp3:Y916H,S:R21I,S:R847K","T5465C,G21624T,G24102A","S:R847K,S:R21I,nsp3:Y916H",,,,,,,
B.1.1.365,,"nsp3:D736A,S:R21I","A4926C,G21624T","S:R21I,nsp3:D736A",,,,,,,
B.1.1.368,,"nsp4:S481L,ORF7b:A15S","C9996T,G27798T",,,,,,,,
B.1.1.369,,"S:T723,N:D103Y","C23731T,G28580T",N:D103Y,,,,,,,
B.1.1.37,,ORF8:E92,A28169G,,,,,,,,
B.1.1.371,,"RdRp:T141I,RdRp:P227L,nsp13:S74P","C13862T,C14120T,T16456C",nsp13:S74P,,,,,,,
B.1.1.374,,"nsp1:L27I,nsp2:L217,S:L452Q","C344A,T1456C,T22917A",,S:L452Q,,,,,,
B.1.1.376,,"nsp3:S1333G,nsp6:Q208H","A6716G,G11596T",,,,,,,,
B.1.1.379,,"nsp13:P419S,S:R21I,N:R203","C17491T,G21624T,G28882A",S:R21I,,,,,,,
B.1.1.380,,"nsp3:D1214G,S:I980","A6360G,C24502A",,,,,,,,
B.1.1.382,,"nsp3:G1217R,nsp13:G206V","G6368A,G16853T",nsp13:G206V,,,,,,,
B.1.1.383,,"nsp2:H194,nsp14:P142L","C1387T,C18464T",,,,,,,,
B.1.1.384,,"S:P479S,S:K854N","C22997T,G24124T",S:K854N,S:P479S,,,,,,
B.1.1.39,,"nsp4:V192,N:V72I","G9130T,G28487A",N:V72I,,,,,,,
B.1.1.392,,"nsp3:V1331F,3CLpro:P108S,nsp13:P504L","G6710T,C10376T,C17747T","3CLpro:P108S,nsp13:P504L",,,,,,,
B.1.1.395,,"nsp3:E45,nsp3:K999N","A2854G,G5716T",,,,,,,,
B.1.1.4,,"nsp8:I107V,nsp16:S145","A12410G,T21093C",,,,,,,,
B.1.1.40,,"nsp3:L364,RdRp:T319I,N:R203","C3811T,C14396T,G28882A",,,,,,,,
B.1.1.403,,"3CLpro:V18A,nsp7:A42V","T10107C,C11967T",,,,,,,,
B.1.1.404,,"nsp15:D310Y,M:S4","G20548T,C26534T",,,,,,,,
B.1.1.406,,S:G1251V,"G25314T,G29744A",S:G1251V,,,,,,,
B.1.1.408,,"nsp3:T526,nsp3:E681","A4297G,A4762G",,,,,,,,
B.1.1.41,,"nsp3:T1198K,3CLpro:R298,RdRp:P323L,S:D614G,N:R203K,N:R203,N:G204R","C241T,C6312A,A10948G,C14408T,A23403G,G28881A,G28882A,G28883C",S:D614G,,,,,,,
B.1.1.413,,"RdRp:G137C,M:I73M","G13849T,A26741G",RdRp:G137C,,,,,,,
B.1.1.416,,"nsp13:C50,nsp16:T35I","C16386T,C20762T",,,,,,,,
B.1.1.418,,"nsp2:A336V,nsp15:N73,S:V951","C1812T,T19839C,G24415T",,,,,,,,
B.1.1.420,,"nsp6:Q160R,nsp14:T31","A11451G,T18132C",,,,,,,,
B.1.1.423,,"nsp8:L95F,S:H1101Y","C12374T,C24863T",S:H1101Y,,,,,,,
B.1.1.426,,"nsp13:V34I,nsp14:D172","G16336A,C18555T",,,,,,,,
B.1.1.428,,"nsp2:G212,nsp3:D1085,S:V70","C1441T,C5974T,C21772T",,,,,,,,
B.1.1.429,,"nsp2:T547I,3CLpro:A94V","C2445T,C10335T",3CLpro:A94V,,,,,,,
B.1.1.432,,"nsp3:L1422,nsp4:F255,nsp8:I107,RdRp:D291","A6985T,C9319T,C12412T,T14313C",,,,,,,,
B.1.1.433,,"nsp3:T763M,RdRp:A558","C5007T,T15114C",nsp3:T763M,,,,,,,
B.1.1.434,,"nsp3:Q180H,nsp13:A296S","G3259T,G17122T",,,,,,,,
B.1.1.437,,"nsp4:Y451,nsp8:A1","C9907T,T12094C",,,,,,,,
B.1.1.44,,"nsp3:L862,N:G204V","G5305A,G28884T",,,,,,,,
B.1.1.441,,"nsp1:K120N,N:A182S","G625T,G28817T",,,,,,,,
B.1.1.445,,"nsp3:I310V,S:Q613","A3647G,G23401A",,,,,,,,
B.1.1.450,,"nsp13:L384,M:D160","G17388A,C27002T",,,,,,,,
B.1.1.453,,"nsp8:P116,N:G212C","C12439T,G28907T",N:G212C,,,,,,,
B.1.1.459,,"nsp13:H245,nsp15:N73","C16971T,T19839C",,,,,,,,
B.1.1.46,,"nsp2:S138L,nsp4:F121,M:Y196,ORF6:D61,N:R203","C1218T,C8917T,C27110T,T27384C,G28882A",,,,,,,,
B.1.1.461,,"nsp1:G59S,S:A879S","G440A,G24197T",,,,,,,,
B.1.1.464,,"nsp7:S61,S:P715","C12025T,C23707T",,,,,,,,
B.1.1.467,,"nsp3:D218E,ORF3a:Y109C","C3373A,A25718G",,,,,,,,
B.1.1.47,,"nsp4:N244,nsp15:T48I","C9286T,C19763T",,,,,,,,
B.1.1.48,,"nsp1:L16,M:V70I,N:R203","C313T,G26730A,G28882A",,,,,,,,
B.1.1.482,,"nsp1:L16,M:H125Y,N:R203","C313T,C26895T,G28882A",,,,,,,,
B.1.1.486,,"ORF6:I14T,N:L353","T27242C,G29332T",ORF6:I14T,,,,,,,
B.1.1.487,,"nsp15:I252V,S:T22I","A20374G,C21627T",S:T22I,,,,,,,
B.1.1.49,,"S:R355,N:A119S","G22627A,G28628T",N:A119S,,,,,,,
B.1.1.5,,"nsp6:V289,nsp15:N73","A11839G,T19839C",,,,,,,,
B.1.1.50,,"nsp3:V597,RdRp:M666I,ORF3a:W131C","G4510A,G15438T,G25785T",,,,,,,,
B.1.1.500,,"S:N709,ORF7a:S37","T23689C,T27504C",,,,,,,,
B.1.1.507,,"nsp2:L79,nsp8:A54","G1042A,C12253T",,,,,,,,
B.1.1.51,,"nsp1:L16,3CLpro:N133,nsp6:L75F","C313T,T10453C,C11195T",,,,,,,,
B.1.1.512,,"3CLpro:G71S,S:I1232F","G10265A,A25256T",3CLpro:G71S,,,,,,,
B.1.1.514,,"3CLpro:G71S,RdRp:V330","G10265A,G14430T",3CLpro:G71S,,,,,,,
B.1.1.517,,"nsp14:L117,S:C590","C18388T,T23332C",,,,,,,,
B.1.1.518,,"nsp13:L163,nsp15:N73","A16725G,T19839C",,,,,,,,
B.1.1.519,,"nsp3:P141S,N:A308","C3140T,C29197T",,,,,,,,
B.1.1.521,,"nsp14:Y235,nsp15:N73,S:V620","C18744T,T19839C,C23422T",,,,,,,,
B.1.1.523,,"nsp2:V94,nsp2:V502","A1087G,A2311G",,,,,,,,
B.1.1.525,,"nsp3:V253,nsp3:N1860","T3478G,C8299T",,,,,,,,
B.1.1.528,,"nsp2:E89,nsp3:Q383H","A1072G,A3868T",,,,,,,,
B.1.1.55,,"nsp2:E574A,3CLpro:A129V,S:S1252P","A2526C,C10440T,T25316C",S:S1252P,,,,,,,
B.1.1.58,,"nsp15:P205S,S:L216","C20233T,C22210T",,,,,,,,
B.1.1.63,,"nsp15:A231V,S:S12F,N:L291","C20312T,C21597T,C29144T",S:S12F,,,,,,,
B.1.1.67,,"nsp6:D159N,S:T29I","G11447A,C21648T",S:T29I,,,,,,,
B.1.1.7,Alpha,"RdRp:T912,S:A570D","T16176C,C23271A",S:A570D,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.1.7,82.66,177.69,76.66,160.33
B.1.1.70,,"RdRp:V844,nsp15:T33I","A15972G,C19718T",,,,,,,,
B.1.1.71,,nsp6:T222,"T11638C,C29708T",,,,,,,,
B.1.1.72,,"nsp3:V1897I,E:F26L","G8408A,T26320C",,,,,,,,
B.1.1.74,,"nsp3:E1801Q,nsp15:N73,ORF8:E64*","G8120C,T19839C,G28083T",ORF8:E64*,,,,,,,
B.1.1.77,,"nsp15:N73,ORF8:D34N,ORF8:E106*","T19839C,G27993A,G28209T",,,,,,,,
B.1.1.86,,"nsp4:L417M,ORF7b:F19S","C9803A,T27811C",,,,,,,,
B.1.1.93,,"3CLpro:A191V,nsp6:Q257H,ORF3a:L46F","C10626T,G11743T,C25528T",3CLpro:A191V,,,,,,,
B.1.1.97,,"nsp1:E102K,nsp13:V570L,nsp14:V236","G569A,G17944T,C18747T",nsp13:V570L,,,,,,,
B.1.1.98,,"nsp3:E1213K,nsp16:P134S","G6356A,C21058T",,,,,,,,
B.1.104,,"RdRp:A97V,ORF3a:V13L","C13730T,G25429T",,,,,,,,
B.1.106,,"nsp3:D457,nsp3:P1787S","C4090T,C8078T",,,,,,,,
B.1.108,,"nsp1:Y118,nsp2:T85I,RdRp:N491S","C619T,C1059T,A14912G",,,,,,,,
B.1.110.3,,"nsp1:G112,nsp3:N1890","C601T,C8389T",,,,,,,,
B.1.112,,nsp3:S1265R,A6512C,,,,,,,,
B.1.115,,"S:N196,S:A706S","T22150C,G23678T",S:A706S,,,,,,,
B.1.116,,"nsp2:T85I,nsp3:P340S,N:S194L","C1059T,C3737T,C28854T",,,,,,,,
B.1.117,,nsp2:T388I,"C1968T,G29705T",,,,,,,,
B.1.12,,"nsp2:T85I,nsp3:A534V,ORF3a:A99V","C1059T,C4320T,C25688T",,,,,,,,
B.1.120,,"nsp2:N8,ORF7a:A8T,N:S33I","C829T,G27415A,G28371T",N:S33I,,,,,,,
B.1.124,,"nsp2:E452,nsp13:P47L","A2161G,C16376T",,,,,,,,
B.1.126,,"nsp3:L98,N:S194A","T3011C,T28853G",,,,,,,,
B.1.128,,"nsp3:T1858,nsp14:I150T,S:G1059","C241T,C8293T,T18488C,T24739C",,,,,,,,
B.1.13,,"nsp2:Y537,nsp15:V320L,ORF3a:Q57H","C2416T,G20578T,G25563T",,,,,,,,
B.1.131,,"nsp2:N269D,GFL:A104V,N:T205I","A1610G,C13335T,C28887T",,,,,,,,
B.1.139,,"nsp1:D144A,nsp3:K384N,nsp3:V404,nsp3:P503S,N:S235F","A696C,G3871T,T3931C,C4226T,C28977T",N:S235F,,,,,,,
B.1.145,,"nsp3:S716I,RdRp:L329I","G4866T,C14425A",,,,,,,,
B.1.146,,"3CLpro:A260V,RdRp:N628,N:V158","C10833T,C15324T,G28747T",,,,,,,,
B.1.147,,"RdRp:P323L,RdRp:N628,ORF3a:T14I","C14408T,C15324T,C25433T",,,,,,,,
B.1.149,,"nsp1:R119,nsp3:R646,nsp6:P262,nsp7:D67,nsp13:D204Y","C622T,G4657T,C11758T,C12043T,G16846T,C28269T",,,,,,,,
B.1.151,,"RdRp:N628,nsp14:R289C","C15324T,C18904T",,,,,,,,
B.1.157,,"nsp13:L297P,nsp15:L216","C241T,T17126C,A20268G",nsp13:L297P,,,,,,,
B.1.159,,"nsp2:Y537,nsp3:Q1884H,S:S691","C2416T,G8371T,C23635T",,,,,,,,
B.1.160.10,,"RdRp:V776L,nsp13:T588I","G15766T,C17999T",nsp13:T588I,,,,,,,
B.1.160.11,,"nsp3:T608,nsp4:Y46,nsp4:M324I,nsp6:Y175,RdRp:A185S,RdRp:V776L,nsp13:K218R,nsp13:E261D,M:I118,N:M234I","C4543T,C8692T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,T26876C,G28975C","N:M234I,nsp13:E261D",,,,,,,
B.1.160.12,,"RdRp:A185S,RdRp:A399,M:I118,ORF7a:T14I","G13993T,T14637A,T26876C,C27434T",,,,,,,,
B.1.160.15,,"nsp4:F369,ORF3a:L65,M:N203","C9661T,C25587T,C27131T",,,,,,,,
B.1.160.16,,"nsp13:K218R,M:I118","A16889G,T26876C,G29557T",,,,,,,,
B.1.160.19,,"nsp2:N414,nsp14:M153I","T2047C,G18498T",,,,,,,,
B.1.160.20,,"nsp3:T608,nsp3:T1036I,nsp6:Y175,RdRp:A185S,RdRp:V776L,nsp13:K218R,nsp13:E261D,nsp14:V263,N:M234I","C4543T,C5826T,C11497T,G13993T,G15766T,A16889G,G17019T,C18828T,G28975C","N:M234I,nsp13:E261D",,,,,,,
B.1.160.22,,"nsp7:D44,RdRp:V776L","T11974C,G15766T",,,,,,,,
B.1.160.23,,"ORF7a:F6L,N:R385K","T27409C,G29427A",N:R385K,,,,,,,
B.1.160.25,,"nsp7:S61,RdRp:A526V,nsp14:A1S","C12025T,C15017T,G18040T",,,,,,,,
B.1.160.26,,"ORF3a:N257,M:I118,ORF7b:C41F","T26163C,T26876C,G27877T",,,,,,,,
B.1.160.27,,"nsp1:P80S,nsp4:M324I,nsp6:Y175,RdRp:V776L,nsp14:L280,M:V66,M:I118","C503T,G9526T,C11497T,G15766T,C18877T,G26720T,T26876C",,,,,,,,
B.1.160.28,,"nsp13:K218R,N:G25C","A16889G,G28346T",N:G25C,,,,,,,
B.1.160.29,,"RdRp:V776L,ORF3a:E239D,M:I118","G15766T,G26109T,T26876C",ORF3a:E239D,,,,,,,
B.1.160.33,,"nsp3:T608,nsp3:T970,nsp4:M324I,nsp6:Y175,RdRp:F48,RdRp:A185S,RdRp:V776L,nsp13:K218R,nsp13:E261D,nsp14:L280,ORF3a:L106,M:Y71,M:I118,N:M234I,N:A376T","C4543T,G5629T,G9526T,C11497T,C13584T,G13993T,G15766T,A16889G,G17019T,C18877T,C25710T,C26735T,T26876C,G28975C,G29399A,GTACGATCGAGTGTAC29747GTAC","N:M234I,N:A376T,nsp13:E261D",,,,,,,
B.1.160.9,,"nsp3:E324G,nsp13:K218R","A3690G,A16889G",,,,,,,,
B.1.162,,"RdRp:L638,nsp14:L280","T15354C,C18877T",,,,,,,,
B.1.163,,"3CLpro:V247F,nsp14:L280","G10793T,C18877T",,,,,,,,
B.1.164,,"nsp2:N133D,nsp14:L280,ORF3a:L106","A1202G,C18877T,C25710T",,,,,,,,
B.1.165,,"nsp2:T85I,nsp3:A1711V,nsp15:P205S,ORF3a:Q57H","C1059T,C7851T,C20233T,G25563T",,,,,,,,
B.1.168,,"nsp14:M58I,nsp14:Y260C","G18213T,A18818G",,,,,,,,
B.1.177,,"M:L93,ORF10:V30L","C26801G,G29645T",,,,,,,,
B.1.177.10,,"M:L93,N:T16","C26801G,G28321A",,,,,,,,
B.1.177.11,,"S:D1163Y,S:G1167V","G25049T,G25062T","S:D1163Y,S:G1167V",,,,,,,
B.1.177.12,,"nsp16:S1,S:D1084","T20661C,T24814C",,,,,,,,
B.1.177.15,,"3CLpro:F8,N:P302","C10078T,G29179T",,,,,,,,
B.1.177.16,,"M:L93,N:P13T","C26801G,C28310A",N:P13T,,,,,,,
B.1.177.17,,"nsp1:D48G,M:L93","A408G,C26801G",,,,,,,,
B.1.177.18,,"S:E583D,ORF3a:K16N","G23311C,G25440T","S:E583D,ORF3a:K16N",,,,,,,
B.1.177.19,,"S:E583D,N:I304","G23311C,T29185A",S:E583D,,,,,,,
B.1.177.2,,"RdRp:G427,ORF3a:F43V","T14721C,T25519G",,,,,,,,
B.1.177.20,,"3CLpro:A191V,S:E583D,M:L93","C10626T,G23311C,C26801G","3CLpro:A191V,S:E583D",,,,,,,
B.1.177.21,,"nsp1:V60,nsp3:T1189,nsp13:V2,M:L93,ORF8:H17","T445C,C6286T,T16242A,C26801G,C27944T",,,,,,,,
B.1.177.23,,"RdRp:Y455,nsp13:V348L,ORF10:V30L","C14805T,G17278T,G29645T",,,,,,,,
B.1.177.26,,"nsp6:V60,S:E583Q,N:A55S","C11152T,G23309C,G28436T","S:E583Q,N:A55S",,,,,,,
B.1.177.28,,"nsp3:D309,nsp9:A28,nsp15:V22L","C3646T,G12769T,G19684T",,,,,,,,
B.1.177.3,,"nsp2:S394,nsp3:V1209L,ORF8:H17","A1987G,G6344T,C27944T",,,,,,,,
B.1.177.30,,"S:N164T,S:E583D","A22053C,G23311T","S:N164T,S:E583D",,,,,,,
B.1.177.31,,"nsp3:T608,nsp3:T970,RdRp:A185S,ORF3a:L106,M:L93,M:I118,ORF7a:T39I,ORF7a:D51Y,N:A376T","C4543T,G5629T,G13993T,C25710T,C26801G,T26876C,C27509T,G27544T,G29399A,G29557T",N:A376T,,,,,,,
B.1.177.32,,"nsp3:A994V,nsp6:V60,M:L93","C5700T,C11152T,C26801G",,,,,,,,
B.1.177.33,,"nsp3:T1456I,S:G639S","C7086T,G23477A",S:G639S,,,,,,,
B.1.177.4,,"nsp2:S394,ORF3a:S74","A1987G,C25614T",,,,,,,,
B.1.177.43,,"nsp14:I15T,nsp16:S1,ORF10:V30L","T18083C,T20661C,G29645T",,,,,,,,
B.1.177.44,,"nsp16:S1,nsp16:M270I","T20661C,G21468T",,,,,,,,
B.1.177.45,,"nsp3:Y1102H,nsp15:V127F","T6023C,G19999T",nsp3:Y1102H,,,,,,,
B.1.177.47,,ORF3a:C133,"G204T,C25791T",,,,,,,,
B.1.177.48,,"M:L93,M:L138,ORF8:H17","C26801G,C26936T,C27944T",,,,,,,,
B.1.177.5,,"S:P1069,ORF3a:A23V","T24769C,C25460T",ORF3a:A23V,,,,,,,
B.1.177.52,,"nsp3:M768I,S:P1162R","G5023T,C25047G","nsp3:M768I,S:P1162R",,,,,,,
B.1.177.53,,"nsp1:V60,nsp4:L417,M:L93,ORF10:V30L","T445C,G9805T,C26801G,G29645T",,,,,,,,
B.1.177.54,,"nsp4:Y397,S:A694","C9745T,C23644T",,,,,,,,
B.1.177.55,,"nsp4:Y397,M:D209Y","C9745T,G27147T",M:D209Y,,,,,,,
B.1.177.57,,"nsp3:T1363I,nsp4:Y397","C6807T,C9745T",,,,,,,,
B.1.177.58,,"ORF3a:T64I,ORF10:V30L","C25583T,G29645T",,,,,,,,
B.1.177.6,,"nsp3:P1200S,ORF8:H17","C6317T,C27944T",,,,,,,,
B.1.177.60,,"nsp1:V60,ORF3a:V77F,ORF8:H17","T445C,G25621T,C27944T",,,,,,,,
B.1.177.62,,"nsp3:T1492,S:T51I,S:D936Y","C7195T,C21714T,G24368T","S:T51I,S:D936Y",,,,,,,
B.1.177.63,,"nsp6:R187,S:A924,M:N121","G204T,A11533G,C24334T,C26885T",,,,,,,,
B.1.177.65,,nsp13:P47,"G204T,G16377A",,,,,,,,
B.1.177.69,,"3CLpro:N180,S:S929T","C10594T,G24348C",S:S929T,,,,,,,
B.1.177.7,,RdRp:T680,"G204T,C15480T",,,,,,,,
B.1.177.71,,"nsp3:T1189,S:M1237I,ORF10:V30L","C6286T,G25273T,G29645T",S:M1237I,,,,,,,
B.1.177.73,,"nsp3:I1608,ORF3a:T223N","T7543C,C26060A",,,,,,,,
B.1.177.74,,"nsp3:L1791F,ORF3a:F230,N:T141I","C8090T,C26082T,C28695T",N:T141I,,,,,,,
B.1.177.75,,"nsp3:T1189,nsp3:Y1855","C6286T,T8284C",,,,,,,,
B.1.177.77,,nsp3:N291,"G204T,T3592C",,,,,,,,
B.1.177.8,,"nsp3:R1820,ORF8:H17","G8179T,C27944T",,,,,,,,
B.1.177.82,,N:A35,"G28378T,G29757T",,,,,,,,
B.1.177.83,,"nsp2:C236,nsp2:A419,M:L93","C1513T,C2062T,C26801G",,,,,,,,
B.1.177.84,,"nsp2:C236,nsp15:T325I,ORF3a:R68I","C1513T,C20594T,G25595T",,,,,,,,
B.1.177.85,,"nsp3:A264T,ORF8:H17","G3509A,C27944T",,,,,,,,
B.1.177.86,,ORF7b:E39*,"G204T,G27870T",,,,,,,,
B.1.177.87,,"nsp2:C236,N:H145Y","C1513T,C28706T",N:H145Y,,,,,,,
B.1.177.89,,S:I993,"T24541A,G29751T",,,,,,,,
B.1.178,,"RdRp:N628,RdRp:L883,ORF8:S103","C15324T,G16089A,G28202A",,,,,,,,
B.1.181,,"nsp2:P446,N:T366R","C2143T,C29370G",N:T366R,,,,,,,
B.1.188,,"nsp6:D112,RdRp:D608","C11308T,T15264C",,,,,,,,
B.1.189,,"nsp3:N621,nsp3:V1229F,N:A35","C4582T,G6404T,G28378T",,,,,,,,
B.1.190,,"nsp8:L153,nsp16:Q28K","G12550A,C20740A",,,,,,,,
B.1.198,,nsp14:Q343K,"A187G,C19066A",,,,,,,,
B.1.2,,"nsp2:T85I,3CLpro:L89F,nsp14:N129D,nsp16:R216C,ORF3a:G172V,ORF8:S24L,N:P67S,N:P199L","C1059T,C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T","N:P67S,3CLpro:L89F,ORF8:S24L,ORF3a:G172V",,,,,,,
B.1.210,,"nsp3:N305,RdRp:N628","C241T,C3634T,C15324T",,,,,,,,
B.1.213,,"nsp3:N1438D,RdRp:N628","A7031G,C15324T",,,,,,,,
B.1.214,,"nsp3:I580V,nsp8:A74V","A4457G,C12312T",,,,,,,,
B.1.214.2,,"nsp3:I580V,nsp3:T1063I,S:Q414K,S:T716I","A4457G,C5907T,C22802A,C23709T",S:T716I,S:Q414K,,,,,,
B.1.214.3,,"nsp1:Y136,nsp3:I580V,nsp6:Y153C,nsp8:A74V","C673T,A4457G,A11430G,C12312T",,,,,,,,
B.1.218,,"nsp3:D174N,N:D128N","G3239A,G28655A",N:D128N,,,,,,,
B.1.219,,"RdRp:N628,S:E281V","C15324T,A22404T",S:E281V,,,,,,,
B.1.22,,"nsp2:S263,nsp6:A46V,ORF3a:Q57H","C1594T,C11109T,G25563T",,,,,,,,
B.1.220,,"3CLpro:T169,RdRp:N628","T10561C,C15324T",,,,,,,,
B.1.221,,ORF3a:Q38R,A25505G,,,,,,,,
B.1.221.1,,"nsp3:V575L,RdRp:P868","G4442T,A16044T",,,,,,,,
B.1.221.2,,"nsp3:E595D,nsp6:K263N,ORF8:T80","G4504T,G11761T,A28133T",,,,,,,,
B.1.223,,"RdRp:M666I,nsp15:L216","G15438T,A20268G",,,,,,,,
B.1.225,,"nsp9:T77I,nsp15:L216","C12915T,A20268G",,,,,,,,
B.1.23,,"nsp3:Y1573,N:Y360","T7438C,C29353T",,,,,,,,
B.1.231,,"nsp2:S303,N:S194L","C1714T,C28854T",,,,,,,,
B.1.232,,"ORF8:V32L,N:S194L","G27987T,C28854T",,,,,,,,
B.1.233,,"N:S194L,N:T334K","C28854T,C29274A",,,,,,,,
B.1.234,,"nsp3:K1241R,nsp3:S1807","A6441G,C8140T",,,,,,,,
B.1.235,,"nsp15:V10L,ORF10:R20","G19648T,A29617G",,,,,,,,
B.1.236,,"nsp9:D25G,nsp14:A85S","A12759G,G18292T",,,,,,,,
B.1.237,,"nsp2:E453D,nsp15:L216","G2164C,A20268G",,,,,,,,
B.1.239,,"nsp13:V169I,N:S194L","G16741A,C28854T",,,,,,,,
B.1.240.2,,"nsp3:K259N,nsp15:F213","G3496T,C20259T",,,,,,,,
B.1.243.1,,,A28264ACGC,,,,,,,,
B.1.243.2,,"S:N751K,S:F833","T23815G,C24061T",S:N751K,,,,,,,
B.1.248,,"nsp6:L230I,ORF3a:V13L,N:S190G","T11660A,G25429T,A28841G",,,,,,,,
B.1.249,,"nsp16:V294F,S:G257D,ORF3a:V13L","G21538T,G22332A,G25429T",S:G257D,,,,,,,
B.1.250,,"nsp3:F106,ORF3a:V13L,ORF8:A51V","C241T,C3037T,G25429T,C28045T",,,,,,,,
B.1.251,,"nsp2:K112N,ORF3a:V13L","G1141T,G25429T",,,,,,,,
B.1.254,,"ORF3a:V13L,M:I52T","G25429T,T26677C",M:I52T,,,,,,,
B.1.256,,"nsp3:A231V,nsp3:P389L,nsp13:H290Y","C3411T,C3885T,C17104T",nsp13:H290Y,,,,,,,
B.1.258,,"nsp3:Y1776,nsp13:H290Y","C8047T,C17104T",nsp13:H290Y,,,,,,,
B.1.258.10,,"nsp3:S1734A,nsp3:Y1776,nsp9:M101I,RdRp:V720I,nsp13:H290Y,nsp13:A598S,nsp15:N277,S:T1116,M:R150","T7919G,C8047T,G12988T,G15598A,C17104T,G18028T,C20451T,T24910C,T26972C,G29734C",nsp13:H290Y,,,,,,,
B.1.258.12,,"nsp3:Y1776,nsp9:M101I,RdRp:V720I,nsp13:H290Y,nsp13:A598S,nsp14:V182I,S:N439K,S:T1116,M:R150","C8047T,G12988T,G15598A,C17104T,G18028T,G18583A,C22879A,T24910C,T26972C,G29734C",nsp13:H290Y,S:N439K,,,,,,
B.1.258.14,,"nsp3:I1683T,nsp3:Y1776,nsp13:H290Y,nsp15:L216,S:N439K,N:S194L","T7767C,C8047T,C17104T,A20268G,C22879A,C28854T",nsp13:H290Y,S:N439K,,,,,,
B.1.258.16,,"nsp4:D56N,S:F1121","G8720A,T24925C",,,,,,,,
B.1.258.2,,"nsp2:G220D,nsp3:I1683T,nsp3:Y1776,nsp16:Y47,N:G34","G1464A,T7767C,C8047T,T20799C,G28375T",,,,,,,,
B.1.258.23,,"nsp1:R73C,S:V1065","C482T,G24757T",,,,,,,,
B.1.258.24,,"nsp3:I1683T,nsp3:Y1776,nsp9:M101I,RdRp:V720I,nsp13:H290Y,nsp13:A598S,nsp15:L216,S:N439K,S:T1116,ORF3a:T223S,M:R150,ORF7b:A15","T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,A20268G,C22879A,T24910C,A26059T,T26972C,C27800A,G29734C",nsp13:H290Y,S:N439K,,,,,,
B.1.258.3,,"nsp13:H290Y,nsp14:S255I","C17104T,G18803T",nsp13:H290Y,,,,,,,
B.1.258.4,,"nsp3:Y1776,nsp9:M101I,RdRp:V720I,nsp13:H290Y,nsp13:A598S,S:V772I,S:T1116,S:G1219V,ORF3a:Q185H,N:T334I","C8047T,G12988T,G15598A,C17104T,G18028T,G23876A,T24910C,G25218T,G25947T,C29274T","ORF3a:Q185H,S:V772I,nsp13:H290Y,S:G1219V",,,,,,,
B.1.258.5,,"nsp3:T1797,nsp13:A598S","T8110C,G18028T",,,,,,,,
B.1.258.6,,"RdRp:V720I,S:T1116,ORF3a:T34","G15598A,T24910C,C25386T,G25494T",,,,,,,,
B.1.258.7,,"RdRp:V720I,ORF3a:T34,N:A182S","G15598A,G25494T,G28817T",,,,,,,,
B.1.265,,"ORF8:S24L,N:S187L","C27964T,C28833T",ORF8:S24L,,,,,,,
B.1.267,,"nsp2:T85I,nsp3:I1845V","C1059T,A8252G",,,,,,,,
B.1.273,,"nsp2:Y537,RdRp:S6L,nsp16:V96","C2416T,C13458T,C20946T",,,,,,,,
B.1.274,,"nsp2:S430L,nsp2:Y537,ORF3a:Q57H","C2094T,C2416T,G25563T",,,,,,,,
B.1.276,,ORF7b:H42,"G26233T,C27881T",,,,,,,,
B.1.277,,"nsp2:Y537,nsp15:Y88,ORF3a:Q57H","C241T,C2416T,C19884T,G25563T",,,,,,,,
B.1.280,,"nsp13:T127I,N:T205I","C16616T,C28887T",,,,,,,,
B.1.281,,"nsp3:T73I,nsp3:Q1884H","C2937T,G8371T",,,,,,,,
B.1.282,,"nsp2:A26V,N:G212C","C882T,G28907T",N:G212C,,,,,,,
B.1.287,,"nsp15:S312F,S:V70","C20555T,C21772T",,,,,,,,
B.1.293,,"RdRp:Q822H,nsp16:A34V","G15906T,C20759T",,,,,,,,
B.1.294,,"nsp15:P93,nsp16:D269G","A19899T,A21464G",,,,,,,,
B.1.298,,"nsp3:V765F,N:S190R","G5012T,T28843G",nsp3:V765F,,,,,,,
B.1.3,,"nsp7:S25L,S:Q675R","C11916T,A23586G",S:Q675R,,,,,,,
B.1.304,,"nsp3:T864I,nsp8:T68I","C5310T,C12294T",nsp3:T864I,,,,,,,
B.1.305,,"RdRp:A185V,nsp13:L428F,S:L54F","C13994T,C17518T,G21724T",S:L54F,,,,,,,
B.1.306,,"ORF3a:L129F,ORF10:C19","C25777T,C29614T",,,,,,,,
B.1.308,,"RdRp:E436G,nsp16:S33R,S:W152L","A14747G,A20755C,G22017T",S:W152L,,,,,,,
B.1.309,,"nsp2:Q395H,nsp3:I849V","G1990T,A5264G",,,,,,,,
B.1.310,,"nsp14:R81K,ORF3a:W131L","G18281A,G25784T",,,,,,,,
B.1.311,,"nsp8:T145I,N:P207L","C12525T,C28893T",N:P207L,,,,,,,
B.1.313,,"nsp2:A318V,nsp8:T148I","C1758T,C12534T",,,,,,,,
B.1.315,,"nsp2:T85I,S:N856S","C1059T,A24129G",S:N856S,,,,,,,
B.1.318,,"S:C840,N:R203G","C24082T,A28880G",,,,,,,,
B.1.319,,"nsp2:T85I,3CLpro:A266V","C1059T,C10851T",3CLpro:A266V,,,,,,,
B.1.324,,"nsp2:T85I,nsp3:V1603,ORF3a:Q57H,N:S206F","C1059T,C7528T,G25563T,C28890T",,,,,,,,
B.1.325,,"nsp3:L738I,nsp13:L295I","C4931A,C17119A","nsp13:L295I,nsp3:L738I",,,,,,,
B.1.328,,"nsp1:T170,ORF8:I10,N:M234I","C775T,C27923T,G28975T",N:M234I,,,,,,,
B.1.329,,"nsp3:V1229,nsp14:K311","C6406T,G18972A",,,,,,,,
B.1.330,,"nsp2:G220S,nsp3:R1613K,nsp4:C88","G1463A,G7557A,C8818T",,,,,,,,
B.1.332,,"nsp2:T85I,nsp2:T371I,ORF3a:Q57H","C1059T,C1917T,G25563T",,,,,,,,
B.1.334,,"nsp2:T85I,RdRp:G432,ORF3a:Q57H,N:S190G","C1059T,A14736G,G25563T,A28841G",,,,,,,,
B.1.335,,"nsp1:E91,nsp4:L185","A538G,T9107C",,,,,,,,
B.1.337,,"nsp1:F70,nsp3:F1089,N:Q39L","C475T,C5986T,A28389T",N:Q39L,,,,,,,
B.1.338,,"nsp3:A1311V,nsp14:D172,nsp15:V320","C6651T,C18555T,G20580T",,,,,,,,
B.1.340,,"nsp3:E493G,N:T148S","A4197G,A28715T",N:T148S,,,,,,,
B.1.341,,"nsp2:T85I,nsp8:I156L","C1059T,A12557C",,,,,,,,
B.1.344,,"nsp2:T85I,nsp3:F106,ORF3a:S26A,ORF3a:Q57H","C1059T,C3037T,T25468G,G25563T",ORF3a:S26A,,,,,,,
B.1.346,,"nsp9:L45,nsp16:T35I,N:T205I","A12820G,C20762T,C28887T",,,,,,,,
B.1.348,,"nsp3:I617,N:N228","C4570T,C28957T",,,,,,,,
B.1.349,,"nsp14:D172,N:P207S","C18555T,C28892T",N:P207S,,,,,,,
B.1.351,Beta,"S:D80A,E:P71L","A21801C,C26456T",S:D80A,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.351,105.68,224.94,90.41,189.33
B.1.351.2,Beta,"nsp3:N1778S,3CLpro:A193V","A8052G,C10632T","nsp3:N1778S,3CLpro:A193V",,,,0.0,0.0,1247.71,2404.51
B.1.351.3,Beta,"nsp3:V1635,3CLpro:V114,S:D80A","T7624C,G10396T,A21801C",S:D80A,,,,0.0,0.0,81326.24,27599.17
B.1.355,,"nsp3:V1538A,N:R191L","T7332C,G28845T",,,,,,,,
B.1.356,,"nsp9:A107,ORF3a:A99V","T13006C,C25688T",,,,,,,,
B.1.359,,"nsp7:S25L,N:A35S","C11916T,G28376T",N:A35S,,,,,,,
B.1.36.1,,"nsp6:V84,nsp7:D67","C11224T,C12043T",,,,,,,,
B.1.36.12,,"GFL:H48,S:D294,S:V1068F","C13168T,C22444T,G24764T",S:V1068F,,,,,,,
B.1.36.16,,"ORF3a:T34,M:Y71","G25494T,C26735T",,,,,,,,
B.1.36.18,,"nsp3:V1770F,S:G75R","G8027T,G21785C","nsp3:V1770F,S:G75R",,,,,,,
B.1.36.2,,"nsp4:F17,S:P1263T","C8605T,C25349A",S:P1263T,,,,,,,
B.1.36.20,,"3CLpro:M49T,nsp8:A152","T10200C,A12547G",3CLpro:M49T,,,,,,,
B.1.36.23,,"nsp8:T141M,RdRp:G228C","C12513T,G14122T",,,,,,,,
B.1.36.24,,"nsp14:L280,S:V213,M:Y71,N:S194L","C18877T,G22201T,C26735T,C28854T",,,,,,,,
B.1.36.27,,"nsp3:A1179V,nsp3:Y1595,S:A871","C6255T,C7504T,T24175C",,,,,,,,
B.1.36.28,,"nsp3:V1897,nsp4:V180I,S:D808","T8410C,G9092A,T23986C",,,,,,,,
B.1.36.29,,"nsp3:T183I,nsp16:L126F,ORF3a:E261*,ORF8:S97I","C3267T,C21034T,G26173T,G28183T",ORF3a:E261*,,,,,,,
B.1.36.31,,"nsp2:A306V,nsp6:V84F,ORF3a:T24I","C1722T,G11222T,C25463T",ORF3a:T24I,,,,,,,
B.1.36.34,,"nsp14:S255C,nsp14:D331","A18802T,C19032T",,,,,,,,
B.1.36.35,,"ORF3a:K16N,M:Y71","G25440T,C26735T",ORF3a:K16N,,,,,,,
B.1.36.39,,"nsp4:T461N,RdRp:I847","C9936A,C15981T",,,,,,,,
B.1.36.7,,nsp6:Y80C,A11211G,,,,,,,,
B.1.36.9,,"nsp2:T573I,nsp6:A46V,S:T859N","C2523T,C11109T,C24138A",S:T859N,,,,,,,
B.1.361,,"nsp6:V149F,nsp16:K141R","G11417T,A21080G",,,,,,,,
B.1.362,,"nsp1:L140,3CLpro:N65","C683T,T10249C",,,,,,,,
B.1.362.1,,"nsp2:G115C,nsp3:P108S,3CLpro:N65","G1148T,C3041T,T10249C",,,,,,,,
B.1.362.2,,"3CLpro:N65,nsp13:L325F,ORF3a:W193L,ORF3a:W193*","T10249C,G17211T,G25970T,G25971A","nsp13:L325F,ORF3a:W193L,ORF3a:W193*",,,,,,,
B.1.363,,"nsp7:L71F,nsp13:S468L","C12053T,C17639T",nsp13:S468L,,,,,,,
B.1.366,,"nsp2:T85I,nsp3:D1774,S:S221","C1059T,T8041C,G22225T",,,,,,,,
B.1.367,,"3CLpro:V157,nsp7:M3I","C10525T,G11851T",,,,,,,,
B.1.37,,"nsp2:Y537,3CLpro:L220F,ORF3a:Q57H","C2416T,C10712T,G25563T",,,,,,,,
B.1.371,,"nsp2:T85I,ORF3a:Q57H","C241T,C1059T,G25563T,G29553A",,,,,,,,
B.1.375,,"nsp2:S122,3CLpro:D245","T1171C,C10789T",,,,,,,,
B.1.377,,"N:Q9H,N:G204R","G28300T,G28883A",N:Q9H,,,,,,,
B.1.379,,"nsp6:K270,S:R214L","A11782G,G22203T",S:R214L,,,,,,,
B.1.38,,"ORF3a:G44V,ORF7b:N38","G25523T,T27869C",,,,,,,,
B.1.381,,"nsp1:G30,nsp3:I458,nsp15:L216","C355T,C4093T,A20268G",,,,,,,,
B.1.383,,"nsp6:L37F,ORF3a:K61N","G11083T,A25575C",,,,,,,,
B.1.384,,"E:F4,ORF10:L37","C241T,C26256T,C29668T",,,,,,,,
B.1.385,,"nsp2:C161,ORF3a:G18V,N:S327","C1288T,G25445T,G29254T",ORF3a:G18V,,,,,,,
B.1.389,,"S:T723I,N:K257","C23730T,G29044A",S:T723I,,,,,,,
B.1.39,,"nsp2:T85I,nsp4:R78,ORF3a:Q57H,M:V143","C1059T,T8788C,G25563T,G26951A",,,,,,,,
B.1.391,,"nsp13:A18V,ORF3a:V13L","C16289T,G25429T",nsp13:A18V,,,,,,,
B.1.393,,"nsp3:A274T,N:D402Y","G3539A,G29477T",N:D402Y,,,,,,,
B.1.396,,"nsp4:L323I,S:I1114","C9521A,C24904T",,,,,,,,
B.1.397,,"nsp2:K110N,N:S194L","G1135T,C28854T",,,,,,,,
B.1.398,,"nsp3:V473I,nsp6:V84","G4136A,C11224T",,,,,,,,
B.1.40,,"nsp2:T85I,nsp2:P91S,3CLpro:D176","C1059T,C1076T,C10582T",,,,,,,,
B.1.400.1,,"nsp2:V126F,nsp2:Y207,3CLpro:P96L,nsp7:V33I","G1181T,C1426T,C10341T,G11939A",3CLpro:P96L,,,,,,,
B.1.402,,"nsp3:G638,RdRp:L401","C4633T,T14643C",,,,,,,,
B.1.403,,"nsp3:T626N,nsp14:K349N,nsp15:P343","C4596A,G19086T,A20649T",,,,,,,,
B.1.404,,"3CLpro:K90R,nsp13:V169,nsp14:K349N","A10323G,T16743C,G19086T",3CLpro:K90R,,,,,,,
B.1.405,,"S:E654K,ORF3a:N119H,N:S194L","G23522A,A25747C,C28854T",S:E654K,,,,,,,
B.1.407,,"nsp6:V91L,nsp14:H228","G11243T,T18723C",,,,,,,,
B.1.408,,"nsp4:I132,N:S194L,N:P309,N:T393I","C8950T,C28854T,C29200T,C29451T",N:T393I,,,,,,,
B.1.409,,"nsp3:A1766,ORF3a:D155Y","G8017T,G25855T",,,,,,,,
B.1.411,,"RdRp:D445G,RdRp:N874","A14774G,T16062C",RdRp:D445G,,,,,,,
B.1.415,,"RdRp:V764,nsp14:Y368","G15732T,T19143C",,,,,,,,
B.1.415.1,,"nsp13:E128G,S:L242","A16619G,ACTT22285A",,,,,,,,
B.1.416,,"nsp2:L274F,N:S187L","C1625T,C28833T",,,,,,,,
B.1.416.1,,"ORF3a:Y113,N:S187L","C25731T,C28833T",,,,,,,,
B.1.418,,"nsp3:T1251,nsp3:S1699F","C6472T,C7815T",,,,,,,,
B.1.420,,"nsp3:G255E,S:D627","G3483A,T23443C",,,,,,,,
B.1.421,,"3CLpro:L115,S:F186","A10399G,C22120T",,,,,,,,
B.1.423,,"nsp3:G601C,nsp3:K1241","G4520T,A6442G",,,,,,,,
B.1.425,,"nsp2:F10L,nsp4:C384F","T833C,G9705T",,,,,,,,
B.1.426,,"nsp2:F10L,S:D253G,ORF8:S24L","T833C,A22320G,C27964T","ORF8:S24L,S:D253G",,,,,,,
B.1.427,Epsilon,"RdRp:K91,nsp13:D260Y","G13713A,G17014T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.427,116.52,265.45,0.0,0.0
B.1.428.1,,"nsp2:T166I,3CLpro:A260,S:A522V","C1302T,C10834T,C23127T",S:A522V,,,,,,,
B.1.428.2,,"nsp2:T166I,nsp3:P778L,nsp3:F1142","C1302T,C5052T,C6145T",,,,,,,,
B.1.429,Epsilon,"nsp2:V530,nsp13:D260Y","C2395T,G17014T,A28272T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.427,104.98,227.31,0.0,0.0
B.1.429.1,Epsilon,"S:S13I,S:W152C,S:T531,S:S929","G21600T,G22018T,T23155C,T24349C","S:S13I,S:W152C",,,,111.32,253.21,0.0,0.0
B.1.431,,"nsp2:T85I,nsp3:N760,RdRp:A97V","C1059T,C4999T,C13730T",,,,,,,,
B.1.433,,"nsp3:S1375F,nsp6:N264","C6843T,T11764C",nsp3:S1375F,,,,,,,
B.1.435,,"nsp2:T85I,nsp3:T720I,ORF8:S24L,N:Y333","C1059T,C4878T,C27964T,C29272T",ORF8:S24L,,,,,,,
B.1.436,,N:S206F,"C28890T,T29710A",,,,,,,,
B.1.437,,"nsp2:G165S,nsp9:E3","G1298A,G12694A",,,,,,,,
B.1.438,,"nsp2:M117V,nsp14:L280,N:D401Y","A1154G,C18877T,G29474T",N:D401Y,,,,,,,
B.1.438.1,,"nsp2:M117V,nsp3:V1811","A1154G,C8152T",,,,,,,,
B.1.438.3,,"nsp3:R810C,nsp4:M458I,nsp15:D91Y","C5147T,G9928T,G19891T",,,,,,,,
B.1.438.4,,"nsp2:M117V,nsp8:S8,M:L120","A1154G,C12115T,C26882T",,,,,,,,
B.1.439,,"nsp2:T371,nsp14:L280","T1918C,C18877T",,,,,,,,
B.1.44,,"3CLpro:P108S,nsp14:V182L,S:D936Y","C10376T,G18583T,G24368T","3CLpro:P108S,S:D936Y",,,,,,,
B.1.441,,"nsp3:Y1859,N:L139F","T8296C,G28690T",N:L139F,,,,,,,
B.1.443,,"nsp3:F106,nsp6:M92L,nsp14:L280,ORF3a:Q57H","C3037T,A11246T,C18877T,G25563T",,,,,,,,
B.1.444,,"nsp2:V6,nsp3:D455,nsp6:V131,ORF8:S21N","C823T,C4084T,G11365A,G27955A",ORF8:S21N,,,,,,,
B.1.445,,"nsp3:Y899,RdRp:E436G","C5416T,A14747G",,,,,,,,
B.1.448,,"S:D663,N:S183Y","C23551T,C28821A",,,,,,,,
B.1.460,,"nsp8:T145I,RdRp:V560,M:Y71","C12525T,C15120T,C26735T",,,,,,,,
B.1.462,,"nsp3:L364,nsp14:L280,M:Y71","C3811T,C18877T,C26735T",,,,,,,,
B.1.465,,"nsp14:L280,S:A879S","C18877T,G24197T",,,,,,,,
B.1.466.1,,"nsp3:P1200Q,nsp15:T114A","C6318A,A19960G",,,,,,,,
B.1.466.2,,"S:G219,S:N439K","T22219C,C22879A",,S:N439K,,,,,,
B.1.467,,"nsp3:M829I,M:Y71,N:S201I","G5206T,C26735T,G28875T",,,,,,,,
B.1.469,,"nsp7:N78S,N:T198I","A12075G,C28866T",,,,,,,,
B.1.471,,"nsp13:L227,S:G880","C16915T,T24202C",,,,,,,,
B.1.474,,"nsp2:Y537,ORF8:T26N","C2416T,C27970A",ORF8:T26N,,,,,,,
B.1.478,,"ORF3a:G172D,N:N11I","G25907A,A28305T","N:N11I,ORF3a:G172D",,,,,,,
B.1.479,,"nsp2:Y537,3CLpro:A193S","C2416T,G10631T",3CLpro:A193S,,,,,,,
B.1.480,,"nsp2:L24F,nsp2:Y537","C875T,C2416T",,,,,,,,
B.1.485,,"nsp2:T85I,nsp15:N139","C1059T,T20037C",,,,,,,,
B.1.487,,"nsp2:T85I,nsp2:T310I,S:A701V,ORF3a:Q57H","C1059T,C1734T,C23664T,G25563T",S:A701V,,,,,,,
B.1.491,,"nsp3:Q128H,ORF8:D75V","A3103C,A28117T",ORF8:D75V,,,,,,,
B.1.492,,"nsp2:T85I,nsp3:P723,N:A152S","C1059T,T4888A,G28727T",N:A152S,,,,,,,
B.1.493,,"nsp2:T85I,nsp7:S25L,ORF3a:D210Y","C1059T,C11916T,G26020T",,,,,,,,
B.1.494,,"nsp2:T85I,nsp7:S25L,GFL:Y76","C1059T,C11916T,C13252T",,,,,,,,
B.1.495,,"nsp2:T85I,nsp7:S25L,ORF3a:Q57H,ORF8:W45L","C1059T,C11916T,G25563T,G28027T,G29742T",,,,,,,,
B.1.496,,"nsp2:A127,nsp3:Y438","G1186A,T4033C",,,,,,,,
B.1.497,,"nsp13:L138,nsp16:Q6L","C16650T,A20675T",,,,,,,,
B.1.498,,"nsp13:E201,nsp14:A320V","A16839G,C18998T",,,,,,,,
B.1.499,,"nsp14:A320V,N:S197L","C18998T,C28863T",,,,,,,,
B.1.501,,"3CLpro:T135I,nsp14:A320V,M:L102","C10458T,C18998T,G26828T",,,,,,,,
B.1.502,,"nsp7:S25L,RdRp:N158","C11916T,T13914C",,,,,,,,
B.1.503,,"nsp7:S25L,nsp14:A320V,ORF3a:Q185H","C11916T,C18998T,G25947C,G29540A",ORF3a:Q185H,,,,,,,
B.1.504,,"nsp7:S25L,ORF3a:L275F","C11916T,G26217T,G29540A",ORF3a:L275F,,,,,,,
B.1.505,,"nsp7:S25L,nsp13:V356,nsp14:A320V","C11916T,C17304T,C18998T",,,,,,,,
B.1.507,,"nsp7:S25L,nsp14:A320V,nsp15:L311","C11916T,C18998T,A20553G",,,,,,,,
B.1.508,,"nsp14:A320V,nsp14:S369F","C18998T,C19145T",,,,,,,,
B.1.509,,"nsp2:V311,nsp7:S25L","G1738T,C11916T",,,,,,,,
B.1.515,,"nsp15:I143,S:S698L","T20049C,C23655T",S:S698L,,,,,,,
B.1.516,,"N:G116,N:R209I","G28621A,G28899T",N:R209I,,,,,,,
B.1.517,,"nsp3:G171V,N:S206F","G3231T,C28890T",,,,,,,,
B.1.521,,"nsp13:S38L,nsp16:T151I,ORF8:S24L","C16349T,C21110T,C27964T",ORF8:S24L,,,,,,,
B.1.523,,"nsp14:L280,ORF3a:I249,M:Y71,N:M234I","C18877T,C26139T,C26735T,G28975T",N:M234I,,,,,,,
B.1.524,,"3CLpro:T24A,ORF8:T80","A10124G,A28133T",3CLpro:T24A,,,,,,,
B.1.525,Eta,"nsp14:G44,S:F1062","C18171T,C24748T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.525,1780.12,2943.14,117.35,250.07
B.1.526,Iota,"nsp4:L438P,nsp13:Q88H","T9867C,A16500C",nsp13:Q88H,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.526,271.39,511.67,0.0,0.0
B.1.530,,"nsp3:Q191R,nsp13:M233I","A3291G,G16935T",,,,,,,,
B.1.532,,"N:G60,N:A397","C28453T,T29464C",,,,,,,,
B.1.539,,"nsp2:G165,nsp14:I275T","C1300T,T18863C",,,,,,,,
B.1.541,,"3CLpro:D33,nsp13:M576I,N:S187L","T10153C,G17964T,C28833T",,,,,,,,
B.1.543,,"E:S68F,E:D72","C26447T,T26460C",,,,,,,,
B.1.544,,"3CLpro:N228S,N:S202R","A10737G,T28879A",3CLpro:N228S,,,,,,,
B.1.546,,"nsp13:S468L,S:L822F","C17639T,C24026T","S:L822F,nsp13:S468L",,,,,,,
B.1.549,,"nsp6:Q160R,nsp13:A296S,nsp13:A362S","A11451G,G17122T,G17320T",,,,,,,,
B.1.550,,"nsp2:S263,nsp14:L149,S:Y200","C1594T,C18486T,T22162C",,,,,,,,
B.1.551,,"nsp3:F106,nsp3:P340L,RdRp:P323L,nsp15:L216,S:P681R,N:S194L","C241T,C3037T,C3738T,C14408T,A20268G,C23604G,C28854T",S:P681R,,,,,,,
B.1.552,,"nsp3:D729Y,nsp3:M829I","G4904T,G5206T",nsp3:D729Y,,,,,,,
B.1.554,,"nsp3:A1570V,nsp16:L21","C7428T,C20719T",,,,,,,,
B.1.556,,"nsp14:L7,N:E367D","C18060A,G29374T",N:E367D,,,,,,,
B.1.557,,"3CLpro:N180,nsp13:D369G","C10594T,A17342G",nsp13:D369G,,,,,,,
B.1.559,,"nsp3:F106,RdRp:P323L,nsp13:V348L,ORF3a:V13L","C241T,C3037T,C14408T,G17278T,G25429T",,,,,,,,
B.1.561,,"nsp14:S218,ORF3a:I62T","C18693T,T25577C",,,,,,,,
B.1.563,,"nsp3:M196I,S:A668","G3307T,A23566T",,,,,,,,
B.1.565,,"nsp1:D144A,nsp3:K384N,nsp3:T1189I","A696C,G3871T,C6285T",nsp3:T1189I,,,,,,,
B.1.567,,"3CLpro:L89F,nsp6:F201,ORF8:S24L,N:P199S","C10319T,C11575T,C27964T,C28868T","3CLpro:L89F,ORF8:S24L",,,,,,,
B.1.568,,"nsp8:L122I,nsp13:T416I","C12455A,C17483T",nsp13:T416I,,,,,,,
B.1.569,,"nsp2:D43H,nsp3:A54V","G932C,C2880T",,,,,,,,
B.1.570,,"S:P681L,ORF3a:K21N","C23604T,G25455T","S:P681L,ORF3a:K21N",,,,,,,
B.1.571,,"nsp3:L287,RdRp:L838","A3580G,C15952T",,,,,,,,
B.1.574,,nsp8:K36Q,"G248T,A12197C",,,,,,,,
B.1.575,,nsp13:P47S,"C16375T,C29719T",,,,,,,,
B.1.575.1,,"nsp2:P125,N:A414S","A1180G,G29513T",N:A414S,,,,,,,
B.1.577,,"3CLpro:L89F,nsp13:T153I","C10319T,C16694T","3CLpro:L89F,nsp13:T153I",,,,,,,
B.1.579,,"nsp9:Y66,N:G116","T12883C,G28621A",,,,,,,,
B.1.581,,"nsp3:V1234,RdRp:P612","G6421T,T15276A",,,,,,,,
B.1.585,,"nsp3:E643,nsp6:N264,nsp13:A208V,N:M234I,ORF10:C19","A4648G,T11764C,C16859T,G28975T,C29614T",N:M234I,,,,,,,
B.1.587,,"nsp3:Y801,nsp3:K1111,3CLpro:L58,3CLpro:L89F,nsp15:V84,S:D178G,ORF3a:D155Y,N:S327","T5122C,G6052A,C10228T,C10319T,G19872T,A22095G,G25855T,G29254T","3CLpro:L89F,S:D178G",,,,,,,
B.1.588,,"3CLpro:L89F,S:V213,N:S327","C10319T,G22201T,G29254T",3CLpro:L89F,,,,,,,
B.1.590,,"nsp3:M84V,E:V49L,ORF8:S24L","A2969G,G26389T,C27964T",ORF8:S24L,,,,,,,
B.1.591,,"nsp4:V344G,3CLpro:L89F,nsp7:L76,GFL:P84S,ORF8:S24L","T9585G,C10319T,C12068T,C13274T,C27964T","3CLpro:L89F,ORF8:S24L",,,,,,,
B.1.594,,"nsp3:T1714I,nsp13:F291Y","C7860T,T17108A",nsp13:F291Y,,,,,,,
B.1.595.1,,"nsp13:L158,S:N1187Y","G16710T,A25121T",S:N1187Y,,,,,,,
B.1.595.3,,"3CLpro:T224A,S:T638A","A10724G,A23474G",S:T638A,,,,,,,
B.1.595.4,,"nsp2:A336V,3CLpro:L89F,RdRp:H75","C1812T,C10319T,C13665T",3CLpro:L89F,,,,,,,
B.1.596,,"nsp2:T85I,3CLpro:L89F,nsp14:N129D,S:V1228L,ORF3a:G172V,ORF8:S24L,N:P67S,N:P199L","C1059T,C10319T,A18424G,G25244T,G25907T,C27964T,C28472T,C28869T","N:P67S,3CLpro:L89F,ORF8:S24L,ORF3a:G172V",,,,,,,
B.1.596.1,,"nsp13:E341D,S:T73I,N:R195K","G17259T,C21780T,G28857A",S:T73I,,,,,,,
B.1.599,,"M:T9,N:P207L","C26549T,C28893T",N:P207L,,,,,,,
B.1.601,,"nsp13:Q281H,ORF3a:P42","G17079T,T25518G",,,,,,,,
B.1.602,,"nsp2:A386T,nsp4:T269I,S:G838","G1961A,C9360T,T24076C",,,,,,,,
B.1.603,,"nsp3:T725K,S:N370S,ORF3a:A99T","C4893A,A22671G,G25687A",,S:N370S,,,,,,
B.1.604,,"nsp13:P300S,nsp16:N196S","C17134T,A21245G",nsp13:P300S,,,,,,,
B.1.605,,"RdRp:T85I,RdRp:D221","C13694T,T14103C",,,,,,,,
B.1.606,,"nsp4:Y487,M:A83S","C10015T,G26769T",,,,,,,,
B.1.610,,"nsp3:L930M,nsp15:L216,N:Y298","T5507A,A20268G,C29167T",,,,,,,,
B.1.617,,"nsp3:T749I,nsp13:M429I","C4965T,G17523T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617,,,,
B.1.617.1,Kappa,"nsp3:Y246,nsp13:M429I","C3457T,G17523T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617,74697.68,26457.91,2212.67,3070.63
B.1.617.2,Delta,"ORF3a:S26L,M:I82T,N:R203M","C25469T,T26767C,G28881T",ORF3a:S26L,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617.2,51.46,105.05,45.0,92.92
B.1.617.3,,"nsp3:A1526V,nsp3:T1830I,3CLpro:A194S,nsp6:A117V","C7296T,C8208T,G10634T,C11322T",,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617,0.0,0.0,0.0,0.0
B.1.619,,"nsp3:E1789K,RdRp:F321","G8084A,C14403T",,,,,,,,
B.1.620,,"nsp3:V1173I,S:V126A","G6236A,T21939C",S:V126A,,,,,,,
B.1.621,Mu,nsp3:T237A,A3428G,,,,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.621,84.53,175.87,61.02,130.51
B.1.621.1,Mu,"nsp3:T237A,nsp3:T720I,nsp4:T189I,nsp6:Q160R,GFL:S11,nsp13:P419S,nsp14:I332","A3428G,C4878T,C9120T,A11451G,A13057T,C17491T,T19035C",,,,,344.21,797.52,4875.95,9737.22
B.1.621.2,Mu,"nsp3:T237A,GFL:S11,nsp14:I332,S:Y449N","A3428G,A13057T,T19035C,T22907A",,S:Y449N,,,0.0,0.0,0.0,0.0
B.1.623,,"nsp4:T439M,N:M234I","C9870T,G28975A",N:M234I,,,,,,,
B.1.625,,"nsp3:K501E,nsp3:P1228S","A4220G,C6401T",,,,,,,,
B.1.626,,"3CLpro:S121L,nsp13:P242L","C10416T,C16961T",,,,,,,,
B.1.627,,"nsp2:E63,nsp3:S1717L,nsp4:A457V,nsp15:I168","A994G,C7869T,C9924T,T20124A",,,,,,,,
B.1.629,,nsp6:M52I,"G11128A,T26498C",,,,,,,,
B.1.630,,nsp1:L122F,"C629T,A28272G",,,,,,,,
B.1.631,,"nsp2:E63,S:S735A,S:N960,N:S186F","A994G,T23765G,C24442T,C26222T,C28830T",S:S735A,,,,,,,
B.1.632,,"nsp4:S163F,N:R41","C9042T,G28396T",,,,,,,,
B.1.634,,"nsp2:G12,N:N213Y","C841T,A28910T",N:N213Y,,,,,,,
B.1.635,,"nsp3:P395,nsp13:S100G,nsp13:V479,N:D81Y","A3904T,A16534G,T17673G,G28514T","N:D81Y,nsp13:S100G",,,,,,,
B.1.636,,"nsp4:E177,N:N8Y","A9085G,A28295T",N:N8Y,,,,,,,
B.1.637,,"nsp4:L438P,nsp6:V278I","T9867C,G11804A",,,,,,,,
B.1.637.1,,"S:LHRSY244Y,ORF3a:L15F","TTTACATAGAAGTT22291TT,G25437C",,,,,,,,
B.1.639,,"S:M153T,N:I157V","T22020C,A28742G","N:I157V,S:M153T",,,,,,,
B.1.640,,"S:E96Q,S:N394S","G21848C,A22743G","S:E96Q,S:N394S",,,,,,,
B.1.640.1,,"nsp3:L1301F,S:F490C","G6622T,T23031G",,S:F490C,,,,,,
B.1.640.2,,"nsp13:V371A,nsp15:G20","T17348C,T19680C",nsp13:V371A,,,,,,,
B.1.69,,"S:V620,S:L763","C23422T,T23849C",,,,,,,,
B.1.70,,"nsp2:A360V,nsp3:N1337","C1884T,C6730T,T26497C",,,,,,,,
B.1.9,,"nsp2:I436,nsp3:S1682,nsp14:L280","C2113T,C7765T,C18877T",,,,,,,,
B.1.9.1,,"nsp13:S485L,S:F1121L","C17690T,T24923C","nsp13:S485L,S:F1121L",,,,,,,
B.1.9.2,,"nsp3:I1074,S:A292","T5941C,A22438T",,,,,,,,
B.1.9.4,,"nsp1:L27,nsp2:I436,nsp3:S1682","C346T,C2113T,C7765T",,,,,,,,
B.1.93,,"RdRp:T141I,N:S188L","C13862T,C28836T",,,,,,,,
B.1.96,,"nsp6:Q208H,nsp15:K316","G11596T,G20568A",,,,,,,,
B.1.97,,"nsp3:K19R,RdRp:A43V","A2775G,C13568T",,,,,,,,
B.10,,"nsp3:P1326L,nsp6:T10I","C6696T,C11001T",,,,,,,,
B.11,,"nsp1:H83,nsp2:ND267N,nsp13:R392C","T514C,ATGA1605A,C17410T",nsp13:R392C,,,,,,,
B.12,,"nsp6:L260,N:N213","C11752T,T28912C",,,,,,,,
B.13,,nsp3:I707V,"A4838G,G29711T",,,,,,,,
B.15,,"nsp3:L744,nsp13:Y217","T4949C,C16887T",,,,,,,,
B.23,,"nsp2:ND267N,nsp15:A217V","ATGA1605A,C20270T",,,,,,,,
B.27,,"nsp2:ND267N,N:E253","ATGA1605A,G29032A",,,,,,,,
B.29,,"RdRp:Y455,S:P715,ORF3a:G251V","C14805T,C23707T,G26144T",ORF3a:G251V,,,,,,,
B.3,,"nsp2:G212D,nsp3:A58T","G1440A,G2891A",,,,,,,,
B.3.1,,"nsp3:A58T,N:S193I","G2891A,G28851T",,,,,,,,
B.30,,"nsp3:N506S,RdRp:Y455","A4236G,C14805T",,,,,,,,
B.31,,"RdRp:V700,N:D22G","C15540T,A28338G",N:D22G,,,,,,,
B.32,,"nsp2:E261G,nsp13:R337","A1587G,T17247C",,,,,,,,
B.34,,"nsp2:Y61,RdRp:Y455,nsp13:R337,ORF3a:G251V","C988T,C14805T,T17247C,G26144T",ORF3a:G251V,,,,,,,
B.35,,"nsp3:N1587S,RdRp:Y455,nsp13:R337","A7479G,C14805T,T17247C",,,,,,,,
B.4,,"nsp2:V198I,N:L139","G1397A,T28688C",,,,,,,,
B.4.4,,"nsp2:V198I,nsp15:A81V,N:L139","G1397A,C19862T,T28688C",,,,,,,,
B.4.5,,"nsp2:P91S,nsp2:V198I","C1076T,G1397A",,,,,,,,
B.4.7,,"nsp4:M33I,nsp14:D345G,N:L139","G8653T,A19073G,T28688C",,,,,,,,
B.43,,"nsp4:H470Y,ORF3a:G251V","C9962T,G26144T",ORF3a:G251V,,,,,,,
B.45,,"nsp2:ND267N,nsp9:L9","ATGA1605A,C12710T",,,,,,,,
B.46,,"nsp8:I156V,S:I1114","A12557G,C24904T",,,,,,,,
B.51,,nsp2:F437L,"T2116A,G29711T",,,,,,,,
B.52,,"nsp2:I367V,nsp3:L1791F","A1904G,C8090T",,,,,,,,
B.57,,"nsp3:Y356,nsp13:V42","C3787T,C16362T",,,,,,,,
B.58,,"nsp13:R337,nsp13:V521","T17247C,A17799G",,,,,,,,
B.6,,"nsp3:T1198K,RdRp:A97V,S:Y789","C6312A,C13730T,C23929T",,,,,,,,
B.6.6,,"nsp3:S1197R,S:Y789","C6310A,C23929T",,,,,,,,
B.60,,"nsp3:A1431V,RdRp:Y455,ORF3a:G251V","C7011T,C14805T,G26144T",ORF3a:G251V,,,,,,,
BA.1.1.1,Omicron,RdRp:Q875R,A16064G,,,,,29.39,62.58,28.39,60.62
BA.1.1.10,Omicron,"nsp2:A555,nsp8:T141M,GFL:V57,S:L981F","C2470T,C12513T,T13195C,C24503T",S:L981F,,,,2728.79,1842.84,1981.77,7764.4
BA.1.1.11,Omicron,"nsp2:G517R,GFL:V57","G2354A,T13195C",,,,,0.0,0.0,1625.55,6335.95
BA.1.1.12,Omicron,nsp3:L75M,C2942A,,,,,36.15,77.54,28.75,61.01
BA.1.1.13,Omicron,"nsp2:A555,S:L981F,ORF3a:T229I","C2470T,C24503T,C26078T",S:L981F,,,,2035.94,3073.98,53.15,109.37
BA.1.1.14,Omicron,RdRp:I223V,A14107G,,,,,46.76,97.07,26.81,56.46
BA.1.1.15,Omicron,"nsp2:A555,nsp6:I189V,GFL:V57,RdRp:G44S,S:T547K,S:N856K,S:L981F","C2470T,A11537G,T13195C,G13570A,C23202A,C24130A,C24503T","S:L981F,S:N856K,S:T547K",,,,0.0,0.0,120.44,269.25
BA.1.1.16,Omicron,"nsp2:A555,S:V11,ORF7a:T39R","C2470T,C21595T,C27509G",,,,,13983.93,10575.43,2650.44,12366.03
BA.1.1.17,Omicron,"nsp2:G285V,nsp2:A555","G1659T,C2470T",,,,,59.08,126.79,0.0,0.0
BA.1.1.18,Omicron,"nsp3:A1736V,GFL:V57","C7926T,T13195C",,,,,42.06,90.73,730.38,2383.56
BA.1.1.2,Omicron,3CLpro:T169S,C10560G,,,,,50.98,113.45,49.87,102.7
BA.1.1.3,Omicron,"nsp3:N621,S:T791I,S:L981F","C4582T,C23934T,C24503T","S:L981F,S:T791I",,,,0.0,0.0,2687.85,11321.79
BA.1.1.4,Omicron,"nsp13:G170S,ORF3a:Y107H","G16744A,T25711C",,,,,0.0,0.0,3229.93,13545.41
BA.1.1.8,Omicron,"nsp2:Q321K,nsp2:A555","C1766A,C2470T",,,,,15424.85,4272.51,0.0,0.0
BA.1.1.9,Omicron,"GFL:L133F,S:R346K","C13421T,G22599A",,S:R346K,,,0.0,0.0,1095.53,8312.53
BA.1.10,Omicron,"GFL:V57,nsp13:Y269C","T13195C,A17042G",nsp13:Y269C,,,,0.0,0.0,51.15,109.79
BA.1.12,Omicron,"S:E309Q,N:R14","G22487C,C28315T",S:E309Q,,,,0.0,0.0,15045.76,13384.33
BA.1.13.1,Omicron,"nsp2:K384N,nsp15:V22L","G1957T,G19684T",,,,,0.0,0.0,0.0,0.0
BA.1.14,Omicron,"nsp9:T34I,S:L981F","C12786T,C24503T",S:L981F,,,,8048.78,7331.52,54.64,112.95
BA.1.14.1,Omicron,"nsp6:A46V,nsp9:T34I,S:L981F","C11109T,C12786T,C24503T",S:L981F,,,,0.0,0.0,944.89,1183.42
BA.1.14.2,Omicron,"nsp2:A336V,nsp3:K38R,nsp3:A889,nsp6:I189V,nsp9:T34I,RdRp:N600,S:T547K,S:N856K,S:L981F","C1812T,A2832G,T5386G,A11537G,C12786T,C15240T,C23202A,C24130A,C24503T","S:L981F,S:N856K,S:T547K",,,,0.0,0.0,0.0,0.0
BA.1.15,Omicron,"3CLpro:L27,N:D343G","T10135C,A29301G",N:D343G,,,,48.88,101.67,28.37,60.45
BA.1.15.1,Omicron,S:I1081V,A24803G,S:I1081V,,,,29.4,63.05,40.7,85.73
BA.1.15.2,Omicron,"3CLpro:L27,S:Q628K,N:D343G","T10135C,C23444A,A29301G","S:Q628K,N:D343G",,,,2982.25,3649.51,0.0,0.0
BA.1.16,Omicron,"nsp3:Y129H,ORF10:N25","T3104C,C29632T",,,,,0.0,0.0,57.05,116.99
BA.1.16.1,Omicron,"nsp4:V402I,ORF3a:K21","G9758A,G25455A",,,,,0.0,0.0,0.0,0.0
BA.1.16.2,Omicron,"nsp3:Y129H,S:N856K,S:L981F,ORF8:I121V,ORF10:N25","T3104C,C24130A,C24503T,A28254G,C29632T","S:L981F,S:N856K",,,,0.0,0.0,0.0,0.0
BA.1.17,Omicron,"nsp3:V1069I,S:L981F","G5924A,C24503T",S:L981F,,,,49.15,102.28,28.36,60.45
BA.1.19,Omicron,"nsp16:L126F,S:L981F","C21034T,C24503T",S:L981F,,,,1455.2,5635.95,136.08,271.12
BA.1.20,Omicron,"nsp7:H36,GFL:V57","C11950T,T13195C",,,,,57.81,118.18,12228.46,12444.03
BA.1.21,Omicron,"GFL:V57,S:L981F,ORF7b:E3*","T13195C,C24503T,G27762T",S:L981F,,,,11756.16,9775.27,55.98,125.62
BA.1.21.1,Omicron,RdRp:L749M,T15685A,,,,,0.0,0.0,28.15,59.6
BA.1.23,Omicron,"nsp3:K38R,nsp3:A889,nsp3:SL1265I,nsp6:LSGF105F,nsp6:I189V,GFL:V57,RdRp:N600,S:A67V,S:GVYY142D,S:E484V,S:T547K,S:A688V,S:N856K,S:L981F,M:D3G","A2832G,T5386G,AGTT6512A,GTTTGTCTGGTTT11283GTTT,A11537G,T13195C,C15240T,C21762T,GGTGTTTATT21986G,A23013T,C23202A,C23625T,C24130A,C24503T,A26530G","S:L981F,S:A67V,S:A688V,S:N856K,S:T547K,M:D3G",S:E484V,,,0.0,0.0,0.0,0.0
BA.1.8,Omicron,"nsp6:A161,S:P809S","C11455T,C23987T",S:P809S,,,,0.0,0.0,27.29,57.77
BA.2,Omicron,"nsp3:T24I,nsp4:L438F,S:LPPA24S,S:V213G,S:E484A,S:Q493R,S:P681H,M:F112,ORF6:R20,ORF6:D61H,ORF6:D61V,ORF6:D61","C2790T,C9866T,TTACCCCCTG21632T,T22200G,A23013C,A23040G,C23604A,C26858T,A27259C,G27382C,A27383T,T27384C","S:P681H,S:V213G","S:Q493R,S:E484A",,,25.12,53.04,26.99,56.81
BA.2.1,Omicron,"nsp9:T35I,S:Q493R","C12789T,A23040G",,S:Q493R,,,124.15,258.73,103.69,203.22
BA.2.10,Omicron,"nsp13:S36P,S:Q493R","T16342C,A23040G",,S:Q493R,,,27.03,57.96,462.32,857.87
BA.2.10.1,Omicron,S:G798D,G23955A,S:G798D,,,,39.86,84.66,40.07,85.77
BA.2.10.2,Omicron,"nsp13:S36P,S:Q493R,E:R61L","T16342C,A23040G,G26426T",,S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.10.3,Omicron,"nsp13:S36P,S:I68T,S:Q493R","T16342C,T21765C,A23040G",S:I68T,S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.10.4,Omicron,"nsp3:P512,S:W64R,S:S494P","G4255A,T21752C,T23042C",S:W64R,S:S494P,,,0.0,0.0,0.0,0.0
BA.2.11,Omicron,"nsp3:S1701P,nsp4:L438F,S:Q493R","T7820C,C9866T,A23040G",,S:Q493R,,,0.0,0.0,822.32,1037.53
BA.2.12,Omicron,"S:Q493R,S:S704L,ORF3a:F8","A23040G,C23673T,C25416T",S:S704L,S:Q493R,,,25.06,52.94,140.34,277.09
BA.2.12.1,Omicron,"nsp6:Y234,RdRp:D523,S:D53,S:S704L","C11674T,T15009C,C21721T,C23673T",S:S704L,,,,25.06,52.95,176.0,400.61
BA.2.12.2,Omicron,"nsp6:Y234,nsp13:D450,S:R357K","C11674T,C17586T,G22632A",,S:R357K,,,0.0,0.0,0.0,0.0
BA.2.13,Omicron,"S:I410,S:L452M,S:S735","C22792T,C22916A,A23767G",,S:L452M,,,107.6,220.08,634.26,897.24
BA.2.13.1,Omicron,"nsp13:L240,S:T941S,N:S78","C16954T,A24383T,C28507T",S:T941S,,,,901.65,1739.32,0.0,0.0
BA.2.14,Omicron,"S:W64L,S:I410","G21753T,C22792T",S:W64L,,,,0.0,0.0,45.02,91.95
BA.2.15,Omicron,"nsp4:T387I,S:W64L,ORF8:H17","C9714T,G21753T,C27944T",S:W64L,,,,0.0,0.0,0.0,0.0
BA.2.16,Omicron,"nsp1:MV85,N:T296I","GTTATGGTT515GTT,C29160T",N:T296I,,,,41.89,90.72,31.99,68.52
BA.2.17,Omicron,"S:Q493R,ORF3a:F8,ORF3a:D173Y","A23040G,C25416T,G25909T",ORF3a:D173Y,S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.18,Omicron,"S:K417T,S:F562","A22812C,C23248T",,S:K417T,,,39.28,85.06,42.44,85.79
BA.2.19,Omicron,"nsp2:T153M,RdRp:Y884,S:Q493R","C1263T,C16092T,A23040G",,S:Q493R,,,0.0,0.0,1826.31,5852.8
BA.2.2,Omicron,"nsp8:T145I,S:I1221T","C12525T,T25224C",S:I1221T,,,,0.0,0.0,1342.26,1691.93
BA.2.20,Omicron,"N:N75,N:D348H","C28498T,G29315C",N:D348H,,,,247.42,464.24,0.0,0.0
BA.2.21,Omicron,"nsp3:G255R,nsp4:D70G","G3482A,A8763G",,,,,6536.19,3591.05,0.0,0.0
BA.2.22,Omicron,"nsp8:Q24H,S:F186S","G12163T,T22119C",S:F186S,,,,851.59,1767.54,4240.19,3560.01
BA.2.23.1,Omicron,"nsp3:S1717L,N:Q39L","C7869T,A28389T",N:Q39L,,,,1794.92,1892.33,5003.0,3216.64
BA.2.25,Omicron,"nsp2:I283V,S:I410","A1652G,C22792T",,,,,0.0,0.0,1017.96,1567.04
BA.2.25.1,Omicron,"nsp2:I283V,ORF3a:V97I","A1652G,G25681A",,,,,0.0,0.0,0.0,0.0
BA.2.26,Omicron,"nsp2:L400F,nsp4:T62I","C2003T,C8739T",,,,,38.96,82.5,0.0,0.0
BA.2.28,Omicron,"nsp3:R1297S,nsp4:T269I,ORF3a:D22G","A6610C,C9360T,A25457G",ORF3a:D22G,,,,0.0,0.0,0.0,0.0
BA.2.29,Omicron,"nsp2:A403T,nsp4:L438F,S:V213G,S:Q493R","G2012A,C9866T,T22200G,A23040G",S:V213G,S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.3,Omicron,"nsp4:A146V,nsp4:L438F,S:V213G,S:Q493R,ORF3a:L140F,ORF6:D61H","C8991T,C9866T,T22200G,A23040G,C25810T,G27382C",S:V213G,S:Q493R,,,185.68,450.13,35.83,74.68
BA.2.3.1,Omicron,"nsp4:A146V,S:Q677E","C8991T,C23591G",S:Q677E,,,,0.0,0.0,2865.82,2158.44
BA.2.3.10,Omicron,"ORF3a:W128C,ORF3a:L140F","G25776T,C25810T",,,,,4773.78,13243.5,0.0,0.0
BA.2.3.11,Omicron,"GFL:T101I,ORF3a:L140F","C13326T,C25810T",,,,,0.0,0.0,145.22,304.42
BA.2.3.12,Omicron,"nsp8:T145I,nsp14:L157F,ORF3a:L140F","C12525T,C18508T,C25810T",,,,,0.0,0.0,0.0,0.0
BA.2.3.13,Omicron,"nsp4:A146V,nsp4:L438F,3CLpro:L75F,nsp14:F426,S:V213G,S:Q493R,ORF3a:L140F,ORF6:D61V","C8991T,C9866T,C10277T,C19317T,T22200G,A23040G,C25810T,A27383T","3CLpro:L75F,S:V213G",S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.3.14,Omicron,"nsp4:A146V,nsp4:D459A,ORF3a:L140F","C8991T,A9930C,C25810T",,,,,1751.56,4400.65,0.0,0.0
BA.2.3.15,Omicron,"nsp14:E92,S:D215E","G18315A,T22207G",S:D215E,,,,0.0,0.0,353.47,648.93
BA.2.3.17,Omicron,"nsp2:K618N,nsp4:A146V,RdRp:A97V","G2659T,C8991T,C13730T",,,,,201.41,399.88,8264.4,5391.77
BA.2.3.18,Omicron,"nsp13:R155C,nsp13:I512S","C16699T,T17771G",nsp13:I512S,,,,0.0,0.0,0.0,0.0
BA.2.3.20,Omicron,"nsp3:I896T,N:R93","T5406C,C28550A",,,,,142.09,311.58,67.93,174.25
BA.2.3.22,Omicron,"S:F490V,ORF6:I14M","T23030G,A27243G",ORF6:I14M,S:F490V,,,0.0,0.0,0.0,0.0
BA.2.3.4,Omicron,"nsp3:C1627,GFL:L133,S:N641S","C7600T,C13423T,A23484G",S:N641S,,,,4881.83,3918.85,0.0,0.0
BA.2.3.5,Omicron,"nsp2:T44I,nsp4:A146V,ORF3a:L140F","C936T,C8991T,C25810T",,,,,1355.3,1820.44,0.0,0.0
BA.2.3.6,Omicron,"nsp3:D757,S:S255F,ORF3a:L140F","C4990T,C22326T,C25810T",S:S255F,,,,1913.58,1947.47,0.0,0.0
BA.2.3.7,Omicron,"S:K97E,N:M322I","A21851G,G29239A",S:K97E,,,,0.0,0.0,0.0,0.0
BA.2.3.9,Omicron,"nsp4:A146V,ORF3a:L140F,N:G238V","C8991T,C25810T,G28986T",N:G238V,,,,0.0,0.0,1653.52,4691.78
BA.2.30,Omicron,"nsp3:T24I,nsp3:G489S,nsp3:A534,nsp4:L264F,nsp4:V290,nsp4:T327I,nsp4:L438F,3CLpro:R131,nsp6:SGF106,RdRp:L758,nsp13:R392C,nsp15:T112I,nsp15:E145,S:T19I,S:LPPA24S,S:V213G,S:T376A,S:R408S,S:E484A,S:Q493R,S:H655Y,S:P681H,S:D796Y,S:Q954H,S:N969K,ORF3a:T223I,ORF3a:E239D,E:T9I,M:F112,ORF6:R20,ORF6:D61H,ORF6:D61V,ORF6:D61,ORF7b:L18,N:GERS30G,N:S413R","C2790T,G4184A,C4321T,C9344T,A9424G,C9534T,C9866T,G10447A,GTCTGGTTTT11287G,C15714T,C17410T,C19955T,A20055G,C21618T,TTACCCCCTG21632T,T22200G,A22688G,A22786C,A23013C,A23040G,C23525T,C23604A,G23948T,A24424T,T24469A,C26060T,G26109T,C26270T,C26858T,A27259C,G27382C,A27383T,T27384C,C27807T,GAGAACGCAG28362G,A29510C","S:Q954H,S:T19I,E:T9I,S:H655Y,S:P681H,S:N969K,S:D796Y,N:S413R,ORF3a:E239D,S:T376A,nsp13:R392C,S:V213G","S:Q493R,S:E484A,S:R408S",,,0.0,0.0,0.0,0.0
BA.2.31,Omicron,"nsp4:L438F,nsp7:D77N,S:Q493R","C9866T,G12071A,A23040G",,S:Q493R,,,226.88,435.19,292.92,1041.16
BA.2.31.1,Omicron,"nsp7:D77N,S:I68T","G12071A,T21765C",S:I68T,,,,0.0,0.0,0.0,0.0
BA.2.32,Omicron,"S:N354,S:Q493R,ORF7a:A66S","C22624T,A23040G,G27589T",,S:Q493R,,,629.74,3124.02,0.0,0.0
BA.2.35,Omicron,"nsp3:P1159,M:G202,N:L221F","C6196T,C27128T,G28936T",N:L221F,,,,0.0,0.0,1361.0,1578.23
BA.2.37,Omicron,nsp3:R603K,G4527A,,,,,28.65,60.88,34.33,73.72
BA.2.38,Omicron,"S:K417T,S:Q493R,ORF3a:F8","A22812C,A23040G,C25416T",,"S:Q493R,S:K417T",,,92.88,211.43,26.16,55.23
BA.2.38.1,Omicron,"S:S221,S:S247N,S:Y248S","G22225A,G22302A,A22305C","S:S247N,S:Y248S",,,,0.0,0.0,0.0,0.0
BA.2.38.2,Omicron,"nsp3:D1478,nsp6:N156S","T7153C,A11439G",,,,,0.0,0.0,0.0,0.0
BA.2.39,Omicron,"nsp4:A446,RdRp:E744D","T9892C,G15672T",,,,,0.0,0.0,443.83,1085.85
BA.2.4,Omicron,ORF6:M58K,T27374A,,,,,0.0,0.0,0.0,0.0
BA.2.40.1,Omicron,"nsp15:Q19H,nsp16:R216","G19677T,C21306T",,,,,37.07,78.37,930.17,4611.32
BA.2.41,Omicron,S:T1231S,A25253T,,,,,34.91,74.55,46.28,96.83
BA.2.42,Omicron,"S:I68T,N:E378D","T21765C,A29407T","S:I68T,N:E378D",,,,0.0,0.0,0.0,0.0
BA.2.43,Omicron,"nsp2:Q588R,S:S371Y","A2568G,C22674A",,S:S371Y,,,0.0,0.0,0.0,0.0
BA.2.44,Omicron,"nsp14:D324,S:S371Y,S:S735","C19011T,C22674A,A23767G",,S:S371Y,,,0.0,0.0,472.28,710.88
BA.2.45,Omicron,"nsp4:I292,S:I410,S:Y449H,S:Q493R","C9430T,C22792T,T22907C,A23040G",,"S:Q493R,S:Y449H",,,0.0,0.0,0.0,0.0
BA.2.46,Omicron,"nsp13:T549,S:D1153Y,N:K127","C17883T,G25019T,A28654G",S:D1153Y,,,,0.0,0.0,0.0,0.0
BA.2.47,Omicron,"nsp2:L71F,S:Y248H","G1018T,T22304C",S:Y248H,,,,387.69,631.15,316.16,776.75
BA.2.48,Omicron,"RdRp:V844,nsp13:V181","A15972G,C16779T",,,,,118.35,241.63,330.31,1113.96
BA.2.49,Omicron,N:D377V,A29403T,N:D377V,,,,57.1,120.15,40.88,87.07
BA.2.50,Omicron,"nsp3:D10,RdRp:D60,S:L212S","C2749T,C13620T,T22197C",S:L212S,,,,0.0,0.0,944.5,2285.27
BA.2.52,Omicron,"nsp2:C475R,S:I410,S:Q493R","T2228C,C22792T,A23040G",,S:Q493R,,,0.0,0.0,477.05,1085.48
BA.2.53,Omicron,"S:C1248,N:T135I","T25306C,C28677T",N:T135I,,,,0.0,0.0,962.69,2193.62
BA.2.54,Omicron,"S:Y248S,S:E1202Q","A22305C,G25166C","S:E1202Q,S:Y248S",,,,0.0,0.0,239.62,548.14
BA.2.55,Omicron,"S:I68T,S:T941S","T21765C,A24383T","S:T941S,S:I68T",,,,0.0,0.0,0.0,0.0
BA.2.59,Omicron,"S:D1153Y,N:D22G","G25019T,A28338G","S:D1153Y,N:D22G",,,,0.0,0.0,0.0,0.0
BA.2.6,Omicron,"S:I410,ORF3a:D27H","C22792T,G25471C",ORF3a:D27H,,,,884.06,2212.25,74.55,169.52
BA.2.60,Omicron,"nsp2:T371S,S:V1129I","A1916T,G24947A",,,,,0.0,0.0,0.0,0.0
BA.2.61,Omicron,"S:W64R,S:E1202","T21752A,A25168G",S:W64R,,,,0.0,0.0,0.0,0.0
BA.2.63,Omicron,"nsp3:S126L,nsp14:R212K,S:Q493R","C3096T,G18674A,A23040G",,S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.64,Omicron,"nsp3:I414,nsp6:L98F","C3961T,G11266T",,,,,0.0,0.0,0.0,0.0
BA.2.66,Omicron,"nsp2:N133K,nsp3:G334D","C1204A,G3720A",,,,,0.0,0.0,0.0,0.0
BA.2.67,Omicron,"nsp3:V1768,GFL:D64E","T8023C,T13216G",,,,,0.0,0.0,137.71,280.18
BA.2.68,Omicron,"GFL:G34R,S:Q493R,ORF3a:F8","G13124A,A23040G,C25416T",,S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.7,Omicron,"nsp3:T1306I,S:I410","C6636T,C22792T",,,,,264.69,516.72,38.26,79.13
BA.2.70,Omicron,"nsp2:I21V,nsp4:A92T","A866G,G8828A",,,,,0.0,0.0,318.92,1042.47
BA.2.72,Omicron,"S:L212S,S:I410,S:H1101","T22197C,C22792T,C24865T",S:L212S,,,,23.99,50.57,491.46,1158.7
BA.2.73,Omicron,"nsp3:P1469S,S:G257S,S:Q493R","C7124T,G22331A,A23040G",S:G257S,S:Q493R,,,34.09,70.86,0.0,0.0
BA.2.74,Omicron,"nsp1:V106,RdRp:V495,S:L452M","C583T,C14925T,C22916A",,S:L452M,,,0.0,0.0,1470.89,7810.68
BA.2.75.2,Omicron,"nsp3:L825,S:D1199N","C5192T,G25157A",S:D1199N,,,,145.41,451.21,40.23,81.29
BA.2.76,Omicron,"S:Y248N,S:Q493R,ORF3a:F8","T22304A,A23040G,C25416T",S:Y248N,S:Q493R,,,1150.77,1887.63,25.94,55.58
BA.2.77,Omicron,"RdRp:D377,ORF3a:G100V,M:S4F","C14571T,G25691T,C26533T",M:S4F,,,,0.0,0.0,0.0,0.0
BA.2.79,Omicron,"nsp13:P53S,nsp13:Y217,S:Y248S,S:Q493R","C16393T,C16887T,A22305C,A23040G","nsp13:P53S,S:Y248S",S:Q493R,,,0.0,0.0,0.0,0.0
BA.2.8,Omicron,"nsp16:D130,ORF3a:A31T","T21048C,G25483A",ORF3a:A31T,,,,0.0,0.0,546.81,929.02
BA.2.80,Omicron,"nsp3:N22H,nsp3:R586C","A2783C,C4475T",,,,,0.0,0.0,0.0,0.0
BA.2.81,Omicron,"RdRp:I244T,nsp13:F422","T14171C,C17502T",,,,,0.0,0.0,0.0,0.0
BA.2.82,Omicron,"nsp8:A63T,GFL:T58I","G12278A,C13197T",,,,,0.0,0.0,0.0,0.0
BA.2.85,Omicron,"S:I651V,N:F53","A23513G,C28432T",S:I651V,,,,0.0,0.0,0.0,0.0
BA.2.86.2,BA.2.86.X,"nsp2:A31D,S:L216F,S:A570V,M:A104V,ORF7a:E22D,N:Q229K","C897A,C22208T,C23271T,C26833T,G27459T,C28958A","S:L216F,N:Q229K,S:A570V",,,,0.0,0.0,23.25,43.9
BA.2.86.3,BA.2.86.X,"nsp2:A385,nsp9:A30","C1960T,T12775C",,,,,0.0,0.0,14.0,21.44
BA.2.86.4,BA.2.86.X,"nsp2:A31D,nsp4:I27V,nsp7:V33A,S:A222V,S:S939F","C897A,A8633G,T11940C,C22227T,C24378T","S:A222V,S:S939F",,,,0.0,0.0,0.0,0.0
BA.2.86.5,BA.2.86.X,"nsp3:D1122,S:T572","T6085C,T23278C",,,,,0.0,0.0,0.0,0.0
BA.2.9.1,Omicron,"nsp3:L297,nsp3:D464","T3610C,T4111C",,,,,0.0,0.0,2828.68,2388.04
BA.2.9.2,Omicron,"nsp3:T1189I,S:I410,ORF3a:H78Y","C6285T,C22792T,C25624T",nsp3:T1189I,,,,8772.91,6489.93,0.0,0.0
BA.2.9.3,Omicron,"S:W64R,ORF3a:H78Y","T21752C,C25624T",S:W64R,,,,538.12,1192.77,25.61,55.05
BA.2.9.4,Omicron,"S:L117,ORF3a:H78Y,ORF7a:L5F","C21911T,C25624T,C27406T",,,,,0.0,0.0,0.0,0.0
BA.2.9.5,Omicron,"nsp3:V575A,S:I410,ORF3a:H78Y","T4443C,C22792T,C25624T",,,,,0.0,0.0,506.75,1283.21
BA.2.9.6,Omicron,"nsp2:V447F,S:I410,S:L452M","G2144T,C22792T,C22916A",,S:L452M,,,0.0,0.0,547.9,2524.68
BA.2.9.7,Omicron,"nsp3:H295Y,S:S730F","C3602T,C23751T",S:S730F,,,,1641.97,3164.57,181.01,412.65
BA.3,Omicron,"nsp2:N9,nsp6:A88V,S:A67V","C832T,C11235T,C21762T",S:A67V,,,,0.0,0.0,861.21,1565.73
BA.3.1,Omicron,"nsp2:N9,nsp6:A88V,N:F346","C832T,C11235T,C29311T",,,,,0.0,0.0,778.02,2397.82
BA.4,Omicron,"ORF7b:L11F,N:P151S","G27788T,C28724T",N:P151S,,,,30.03,65.1,26.62,56.34
BA.4.1,Omicron,"S:V3G,N:P151S","T21570G,C28724T",N:P151S,,,,73.3,149.77,24.19,51.75
BA.4.1.10,Omicron,"ORF3a:G49V,N:P151S,N:P302","G25538T,C28724T,G29179A",N:P151S,,,,0.0,0.0,310.58,643.9
BA.4.1.11,Omicron,"RdRp:D846,ORF8:Q18L","T15978C,A27946T",ORF8:Q18L,,,,0.0,0.0,1010.08,1322.17
BA.4.1.2,Omicron,"nsp3:P153S,RdRp:P323S,ORF7a:P84L","C3176T,C14407T,C27644T",,,,,0.0,0.0,0.0,0.0
BA.4.1.3,Omicron,"nsp2:R544G,nsp6:P262,S:V3G,N:T54","A2435G,C11758T,T21570G,C28435T",,,,,0.0,0.0,0.0,0.0
BA.4.1.4,Omicron,"S:V3G,S:C1235F","T21570G,G25266T",,,,,0.0,0.0,0.0,0.0
BA.4.1.5,Omicron,"nsp16:T35I,S:V3G,ORF7b:L11F,N:P151S","C20762T,T21570G,G27788T,C28724T",N:P151S,,,,0.0,0.0,0.0,0.0
BA.4.1.6,Omicron,"GFL:T102I,S:V3G","C13329T,T21570G",,,,,35.35,71.07,0.0,0.0
BA.4.1.8,Omicron,"nsp14:H188,N:R149","T18603C,C28720T",,,,,339.74,599.19,115.05,204.79
BA.4.2,Omicron,"nsp3:H818Q,GFL:A18","C5173A,T13078C",,,,,90.43,200.93,191.65,339.43
BA.4.3,Omicron,"nsp1:KSF141,nsp2:I216,nsp16:P236L,S:N658S,ORF7b:L11F,N:P151S","AAAGTCATTT685A,T1453C,C21365T,A23535G,G27788T,C28724T","N:P151S,S:N658S",,,,0.0,0.0,0.0,0.0
BA.4.4,Omicron,"S:N658S,ORF3a:L106F","A23535G,C25708T",S:N658S,,,,89.41,177.87,95.84,190.52
BA.4.5,Omicron,"S:G181E,S:Q1201L","G22104A,A25164T","S:Q1201L,S:G181E",,,,0.0,0.0,0.0,0.0
BA.4.6,Omicron,"nsp3:S1807,S:N658S","C8140T,A23535G",S:N658S,,,,30.97,67.37,22.9,48.77
BA.4.6.1,Omicron,"RdRp:L387,S:W152L,S:N658S,N:P151S","C14599T,G22017T,A23535G,C28724T","N:P151S,S:N658S,S:W152L",,,,0.0,0.0,141.06,357.38
BA.4.6.2,Omicron,"nsp3:D505G,nsp3:S1807,ORF7b:L11F,N:P151S","A4233G,C8140T,G27788T,C28724T",N:P151S,,,,124.83,303.63,0.0,0.0
BA.4.6.3,Omicron,"nsp3:G145C,S:N658S","G3152T,A23535G",S:N658S,,,,0.0,0.0,553.68,554.34
BA.4.6.5,Omicron,"S:N658S,N:Q39","A23535G,A28390G",S:N658S,,,,152.81,389.98,207.22,310.01
BA.4.7,Omicron,"S:N658S,M:L56","A23535G,G26690T",S:N658S,,,,22.69,47.96,251.33,517.07
BA.5.1,Omicron,"nsp8:E23,ORF7a:C15,ORF10:L37F","G12160A,T27438C,C29666T",,,,,60.56,131.5,28.37,59.96
BA.5.1.1,Omicron,ORF3a:L94I,C25672A,,,,,28.54,61.14,30.53,64.3
BA.5.1.11,Omicron,"nsp3:D1219,nsp3:I1550T,ORF7a:C15","T6376C,T7368C,T27438C",,,,,0.0,0.0,8740.74,7198.96
BA.5.1.15,Omicron,"3CLpro:H246Y,ORF7a:C15","C10790T,T27438C",3CLpro:H246Y,,,,217.15,575.73,606.56,1026.44
BA.5.1.16,Omicron,"nsp3:M84V,ORF7a:G26D","A2969G,G27470A",,,,,0.0,0.0,0.0,0.0
BA.5.1.17,Omicron,"ORF3a:P42L,ORF7a:C15","C25517T,T27438C",,,,,0.0,0.0,57.33,136.46
BA.5.1.18,Omicron,ORF7a:L30H,T27482A,,,,,22.95,48.45,58.76,119.93
BA.5.1.19,Omicron,"RdRp:G671C,ORF10:C19","G15451T,C29614T",,,,,0.0,0.0,52.75,107.73
BA.5.1.2,Omicron,"ORF6:V5I,ORF7a:C15","G27214A,T27438C",,,,,176.61,456.78,170.8,360.94
BA.5.1.21,Omicron,"3CLpro:N151,nsp14:D379N,N:I337","C10507T,G19174A,C29284T",,,,,231.5,626.58,174.4,364.71
BA.5.1.22,Omicron,"nsp13:S350L,ORF7a:C15","C17285T,T27438C",,,,,186.49,483.51,94.49,184.13
BA.5.1.23,Omicron,"nsp2:S122F,ORF7a:C15","C1170T,T27438C",,,,,221.26,430.69,23.78,50.46
BA.5.1.24,Omicron,"nsp13:V348L,ORF7a:C15,ORF10:L37F","G17278T,T27438C,C29666T",,,,,919.43,1322.27,191.56,401.27
BA.5.1.25,Omicron,"nsp6:N174,ORF7b:H42Y","C11494T,C27879T",,,,,217.57,428.75,250.6,499.44
BA.5.1.26,Omicron,"ORF3a:R68G,ORF10:L37F","A25594G,C29666T",,,,,0.0,0.0,95.0,215.35
BA.5.1.27,Omicron,nsp9:L88,A12949G,,,,,24.24,51.99,41.71,88.14
BA.5.1.28,Omicron,"nsp14:K147,ORF7a:C15","A18480G,T27438C",,,,,0.0,0.0,104.15,209.17
BA.5.1.3,Omicron,"S:V289I,ORF7a:C15","G22427A,T27438C",S:V289I,,,,234.25,633.76,247.78,514.24
BA.5.1.30,Omicron,"nsp13:C29,ORF6:D6G","C16323T,A27218G",,,,,212.28,557.0,169.39,354.16
BA.5.1.31,Omicron,"nsp3:P874S,nsp13:V247I,N:T54","C5339T,G16975A,C28435T",nsp3:P874S,,,,0.0,0.0,0.0,0.0
BA.5.1.32,Omicron,"nsp13:Y298,nsp14:D41N,N:A273S","C17130T,G18160A,G29090T",N:A273S,,,,0.0,0.0,0.0,0.0
BA.5.1.33,Omicron,"S:V1264L,ORF7a:C15","G25352T,T27438C",S:V1264L,,,,102.23,236.96,27.62,57.66
BA.5.1.34,Omicron,"nsp2:P446L,nsp6:A186,S:P1162S","C2142T,C11530T,C25046T",S:P1162S,,,,0.0,0.0,84.11,183.17
BA.5.1.35,Omicron,"nsp3:I707M,ORF7a:C15","A4840G,T27438C",,,,,348.22,440.0,256.59,750.95
BA.5.1.36,Omicron,"RdRp:R181,N:G18C","T13983C,G28325T",N:G18C,,,,0.0,0.0,0.0,0.0
BA.5.1.37,Omicron,"nsp13:V495,S:Y248N,ORF7a:C15,ORF10:C19","G17721T,T22304A,T27438C,C29614T",S:Y248N,,,,0.0,0.0,0.0,0.0
BA.5.1.38,Omicron,"nsp16:A192T,S:G1046","G21232A,C24700T",,,,,0.0,0.0,0.0,0.0
BA.5.1.4,Omicron,"nsp3:S692C,nsp14:G88","C4794G,C18303A",,,,,0.0,0.0,41.43,87.48
BA.5.1.5,Omicron,"nsp13:Y64,S:P1263Q","C16428T,C25350A",S:P1263Q,,,,138.27,328.77,95.26,231.95
BA.5.1.6,Omicron,"nsp3:Y978,ORF7a:C15","T5653C,T27438C",,,,,195.35,512.2,489.46,930.72
BA.5.1.7,Omicron,"nsp13:C19,nsp15:T281I","C16293T,C20462T",,,,,251.58,653.13,0.0,0.0
BA.5.1.8,Omicron,"nsp9:T21I,nsp16:T151I,ORF7a:C15","C12747T,C21110T,T27438C",,,,,0.0,0.0,0.0,0.0
BA.5.1.9,Omicron,"nsp3:H834,ORF6:D6G","C5221T,A27218G",,,,,0.0,0.0,11988.47,2601.49
BA.5.10,Omicron,"nsp2:R27C,E:S50G","C884T,A26392G",,,,,83.3,187.68,101.81,204.09
BA.5.10.1,Omicron,"E:S50G,N:P383","A26392G,G29422T",,,,,23.4,50.27,101.35,202.83
BA.5.11,Omicron,"nsp1:GHVMVE82E,ORF7a:EVQE92","TGGTCATGTTATGGTTG508TG,C27389T,AAGTTCAAGAA27668A",,,,,47.05,100.12,32.31,69.92
BA.5.12,Omicron,"nsp2:A411S,RdRp:F881","G2036T,T16083C",,,,,0.0,0.0,0.0,0.0
BA.5.2,Omicron,"nsp8:Q73,N:G19","G12310A,A28330G",,,,,25.32,53.93,26.84,58.7
BA.5.2.1,Omicron,"nsp2:L274,M:T172,N:G19","C1627T,A27038G,A28330G",,,,,45.25,93.33,27.68,58.78
BA.5.2.10,Omicron,"nsp3:M265I,N:A125T","G3514T,G28646A",N:A125T,,,,0.0,0.0,0.0,0.0
BA.5.2.12,Omicron,"nsp8:Q73,nsp13:T127N,ORF7a:Y40,N:T362I","G12310A,C16616A,C27513T,C29358T",N:T362I,,,,0.0,0.0,877.97,1193.24
BA.5.2.13,Omicron,"GFL:I38V,GFL:H80","A13136G,C13264T",,,,,179.55,302.67,97.01,222.9
BA.5.2.14,Omicron,"nsp13:T127,S:W64L","T16617C,G21753T",S:W64L,,,,0.0,0.0,0.0,0.0
BA.5.2.19,Omicron,"nsp13:T127N,ORF3a:T14I","C16616A,C25433T",,,,,187.13,462.49,306.59,398.62
BA.5.2.2,Omicron,"nsp13:T127N,nsp15:G246S","C16616A,G20356A",,,,,328.97,972.44,223.38,499.02
BA.5.2.21,Omicron,"nsp3:N855,nsp13:T127N","C5284T,C16616A",,,,,25.16,53.55,31.77,66.37
BA.5.2.22,Omicron,"nsp3:T204I,nsp8:Q73","C3330T,G12310A",,,,,236.23,588.91,169.15,332.12
BA.5.2.23,Omicron,"nsp3:T619,nsp8:Q73,S:Y145H,S:S255F","A4576T,G12310A,T21995C,C22326T","S:S255F,S:Y145H",,,,235.15,379.84,0.0,0.0
BA.5.2.26,Omicron,ORF3a:L108V,C25714G,,,,,28.88,61.72,24.87,53.66
BA.5.2.27,Omicron,"nsp3:I1514V,nsp13:T127N","A7259G,C16616A",,,,,295.34,529.13,361.72,612.1
BA.5.2.28,Omicron,"nsp3:T619I,nsp8:Q73","C4575T,G12310A",,,,,282.7,496.5,277.2,491.62
BA.5.2.29,Omicron,"nsp3:L1167,RdRp:T26I","T6218C,C13517T",,,,,0.0,0.0,5294.49,2990.62
BA.5.2.3,Omicron,"nsp1:K120N,nsp2:K500","G625T,G2305A",,,,,42.97,88.65,108.04,233.16
BA.5.2.30,Omicron,"nsp4:F17,nsp13:T127N,S:G446D","C8605T,C16616A,G22899A",,S:G446D,,,0.0,0.0,175.93,271.11
BA.5.2.31,Omicron,"nsp13:T127N,S:L84I","C16616A,C21812A",S:L84I,,,,257.61,350.48,0.0,0.0
BA.5.2.32,Omicron,"nsp13:T127N,ORF6:Y31,ORF8:T87I","C16616A,C27294T,C28153T",,,,,0.0,0.0,0.0,0.0
BA.5.2.34,Omicron,"nsp14:V14L,S:Q675","G18079T,G23587A",,,,,35.44,71.64,138.46,303.72
BA.5.2.35,Omicron,"nsp13:T127,N:A50","T16617C,G28423C",,,,,134.96,299.34,217.11,490.2
BA.5.2.37,Omicron,"nsp3:L1408,nsp8:Q73,nsp13:T127N,S:Y145H,ORF7a:Y40","G6943T,G12310A,C16616A,T21995C,C27513T",S:Y145H,,,,0.0,0.0,0.0,0.0
BA.5.2.39,Omicron,nsp9:L97,A12976T,,,,,0.0,0.0,0.0,0.0
BA.5.2.41,Omicron,"nsp4:S34F,S:K444R,M:L164","C8655T,A22893G,C27012T",,S:K444R,,,0.0,0.0,0.0,0.0
BA.5.2.43,Omicron,"nsp3:A861V,S:G446D","C5301T,G22899A",,S:G446D,,,0.0,0.0,0.0,0.0
BA.5.2.44,Omicron,"nsp3:L1746F,nsp13:T127N","C7955T,C16616A",,,,,0.0,0.0,0.0,0.0
BA.5.2.47,Omicron,"nsp8:Q73,nsp8:D175,S:V1061","G12310A,C12616T,C24745T",,,,,326.1,1309.99,225.68,344.81
BA.5.2.48,Omicron,"nsp4:F24,nsp13:Y324","C8626T,T17208C",,,,,0.0,0.0,524.3,2220.61
BA.5.2.49,Omicron,"RdRp:K411,nsp13:S74P","A14673G,T16456C",nsp13:S74P,,,,0.0,0.0,0.0,0.0
BA.5.2.51,Omicron,"nsp14:P203L,S:K444R,N:F274","C18647T,A22893G,C29095T",,S:K444R,,,0.0,0.0,0.0,0.0
BA.5.2.53,Omicron,"nsp13:A564,S:A653V","T17928C,C23520T",S:A653V,,,,339.23,532.31,0.0,0.0
BA.5.2.54,Omicron,"nsp6:L16,nsp16:P62,N:R276","C11020T,C20844T,A29101G",,,,,0.0,0.0,0.0,0.0
BA.5.2.55,Omicron,"nsp3:T943,nsp13:T127N","C5548A,C16616A",,,,,0.0,0.0,0.0,0.0
BA.5.2.58,Omicron,"nsp6:I169,nsp7:T81,S:R346S","C11479T,C12085T,A22600T",,S:R346S,,,0.0,0.0,1079.75,941.88
BA.5.2.59,Omicron,"3CLpro:N28,nsp13:T127N,S:V1264L","C10138T,C16616A,G25352T",S:V1264L,,,,136.51,253.33,0.0,0.0
BA.5.2.60,Omicron,"nsp6:K263R,nsp14:P203L","A11760G,C18647T",,,,,0.0,0.0,0.0,0.0
BA.5.2.61,Omicron,"nsp13:T127N,nsp15:Q19L","C16616A,A19676T",,,,,0.0,0.0,0.0,0.0
BA.5.2.63,Omicron,"nsp2:K534,nsp2:A596V,ORF6:Y31C","G2407A,C2592T,A27293G",,,,,0.0,0.0,0.0,0.0
BA.5.2.7,Omicron,"nsp2:M418T,nsp13:C574","T2058C,C17958T",,,,,37.68,77.07,45.46,92.32
BA.5.2.8,Omicron,"nsp4:L106F,nsp14:N422","G8872T,T19305C",nsp4:L106F,,,,305.41,839.91,260.33,461.77
BA.5.2.9,Omicron,"3CLpro:R105,RdRp:Y521C","C10369T,A15002G",,,,,22.88,48.67,21.71,45.66
BA.5.3.2,Omicron,"nsp1:R119H,nsp2:Q376K,nsp6:F34","G621A,C1931A,C11074T",,,,,0.0,0.0,903.69,1738.16
BA.5.3.3,Omicron,"nsp1:GHVMVE82E,nsp3:S1375F","TGGTCATGTTATGGTTG508TG,C6843T",nsp3:S1375F,,,,47.28,100.78,31.11,66.74
BA.5.3.4,Omicron,"nsp2:Q376K,nsp16:M20I","C1931A,G20718T",,,,,0.0,0.0,271.87,862.15
BA.5.3.5,Omicron,"nsp1:GHVMVE82E,nsp2:Q376K,GFL:Y76","TGGTCATGTTATGGTTG508TG,C1931A,C13252T",,,,,161.65,478.89,20.2,42.0
BA.5.5.1,Omicron,"S:T76I,ORF8:V62L","C21789T,G28077T","ORF8:V62L,S:T76I",,,,22.2,46.59,42.37,88.94
BA.5.5.2,Omicron,"S:T76I,S:V1068","C21789T,C24766T",S:T76I,,,,22.91,48.55,0.0,0.0
BA.5.5.3,Omicron,"RdRp:P323R,S:T76I","C14408G,C21789T",S:T76I,,,,908.74,1263.65,0.0,0.0
BA.5.6,Omicron,nsp14:N306,T18957C,,,,,25.61,55.01,29.04,61.46
BA.5.6.1,Omicron,"nsp3:D729,nsp13:A389V,nsp14:N306,nsp14:M315I,ORF10:Y14H","T4906C,C17402T,T18957C,G18984T,T29597C",,,,,0.0,0.0,0.0,0.0
BA.5.6.2,Omicron,"nsp4:F17,nsp13:A389V,nsp14:N306","C8605T,C17402T,T18957C",,,,,79.84,183.63,82.99,186.61
BA.5.6.4,Omicron,"nsp3:D729,nsp13:A389V,nsp14:N306,nsp14:M315I,S:R346G","T4906C,C17402T,T18957C,G18984T,A22598G",,S:R346G,,,0.0,0.0,0.0,0.0
BA.5.7,Omicron,"nsp1:E91K,nsp3:M1278L","G536A,A6551C",,,,,0.0,0.0,0.0,0.0
BA.5.8,Omicron,"S:P1162L,N:E253","C25047T,G29032A",S:P1162L,,,,470.14,1488.68,164.97,458.74
BA.5.9,Omicron,"nsp2:H255,nsp14:S255","T1570C,C18804T",,,,,135.74,261.6,92.5,193.47
BB.2,Mu,"nsp4:T189I,ORF8:T11K","C9120T,C27925A",,,,,339.67,786.63,6635.31,15473.77
BC.1,Omicron,"RdRp:Q875R,S:I233V","A16064G,A22259G",S:I233V,,,,0.0,0.0,11086.49,7868.08
BD.1,Omicron,"nsp3:V1069I,S:Q628K","G5924A,C23444A",S:Q628K,,,,0.0,0.0,60.68,122.71
BE.1.1.2,Omicron,"nsp3:F1327,N:F53","T6700C,C28432T",,,,,281.85,739.35,127.51,264.34
BE.1.2.1,Omicron,nsp2:F498L,C2299A,,,,,27.23,57.63,0.0,0.0
BE.1.3,Omicron,"S:M153I,S:E1258Q,N:P151L","G22021T,G25334C,C28725T","S:E1258Q,S:M153I,N:P151L",,,,0.0,0.0,815.11,3145.25
BE.1.4,Omicron,"nsp1:E37,nsp14:V263I","G376A,G18826A",,,,,221.46,433.56,93.12,202.63
BE.1.4.1,Omicron,"nsp14:V263I,S:A701V,ORF3a:S74","G18826A,C23664T,C25614T",S:A701V,,,,915.56,1297.72,0.0,0.0
BE.1.4.2,Omicron,"3CLpro:I78T,nsp14:V263I,ORF3a:S74","T10287C,G18826A,C25614T",3CLpro:I78T,,,,191.59,322.88,0.0,0.0
BE.1.4.3,Omicron,"3CLpro:V18,RdRp:V231","A10108G,T14133C",,,,,0.0,0.0,0.0,0.0
BE.1.4.4,Omicron,"nsp1:E37,nsp14:V263I,S:L176F","G376A,G18826A,C22088T",S:L176F,,,,0.0,0.0,0.0,0.0
BE.10,Omicron,"nsp9:D78,RdRp:H309","C12919T,T14367C",,,,,125.43,260.53,0.0,0.0
BE.11,Omicron,"nsp3:D110,N:E136D,N:N140","T3049C,G28681T,T28693C",N:E136D,,,,0.0,0.0,363.21,1091.07
BE.12,Omicron,"3CLpro:A260,N:T362","C10834T,A29359G",,,,,0.0,0.0,302.17,463.07
BE.13,Omicron,"nsp3:P153S,ORF3a:M260V","C3176T,A26170G",ORF3a:M260V,,,,0.0,0.0,0.0,0.0
BE.2,Omicron,"nsp3:T64I,3CLpro:L115,GFL:D106","C2910T,A10399G,C13342T",,,,,64.5,130.6,525.33,973.51
BE.3,Omicron,"nsp13:Y324C,nsp13:V356","A17207G,C17304T",nsp13:Y324C,,,,75.39,166.13,823.81,881.53
BE.4,Omicron,"3CLpro:T45N,GFL:D106","C10188A,C13342T",3CLpro:T45N,,,,66.66,135.37,27.68,59.94
BE.4.1,Omicron,"nsp3:T350I,GFL:D106","C3768T,C13342T",,,,,88.1,168.36,77.77,154.03
BE.4.1.1,Omicron,"GFL:D106,S:P209L,S:R682","C13342T,C22188T,G23608T",S:P209L,,,,85.63,227.19,155.59,345.38
BE.4.2,Omicron,"S:R682,N:G60","G23608T,C28453T",,,,,19.71,41.74,0.0,0.0
BE.5,Omicron,"GFL:D106,S:P1162L","C13342T,C25047T",S:P1162L,,,,906.02,3604.62,1681.18,2661.13
BE.6,Omicron,"S:R346S,S:N354","A22600T,C22624T",,S:R346S,,,0.0,0.0,0.0,0.0
BE.8,Omicron,"RdRp:T246,S:I312,ORF3a:P240S","C14178T,C22498T,C26110T",ORF3a:P240S,,,,0.0,0.0,0.0,0.0
BE.9,Omicron,"nsp1:MV85,nsp2:Q376K,S:K444T,N:E136D,N:N140","GTTATGGTT515GTT,C1931A,A22893C,G28681T,T28693C",N:E136D,S:K444T,,,94.71,200.83,118.39,239.95
BF.1,Omicron,"nsp3:V657,nsp16:V288F","T4690C,G21520T",,,,,743.35,787.07,125.03,240.3
BF.1.1,Omicron,"nsp3:Y107H,nsp6:V289L","T3038C,G11837T",,,,,6991.22,2581.65,0.0,0.0
BF.10,Omicron,"nsp13:A368V,N:P13S","C17339T,C28310T",N:P13S,,,,23.31,50.14,55.28,112.0
BF.10.1,Omicron,"nsp3:V1420,nsp13:A368V,S:N343,N:P13S","T6979G,C17339T,C22591T,C28310T",N:P13S,,,,0.0,0.0,0.0,0.0
BF.11,Omicron,ORF3a:S253,"C26151T,A28271C",,,,,149.8,271.87,21.49,45.42
BF.11.1,Omicron,"S:S1252F,ORF3a:S253","C25317T,C26151T",S:S1252F,,,,0.0,0.0,33.8,67.59
BF.11.2,Omicron,"nsp3:A274,ORF3a:S253","T3541C,C26151T",,,,,0.0,0.0,27.38,55.55
BF.11.3,Omicron,"nsp1:L122F,ORF3a:S253","C629T,C26151T",,,,,0.0,0.0,146.41,341.47
BF.11.4,Omicron,"S:S704L,ORF3a:S253","C23673T,C26151T,A28271C",S:S704L,,,,0.0,0.0,678.67,771.94
BF.11.5,Omicron,nsp2:S351G,"A1856G,A28271C",,,,,0.0,0.0,336.77,737.43
BF.13,Omicron,"S:D839,ORF3a:T268","T24079C,G26196A",,,,,186.39,349.03,212.54,377.32
BF.14,Omicron,"nsp13:H164Y,N:G19","C16726T,A28330G",nsp13:H164Y,,,,21.66,45.92,79.43,169.12
BF.15,Omicron,"nsp3:V1420,S:Y248H,M:L35,ORF6:P57L","T6979G,T22304C,C26625T,C27371T",S:Y248H,,,,0.0,0.0,265.25,714.77
BF.16,Omicron,nsp6:L69,T11177C,,,,,24.26,51.59,0.0,0.0
BF.17,Omicron,"nsp2:H255,nsp4:D117N","T1570C,G8903A",nsp4:D117N,,,,0.0,0.0,0.0,0.0
BF.19,Omicron,"nsp14:F326,N:T141I","C19017T,C28695T",N:T141I,,,,0.0,0.0,0.0,0.0
BF.2,Omicron,"nsp3:V1420,RdRp:V320L","T6979G,G14398T",,,,,479.96,794.73,82.23,166.63
BF.20,Omicron,"nsp3:V1420,nsp3:T1456N,M:L35,ORF6:P57L,N:G19","T6979G,C7086A,C26625T,C27371T,A28330G",,,,,0.0,0.0,0.0,0.0
BF.21,Omicron,"nsp2:L462F,nsp3:D117G","C2189T,A3069G",,,,,41.2,82.84,443.98,814.82
BF.22,Omicron,"nsp3:V1420,nsp4:L263,S:I569,N:T379I","T6979G,A9343G,T23269C,C29409T",N:T379I,,,,0.0,0.0,326.62,822.19
BF.23,Omicron,"nsp3:L689F,nsp3:V1420,S:A1020S","C4784T,T6979G,G24620T",S:A1020S,,,,0.0,0.0,0.0,0.0
BF.24,Omicron,"nsp2:G458C,S:A1020S","G2177T,G24620T",S:A1020S,,,,304.88,578.37,353.26,471.52
BF.25,Omicron,"nsp3:V1420,nsp14:T206","T6979G,C18657T",,,,,241.97,472.35,269.02,764.63
BF.26,Omicron,RdRp:G385S,G14593A,,,,,25.64,54.61,31.56,67.76
BF.27,Omicron,"nsp4:A21V,nsp16:Y152","C8616T,C21114T",,,,,324.63,617.99,182.44,467.64
BF.28,Omicron,nsp1:Q44L,A396T,,,,,27.77,58.78,28.19,61.28
BF.29,Omicron,"nsp3:Q380,ORF3a:M260K,ORF3a:M260I","A3859G,T26171A,G26172A","ORF3a:M260K,ORF3a:M260I",,,,0.0,0.0,208.64,520.9
BF.3,Omicron,"nsp3:V1420,S:T547I,S:A1020S","T6979G,C23202T,G24620T","S:A1020S,S:T547I",,,,507.38,825.22,349.03,1032.34
BF.3.1,Omicron,"nsp3:V1420,S:T547I,S:A1020S,ORF7a:N52","T6979G,C23202T,G24620T,C27549T","S:A1020S,S:T547I",,,,432.45,720.76,406.79,1238.28
BF.30,Omicron,"nsp3:T204I,nsp3:Y1742,nsp4:Y335,nsp4:N476,nsp14:E78","C3330T,C7945T,C9559T,T9982C,A18273G",,,,,0.0,0.0,0.0,0.0
BF.31.1,Omicron,"nsp14:E204,N:I157","G18651A,C28744T",,,,,0.0,0.0,0.0,0.0
BF.32,Omicron,"nsp3:T734N,nsp3:N855","C4920A,C5284T",nsp3:T734N,,,,128.46,240.73,0.0,0.0
BF.34,Omicron,"S:R646H,ORF3a:L115F","G23499A,G25737T",S:R646H,,,,0.0,0.0,0.0,0.0
BF.36,Omicron,"nsp1:S166G,nsp13:S350L","A761G,C17285T",,,,,34.06,71.64,835.73,1285.88
BF.4,Omicron,S:T259A,A22337G,S:T259A,,,,28.17,59.93,29.6,62.52
BF.40,Omicron,"nsp3:L373,nsp3:N855,N:GER30","G3838A,C5284T,TGGAGAACGC28360T",,,,,47.6,98.33,21.73,45.78
BF.41,Omicron,"ORF7b:A43V,N:G19","C27883T,A28330G",,,,,34.82,72.83,646.37,2019.32
BF.41.1,Omicron,"nsp1:A138V,3CLpro:V297I,S:N777","C678T,G10943A,C23893T",3CLpro:V297I,,,,0.0,0.0,0.0,0.0
BF.5,Omicron,"nsp3:V1420,nsp4:L471,nsp14:L495,S:A1020S","T6979G,C9967T,C19524T,G24620T",S:A1020S,,,,167.65,329.53,56.16,121.65
BF.5.1,Omicron,"nsp2:L274,nsp3:V1420,nsp4:I110V,nsp4:L471,nsp8:E23,nsp14:L495,S:IHV68I,S:V213G,S:R346T,S:L452R,S:F486V,S:A1020S,M:D3N,M:T172,ORF7a:H47Y,N:G19,N:Q43","C1627T,T6979G,A8882G,C9967T,G12160A,C19524T,TACATGT21765T,T22200G,G22599C,T22917G,T23018G,G24620T,G26529A,A27038G,C27532T,C27889T,A28330G,A28402G","M:D3N,S:A1020S,nsp4:I110V,S:V213G","S:L452R,S:F486V,S:R346T",,,0.0,0.0,0.0,0.0
BF.5.2,Omicron,"nsp6:N232,S:D627","C11668T,T23443C",,,,,0.0,0.0,0.0,0.0
BF.5.4,Omicron,"nsp4:L471,nsp6:K270R,S:A1020S","C9967T,A11781G,G24620T",S:A1020S,,,,0.0,0.0,0.0,0.0
BF.5.5,Omicron,"nsp4:L471,S:K147N,S:A1020S","C9967T,A22003T,G24620T","S:A1020S,S:K147N",,,,0.0,0.0,193.27,470.58
BF.6,Omicron,"S:G181A,N:G19","G22104C,A28330G",S:G181A,,,,434.2,1249.91,3407.32,3387.6
BF.7,Omicron,"nsp3:V1603,N:G19","C7528T,A28330G",,,,,20.19,42.55,22.56,47.08
BF.7.1,Omicron,"nsp3:V1603,S:G261V","C7528T,G22344T",S:G261V,,,,0.0,0.0,138.22,316.24
BF.7.10,Omicron,"nsp3:V1603,S:L1200,S:Q1201K,N:S33C","C7528T,C25162A,C25163A,A28370T","N:S33C,S:Q1201K",,,,0.0,0.0,146.93,251.79
BF.7.11,Omicron,"nsp3:A41,RdRp:G345,S:D1260Y","C2842T,A14475G,G25340T",S:D1260Y,,,,0.0,0.0,0.0,0.0
BF.7.12,Omicron,"nsp3:V1603,S:A942S","C7528T,G24386T",S:A942S,,,,0.0,0.0,0.0,0.0
BF.7.13.1,Omicron,"nsp16:N268,S:T430I","T21462C,C22851T",S:T430I,,,,0.0,0.0,0.0,0.0
BF.7.13.2,Omicron,"nsp3:K294,nsp3:D1031","A3601G,C5812T",,,,,0.0,0.0,0.0,0.0
BF.7.14,Omicron,"RdRp:L247F,S:C1243F,ORF10:N25","G14181C,G25290T,C29632T",S:C1243F,,,,0.0,0.0,24.57,50.93
BF.7.14.1,Omicron,"nsp3:I385V,nsp4:K138T","A3872G,A8967C",,,,,0.0,0.0,0.0,0.0
BF.7.14.4,Omicron,"nsp3:T1026I,RdRp:L247F","C5796T,G14181C",,,,,0.0,0.0,0.0,0.0
BF.7.14.5,Omicron,"nsp2:V94L,RdRp:L247F,nsp16:Y15","G1085T,G14181C,C20703T",,,,,0.0,0.0,0.0,0.0
BF.7.14.6,Omicron,"nsp2:V94L,nsp2:L390,RdRp:L247F,S:C1243F,N:S33C,ORF10:N25","G1085T,C1973T,G14181C,G25290T,A28370T,C29632T","N:S33C,S:C1243F",,,,0.0,0.0,0.0,0.0
BF.7.15,Omicron,"nsp3:A994V,nsp3:V1603,S:G257D","C5700T,C7528T,G22332A",S:G257D,,,,0.0,0.0,0.0,0.0
BF.7.17,Omicron,"nsp13:I151V,S:G1167S","A16687G,G25061A","nsp13:I151V,S:G1167S",,,,0.0,0.0,0.0,0.0
BF.7.19.1,Omicron,"nsp13:P78,ORF3a:*276","C16470T,A26219G",,,,,0.0,0.0,0.0,0.0
BF.7.2,Omicron,"S:F486I,S:H1101Y","T23018A,C24863T",S:H1101Y,S:F486I,,,0.0,0.0,0.0,0.0
BF.7.21,Omicron,"nsp3:V1113,nsp3:V1603,N:F110","A6058G,C7528T,C28603T",,,,,94.93,209.18,132.76,244.44
BF.7.22,Omicron,"nsp3:V1603,nsp4:L185","C7528T,T9107C",,,,,0.0,0.0,166.18,370.64
BF.7.23,Omicron,"nsp3:V1603,RdRp:T248I,N:G19","C7528T,C14183T,A28330G",,,,,0.0,0.0,151.93,269.89
BF.7.24,Omicron,"nsp3:V1603,3CLpro:D295,M:T172","C7528T,T10939C,A27038G",,,,,0.0,0.0,138.92,321.9
BF.7.26,Omicron,"nsp3:V1603,nsp16:P7,N:G19","C7528T,G20679A,A28330G",,,,,0.0,0.0,208.76,474.98
BF.7.27,Omicron,"nsp4:N66,RdRp:L247F,ORF7a:H47Y","C8752T,G14181C,C27532T",,,,,157.45,284.18,0.0,0.0
BF.7.3,Omicron,"nsp3:V1603,RdRp:I837,S:K182E","C7528T,C15951T,A22106G",S:K182E,,,,0.0,0.0,0.0,0.0
BF.7.4,Omicron,nsp16:L275,T21483C,,,,,24.72,52.18,15.37,31.77
BF.7.4.1,Omicron,"GFL:A24,nsp13:P504S,nsp16:L275","T13096C,C17746T,T21483C",nsp13:P504S,,,,170.75,294.12,171.42,279.68
BF.7.4.2,Omicron,"GFL:A24,nsp14:S221T,nsp16:L275","T13096C,T18700A,T21483C",,,,,0.0,0.0,181.48,436.26
BF.7.5,Omicron,"nsp13:K462,N:P168","A17622G,A28777G",,,,,136.76,304.83,138.76,318.86
BF.7.5.1,Omicron,"nsp13:K462,M:H155Y","A17622G,C26985T",M:H155Y,,,,0.0,0.0,232.06,516.96
BF.7.6,Omicron,"nsp2:T629,ORF3a:E239D","A2692T,G26109T",ORF3a:E239D,,,,21.6,45.72,22.6,47.2
BF.7.7,Omicron,"nsp6:V178,S:D80G","A11506G,A21801G",S:D80G,,,,22.93,48.52,230.54,525.14
BF.7.9,Omicron,"nsp3:V1603,S:Y351,M:T172","C7528T,T22615C,A27038G",,,,,0.0,0.0,0.0,0.0
BF.8,Omicron,"N:G19,N:T362K","A28330G,C29358A",N:T362K,,,,29.66,63.16,165.73,342.9
BF.9,Omicron,nsp6:Q27H,G11053C,,,,,22.21,46.67,26.69,56.49
BG.1,Omicron,"RdRp:D523,RdRp:A923T","T15009C,G16207A",,,,,0.0,0.0,0.0,0.0
BG.2,Omicron,"RdRp:Y884,N:T282I","C16092T,C29118T",N:T282I,,,,31.61,66.21,0.0,0.0
BG.3,Omicron,"nsp4:T204A,GFL:D131","A9164G,T13417C",,,,,0.0,0.0,0.0,0.0
BG.4,Omicron,"RdRp:D523,N:H145,N:P162L","T15009C,C28708T,C28758T",N:P162L,,,,0.0,0.0,0.0,0.0
BG.5,Omicron,"nsp8:D30G,RdRp:D523","A12180G,T15009C",,,,,1173.34,1176.29,0.0,0.0
BH.1,Omicron,"S:K417T,S:L452Q,S:V1264L","A22812C,T22917A,G25352T",S:V1264L,"S:L452Q,S:K417T",,,0.0,0.0,0.0,0.0
BK.1,Omicron,"nsp6:K270R,N:D63","A11781G,C28462T",,,,,193.84,381.42,126.77,267.77
BL.1.3,Omicron,"S:F490L,S:D574V","T23030C,A23283T",S:D574V,S:F490L,,,0.0,0.0,0.0,0.0
BL.1.4,Omicron,"nsp3:L1123,ORF7b:S31P","T6086C,T27846C",,,,,0.0,0.0,0.0,0.0
BL.3,Omicron,"nsp3:P1867S,S:D574V","C8318T,A23283T",S:D574V,,,,0.0,0.0,0.0,0.0
BL.4,Omicron,"nsp6:V84,S:K386","C11224T,A22720G",,,,,0.0,0.0,0.0,0.0
BL.5,Omicron,ORF8:L4F,"C27903T,G29540T",,,,,0.0,0.0,0.0,0.0
BL.6,Omicron,"nsp3:L312F,S:T1238,ORF10:A28V","C3653T,C25276A,C29640T",,,,,0.0,0.0,0.0,0.0
BM.1.1.2,Omicron,"nsp4:F101L,S:P1079T","T8855C,C24797A",S:P1079T,,,,0.0,0.0,0.0,0.0
BM.1.1.3,Omicron,"nsp3:Y137,ORF10:A8V","C3130T,C29580T",,,,,300.68,675.88,29.37,62.23
BM.1.1.4,Omicron,"nsp2:S36Y,nsp3:Y137,N:Q418","C912A,C3130T,G29527A",,,,,0.0,0.0,0.0,0.0
BM.1.1.5,Omicron,"nsp13:Y217,nsp14:V182I,S:N185S","C16887T,G18583A,A22116G",S:N185S,,,,0.0,0.0,0.0,0.0
BM.2.1,Omicron,"nsp4:S358,nsp14:V182I","T9628C,G18583A",,,,,0.0,0.0,0.0,0.0
BM.4.1.1,Omicron,"nsp3:Q380K,nsp8:N118S,nsp14:V182I,S:G257S","C3857A,A12444G,G18583A,G22331A",S:G257S,,,,18.27,38.2,17.59,36.55
BN.1.1,Omicron,"nsp15:P205,N:L104","C20235T,C28585T",,,,,0.0,0.0,128.5,264.81
BN.1.1.1,Omicron,"nsp15:P205,S:S494P","C20235T,T23042C",,S:S494P,,,0.0,0.0,0.0,0.0
BN.1.10,Omicron,"nsp3:S403L,nsp15:P205,S:Y145H","C3927T,C20235T,T21995C",S:Y145H,,,,0.0,0.0,0.0,0.0
BN.1.2,Omicron,"nsp15:P205,E:D72G","C20235T,A26459G",,,,,110.07,229.62,30.19,60.12
BN.1.2.1,Omicron,"nsp2:R370,nsp14:K147I","C1915T,A18479T",,,,,0.0,0.0,157.21,323.3
BN.1.2.2,Omicron,"nsp15:P205,E:D72G","C20235T,A26459G,C29546T",,,,,0.0,0.0,0.0,0.0
BN.1.2.3,Omicron,"nsp2:R222,nsp15:P205,E:D72G","C1471T,C20235T,A26459G",,,,,91.61,183.25,112.28,182.43
BN.1.2.4,Omicron,"nsp14:D222H,E:D72G","G18703C,A26459G",,,,,0.0,0.0,0.0,0.0
BN.1.2.5,Omicron,"nsp6:T181,nsp13:T199","T11515C,C16833T",,,,,0.0,0.0,0.0,0.0
BN.1.2.6,Omicron,"nsp13:A403S,E:D72G","G17443T,A26459G",,,,,0.0,0.0,0.0,0.0
BN.1.2.8,Omicron,"nsp3:S675,N:N126","T4744C,C28651T",,,,,0.0,0.0,0.0,0.0
BN.1.3,Omicron,"nsp6:M58I,ORF3a:T229I","G11146T,C26078T",,,,,165.72,268.1,37.73,77.34
BN.1.3.1,Omicron,"3CLpro:F223L,nsp6:M58I","T10721C,G11146T",3CLpro:F223L,,,,142.9,238.72,124.53,259.27
BN.1.3.12,Omicron,"nsp6:M58I,RdRp:C306","G11146T,C14358T",,,,,0.0,0.0,330.84,412.89
BN.1.3.2,Omicron,"nsp6:M58I,nsp14:L259R","G11146T,T18815G",,,,,0.0,0.0,0.0,0.0
BN.1.3.3,Omicron,"nsp6:M58I,nsp9:T62,ORF3a:T229I","G11146T,T12871C,C26078T",,,,,0.0,0.0,108.41,291.01
BN.1.3.5,Omicron,"nsp1:H110Y,nsp3:A1557,nsp6:M58I,nsp15:P205,ORF3a:T229I,ORF7b:C41W","C593T,C7390A,G11146T,C20235T,C26078T,T27878G",,,,,0.0,0.0,0.0,0.0
BN.1.3.6,Omicron,"nsp1:H110Y,nsp3:A1557,nsp6:M58I,nsp15:P205,ORF3a:T229I,M:R174Q","C593T,C7390A,G11146T,C20235T,C26078T,G27043A",M:R174Q,,,,235.85,851.8,0.0,0.0
BN.1.3.7,Omicron,"nsp3:T611I,nsp3:A1557,nsp6:M58I,nsp15:P205,ORF3a:T229I","C4551T,C7390A,G11146T,C20235T,C26078T",,,,,0.0,0.0,115.62,300.59
BN.1.3.8,Omicron,"nsp1:H110Y,nsp6:M58I,S:D1139H","C593T,G11146T,G24977C",S:D1139H,,,,0.0,0.0,141.5,415.6
BN.1.3.9,Omicron,"nsp1:H110Y,nsp6:M58I,S:V83F","C593T,G11146T,G21809T",S:V83F,,,,0.0,0.0,0.0,0.0
BN.1.4,Omicron,"nsp15:P205,ORF7a:S36","C20235T,T27501C",,,,,19.26,40.26,31.2,64.86
BN.1.4.1,Omicron,"3CLpro:T26,nsp6:D267","A10132T,T11773C",,,,,0.0,0.0,228.99,309.65
BN.1.4.2,Omicron,"nsp15:T48I,S:Q1113K","C19763T,C24899A",S:Q1113K,,,,0.0,0.0,110.83,226.48
BN.1.4.3,Omicron,"nsp3:Y129,RdRp:T293I","T3106C,C14318T",,,,,0.0,0.0,72.5,183.98
BN.1.4.4,Omicron,"nsp13:V226L,nsp14:V199M","G16912T,G18634A",,,,,0.0,0.0,171.31,357.69
BN.1.4.5,Omicron,"nsp15:T321,ORF7a:S36","T20583C,T27501C",,,,,0.0,0.0,0.0,0.0
BN.1.5,Omicron,"nsp15:P205,nsp16:G39D","C20235T,G20774A",,,,,185.47,572.81,188.52,293.02
BN.1.5.2,Omicron,"nsp3:L728,nsp3:S1285F,nsp15:P205","C4901T,C6573T,C20235T",,,,,196.28,604.5,0.0,0.0
BN.1.6,Omicron,"nsp14:I305,N:A267S","T18954A,G29072T",N:A267S,,,,0.0,0.0,0.0,0.0
BN.1.7,Omicron,"nsp15:P205,S:H1101Y","C20235T,C24863T",S:H1101Y,,,,505.82,908.58,49.31,99.43
BN.1.8,Omicron,"nsp13:S310,S:T22","T17166G,T21628C",,,,,0.0,0.0,0.0,0.0
BN.1.9,Omicron,"nsp15:P205,E:V58F","C20235T,G26416T",,,,,0.0,0.0,0.0,0.0
BN.2,Omicron,"nsp8:N118S,N:Q163L","A12444G,A28761T",N:Q163L,,,,0.0,0.0,0.0,0.0
BN.2.1,Omicron,"S:H49Y,S:I210V,N:Q163L","C21707T,A22190G,A28761T","N:Q163L,S:I210V,S:H49Y",,,,0.0,0.0,0.0,0.0
BN.5,Omicron,"nsp4:V192M,nsp8:N118S","G9128A,A12444G",,,,,0.0,0.0,0.0,0.0
BN.6,Omicron,"nsp3:V359,nsp3:S403L,nsp3:L623,nsp3:P822S,nsp8:T17A,nsp8:N118S,S:K147E,S:W152R,S:F157L,S:I210V,S:G257S,S:K356T","C3796T,C3927T,C4586T,C5183T,A12140G,A12444G,A22001G,T22016C,C22033A,A22190G,G22331A,A22629C","S:I210V,S:G257S,S:F157L,S:W152R,S:K147E",S:K356T,,,0.0,0.0,0.0,0.0
BQ.1.1.1,Omicron,nsp14:V115A,T18383C,,,,,14.55,29.69,26.35,55.81
BQ.1.1.10,Omicron,"nsp13:D59,nsp13:N268S","T16413C,A17039G",nsp13:N268S,,,,150.31,298.0,181.43,360.55
BQ.1.1.13,Omicron,"nsp2:Q376K,nsp3:L79,RdRp:Y273H,nsp13:M233I,nsp13:N268S,E:V62F,N:P13","C1931A,T2954C,T14257C,G16935A,A17039G,G26428T,C28312T",nsp13:N268S,,,,26.07,54.02,157.05,240.68
BQ.1.1.14,Omicron,"nsp3:L79,RdRp:Y273H,nsp13:N268S,S:R682","T2954C,T14257C,A17039G,G23608T",nsp13:N268S,,,,0.0,0.0,0.0,0.0
BQ.1.1.15,Omicron,"nsp13:N268S,nsp14:F286","A17039G,T18897C",nsp13:N268S,,,,255.36,782.31,140.05,388.65
BQ.1.1.16,Omicron,"nsp13:M233I,nsp13:N268S,S:Q607H","G16935A,A17039G,G23383T","S:Q607H,nsp13:N268S",,,,0.0,0.0,0.0,0.0
BQ.1.1.17,Omicron,"nsp2:Q376K,nsp3:L79,nsp3:S1455F,RdRp:Y273H,nsp13:M233I,nsp13:N268S,N:P13","C1931A,T2954C,C7083T,T14257C,G16935A,A17039G,C28312T",nsp13:N268S,,,,0.0,0.0,0.0,0.0
BQ.1.1.18,Omicron,"nsp3:H1274,nsp13:N268S","C6541T,A17039G",nsp13:N268S,,,,22.37,47.58,19.11,40.05
BQ.1.1.19,Omicron,"nsp13:N268S,N:Q380H","A17039G,A29413T","N:Q380H,nsp13:N268S",,,,0.0,0.0,212.09,668.48
BQ.1.1.2,Omicron,"nsp13:N268S,ORF7a:A13T","A17039G,G27430A",nsp13:N268S,,,,208.04,401.84,148.44,291.72
BQ.1.1.20,Omicron,ORF3a:H204Y,C26002T,ORF3a:H204Y,,,,35.69,76.33,13.88,28.46
BQ.1.1.21,Omicron,"nsp13:N268S,nsp13:V570","A17039G,A17946G",nsp13:N268S,,,,0.0,0.0,0.0,0.0
BQ.1.1.22,Omicron,nsp2:S36,C913A,,,,,29.33,62.2,28.79,61.77
BQ.1.1.23,Omicron,"nsp13:N268S,ORF3a:V97I","A17039G,G25681A",nsp13:N268S,,,,72.46,184.27,89.07,227.92
BQ.1.1.24,Omicron,"nsp7:V33,nsp13:N268S","C11941T,A17039G",nsp13:N268S,,,,0.0,0.0,319.57,397.05
BQ.1.1.25,Omicron,"GFL:S72,nsp13:N268S","G13240A,A17039G",nsp13:N268S,,,,0.0,0.0,0.0,0.0
BQ.1.1.26,Omicron,"S:E471Q,ORF3a:Y107C","G22973C,A25712G",S:E471Q,,,,0.0,0.0,0.0,0.0
BQ.1.1.27,Omicron,"nsp4:F101L,S:G181R","T8855C,G22103A",S:G181R,,,,0.0,0.0,0.0,0.0
BQ.1.1.28,Omicron,"nsp13:P53S,nsp14:V263","C16393T,C18828T",nsp13:P53S,,,,21.65,46.06,18.56,38.78
BQ.1.1.29,Omicron,"nsp3:A1711T,nsp6:D134,RdRp:Y273H,nsp13:N268S,S:Q613H","G7850A,T11374C,T14257C,A17039G,G23401T","S:Q613H,nsp13:N268S",,,,0.0,0.0,255.0,477.48
BQ.1.1.3,Omicron,"RdRp:V557,nsp13:N268S","A15111G,A17039G",nsp13:N268S,,,,95.15,173.9,56.81,103.73
BQ.1.1.30,Omicron,"nsp9:D26,RdRp:Y273H,nsp13:N268S","C12763T,T14257C,A17039G",nsp13:N268S,,,,0.0,0.0,0.0,0.0
BQ.1.1.32,Omicron,"nsp13:N268S,S:M153I","A17039G,G22021A","S:M153I,nsp13:N268S",,,,146.04,286.68,207.59,561.93
BQ.1.1.34,Omicron,"nsp3:L79,nsp3:V1603,RdRp:Y273H,nsp13:N268S,S:S494P","T2954C,C7528T,T14257C,A17039G,T23042C",nsp13:N268S,S:S494P,,,0.0,0.0,0.0,0.0
BQ.1.1.35,Omicron,"nsp1:G112,nsp3:A994T","C601T,G5699A",,,,,119.4,313.41,163.53,299.56
BQ.1.1.37,Omicron,"nsp2:I216,nsp3:L79,nsp13:N268S","T1453C,T2954C,A17039G",nsp13:N268S,,,,0.0,0.0,0.0,0.0
BQ.1.1.38,Omicron,"nsp3:D1638,S:P251L,S:N856S","T7633C,C22314T,A24129G","S:N856S,S:P251L",,,,0.0,0.0,24.07,49.97
BQ.1.1.39,Omicron,"S:F718,S:P1162L","T23716C,C25047T",S:P1162L,,,,0.0,0.0,0.0,0.0
BQ.1.1.4,Omicron,"nsp13:N268S,N:H300","A17039G,T29173C",nsp13:N268S,,,,28.48,59.27,84.96,159.01
BQ.1.1.40,Omicron,"nsp13:N268S,N:T24I","A17039G,C28344T","nsp13:N268S,N:T24I",,,,765.07,1044.54,0.0,0.0
BQ.1.1.41,Omicron,"S:K182I,S:V860","A22107T,T24142C",S:K182I,,,,239.07,328.96,0.0,0.0
BQ.1.1.42,Omicron,"nsp2:D23N,nsp13:N268S,S:S704L","G872A,A17039G,C23673T","nsp13:N268S,S:S704L",,,,0.0,0.0,257.75,472.82
BQ.1.1.45,Omicron,S:Y248D,T22304G,S:Y248D,,,,19.08,40.2,24.64,52.61
BQ.1.1.48,Omicron,"nsp2:Q376K,nsp3:L79,nsp6:L260F,RdRp:F219,RdRp:Y273H,nsp13:M233I,nsp13:N268S,S:H245N,S:K444T,N:P13,N:E136D","C1931A,T2954C,C11750T,C14097T,T14257C,G16935A,A17039G,C22295A,A22893C,C28312T,G28681T","nsp13:N268S,N:E136D,S:H245N",S:K444T,,,0.0,0.0,0.0,0.0
BQ.1.1.49,Omicron,"nsp2:I472V,S:H1083D","A2219G,C24809G",S:H1083D,,,,0.0,0.0,0.0,0.0
BQ.1.1.5,Omicron,"nsp13:I480,nsp15:P262L","C17676T,C20405T",,,,,14.06,28.55,19.55,41.01
BQ.1.1.51,Omicron,"nsp13:N268S,ORF3a:L101F","A17039G,C25693T",nsp13:N268S,,,,136.24,281.04,0.0,0.0
BQ.1.1.52,Omicron,"nsp3:T1429,nsp13:N268S","C7006T,A17039G",nsp13:N268S,,,,274.2,361.58,71.28,147.95
BQ.1.1.54,Omicron,"nsp14:V263,N:A211T","C18828T,G28904A",N:A211T,,,,107.78,284.29,0.0,0.0
BQ.1.1.55,Omicron,"S:T109,S:K1149R","T21889G,A25008G",S:K1149R,,,,0.0,0.0,0.0,0.0
BQ.1.1.57,Omicron,S:S256A,"T22328G,C29541T",S:S256A,,,,350.05,602.32,0.0,0.0
BQ.1.1.58,Omicron,"nsp13:N268S,S:I934V","A17039G,A24362G","nsp13:N268S,S:I934V",,,,0.0,0.0,226.76,382.61
BQ.1.1.59,Omicron,"nsp14:V263,S:S591,S:T732I","C18828T,T23335G,C23757T",S:T732I,,,,0.0,0.0,0.0,0.0
BQ.1.1.6,Omicron,"nsp2:L501F,nsp13:N268S","C2306T,A17039G",nsp13:N268S,,,,162.39,330.24,25.96,54.63
BQ.1.1.60,Omicron,"nsp13:N268S,S:S691F,ORF8:V62L","A17039G,C23634T,G28077T","nsp13:N268S,ORF8:V62L,S:S691F",,,,0.0,0.0,0.0,0.0
BQ.1.1.61,Omicron,"RdRp:P328,S:P621H","A14424C,C23424A",S:P621H,,,,0.0,0.0,0.0,0.0
BQ.1.1.62,Omicron,"nsp13:N388,ORF8:F6S","T17400C,T27910C",,,,,0.0,0.0,0.0,0.0
BQ.1.1.63,Omicron,"nsp14:H314,nsp14:V328I","C18981T,G19021A",,,,,851.48,1001.93,0.0,0.0
BQ.1.1.64,Omicron,"nsp2:L398,nsp3:L79,RdRp:Y273H,nsp13:M233I,S:F186S,S:K444T","G1999T,T2954C,T14257C,G16935A,T22119C,A22893C",S:F186S,S:K444T,,,0.0,0.0,0.0,0.0
BQ.1.1.65,Omicron,"nsp13:N268S,S:K147I,N:T135I","A17039G,A22002T,C28677T","nsp13:N268S,N:T135I,S:K147I",,,,1391.58,1444.68,0.0,0.0
BQ.1.1.68,Omicron,"nsp3:V393I,nsp13:N268S,M:F100","G3896A,A17039G,C26822T",nsp13:N268S,,,,153.78,440.15,0.0,0.0
BQ.1.1.69,Omicron,"nsp13:N268S,nsp14:S503L","A17039G,C19547T",nsp13:N268S,,,,143.5,409.96,135.6,226.64
BQ.1.1.7,Omicron,"nsp2:S36Y,nsp13:N268S","C912A,A17039G",nsp13:N268S,,,,28.93,60.51,181.2,390.76
BQ.1.1.70,Omicron,"nsp3:A85V,nsp13:M233I,nsp13:N268S,M:S212G,N:P13","C2973T,G16935A,A17039G,A27156G,C28312T","nsp13:N268S,M:S212G",,,,0.0,0.0,0.0,0.0
BQ.1.1.71,Omicron,"S:K182E,ORF3a:Y189","A22106G,T25959C",S:K182E,,,,0.0,0.0,0.0,0.0
BQ.1.1.72,Omicron,"nsp3:L79,RdRp:D109A,nsp13:M233I,nsp13:N268S,N:P13","T2954C,A13766C,G16935A,A17039G,C28312T",nsp13:N268S,,,,0.0,0.0,168.67,337.58
BQ.1.1.77,Omicron,"nsp3:N1680S,nsp9:F56,nsp13:A505V","A7758G,C12853T,C17750T",,,,,0.0,0.0,0.0,0.0
BQ.1.1.79,Omicron,"nsp3:H342,S:Q613H","T3745C,G23401T",S:Q613H,,,,0.0,0.0,0.0,0.0
BQ.1.1.8,Omicron,"nsp2:H194Y,nsp3:L151F","C1385T,C3170T",,,,,0.0,0.0,179.88,282.93
BQ.1.10,Omicron,"RdRp:Y273H,ORF7a:D69","T14257C,C27600T",,,,,27.23,57.16,166.61,265.32
BQ.1.10.1,Omicron,"nsp3:Y107,S:H146L,ORF7a:D69","C3040T,A21999T,C27600T",S:H146L,,,,182.13,548.73,141.19,401.62
BQ.1.10.2,Omicron,"nsp4:N244,ORF7a:D69","C9286T,C27600T",,,,,142.83,417.72,15.85,31.97
BQ.1.10.3,Omicron,"nsp3:F1107,3CLpro:A255,ORF3a:K16E,ORF7a:D69","C6040T,T10819C,A25438G,C27600T",ORF3a:K16E,,,,0.0,0.0,0.0,0.0
BQ.1.11.1,Omicron,"nsp2:V311,nsp3:E815D,S:L878","G1738T,G5164T,T24194C",,,,,0.0,0.0,0.0,0.0
BQ.1.12,Omicron,"RdRp:Y273H,N:N192","T14257C,C28849T",,,,,213.72,325.29,103.66,282.77
BQ.1.13,Omicron,"nsp2:R52,nsp2:V447I","T961C,G2144A",,,,,169.55,271.9,62.13,132.06
BQ.1.13.1,Omicron,"nsp2:V447I,ORF3a:D238","G2144A,T26106C",,,,,177.06,344.12,119.07,309.27
BQ.1.14,Omicron,nsp14:L177,C18570A,,,,,28.21,60.48,15.69,31.91
BQ.1.15,Omicron,"nsp4:L353F,RdRp:Y273H","C9611T,T14257C",,,,,27.11,57.19,67.32,133.35
BQ.1.16,Omicron,"nsp2:A360V,nsp15:I85","C1884T,C19875T",,,,,0.0,0.0,248.25,925.25
BQ.1.17,Omicron,"nsp3:L930,S:K444M","T5507C,A22893T",,S:K444M,,,0.0,0.0,0.0,0.0
BQ.1.18,Omicron,"nsp13:N268S,E:P71S","A17039G,C26455T",nsp13:N268S,,,,197.33,575.0,63.83,122.96
BQ.1.19,Omicron,"nsp3:L79,RdRp:Y273H,S:S494P,S:N603S","T2954C,T14257C,T23042C,A23370G",S:N603S,S:S494P,,,0.0,0.0,0.0,0.0
BQ.1.2,Omicron,"RdRp:Y273H,S:I666V","T14257C,A23558G",S:I666V,,,,29.26,58.94,99.79,218.71
BQ.1.2.1,Omicron,N:H300N,C29171A,N:H300N,,,,25.45,55.3,26.17,55.61
BQ.1.2.2,Omicron,"nsp3:L79,RdRp:Y273H,S:K147E,S:I666V,M:V143","T2954C,T14257C,A22001G,A23558G,G26951C","S:I666V,S:K147E",,,,0.0,0.0,0.0,0.0
BQ.1.2.3,Omicron,"RdRp:Y273H,S:I666V,E:V24L","T14257C,A23558G,G26314C",S:I666V,,,,206.48,430.45,0.0,0.0
BQ.1.20,Omicron,"nsp3:Y996,S:A348S","T5707C,G22604T",,S:A348S,,,0.0,0.0,0.0,0.0
BQ.1.21,Omicron,"S:R346S,S:V1094,ORF3a:L71","A22600C,C24844T,C25603T",,S:R346S,,,0.0,0.0,104.74,217.44
BQ.1.23,Omicron,"nsp2:T616,nsp13:N268S","A2653G,A17039G",nsp13:N268S,,,,102.32,272.36,315.27,579.1
BQ.1.25.1,Omicron,"nsp3:F1773,ORF3a:A54V,ORF3a:Q213","T8038C,C25553T,G26031A",,,,,203.04,594.83,121.18,239.46
BQ.1.26,Omicron,"RdRp:Y273H,ORF3a:I169V,E:R61L,N:P13","T14257C,A25897G,G26426T,C28312T",,,,,0.0,0.0,181.43,287.28
BQ.1.26.1,Omicron,"nsp2:S68N,nsp13:V495,ORF3a:I169V","G1008A,G17721T,A25897G",,,,,0.0,0.0,496.91,883.76
BQ.1.26.2,Omicron,"nsp2:Q376K,nsp3:L79,nsp6:L260F,RdRp:Y273H,nsp13:M233I,nsp13:V495,S:F157L,ORF3a:I169V,E:R61L,N:P13","C1931A,T2954C,C11750T,T14257C,G16935A,G17721T,C22033A,A25897G,G26426T,C28312T",S:F157L,,,,0.0,0.0,0.0,0.0
BQ.1.27,Omicron,"nsp13:N268S,ORF10:Y14","A17039G,T29599C",nsp13:N268S,,,,0.0,0.0,0.0,0.0
BQ.1.28,Omicron,"nsp15:P270L,S:N1178,ORF3a:R68I","C20429T,C25096T,G25595T",,,,,201.99,591.8,0.0,0.0
BQ.1.29,Omicron,"nsp2:E324,nsp3:V1339I,nsp15:P270L,S:E554Q,ORF3a:R68I,N:L407","A1777G,G6734A,C20429T,G23222C,G25595T,T29492C",S:E554Q,,,,0.0,0.0,0.0,0.0
BQ.1.3,Omicron,"3CLpro:L30I,S:E619Q","C10142A,G23417C",S:E619Q,,,,112.37,307.94,221.12,724.49
BQ.1.3.1,Omicron,"nsp2:P568,3CLpro:L30I,S:E619Q","C2509T,C10142A,G23417C",S:E619Q,,,,159.98,338.96,194.84,594.29
BQ.1.3.2,Omicron,"nsp3:L1035F,S:E619Q","C5822T,G23417C",S:E619Q,,,,26.39,53.65,14.35,29.23
BQ.1.32,Omicron,"nsp8:N192,N:Q39L","T12667C,A28389T",N:Q39L,,,,23.88,50.73,213.85,458.14
BQ.1.33,Omicron,"S:K147I,S:D287","A22002T,T22423C",S:K147I,,,,0.0,0.0,0.0,0.0
BQ.1.4,Omicron,"S:V951,N:H300Q","G24415T,T29173G",N:H300Q,,,,465.72,863.14,225.76,330.43
BQ.1.5,Omicron,"RdRp:Y273H,nsp13:T153I","T14257C,C16694T",nsp13:T153I,,,,216.84,451.44,146.29,324.45
BQ.1.6,Omicron,"nsp1:G94C,E:F23","G545T,C26313T",,,,,170.55,379.82,0.0,0.0
BQ.1.7,Omicron,"S:L54F,ORF3a:H182Y","G21724T,C25936T","S:L54F,ORF3a:H182Y",,,,0.0,0.0,0.0,0.0
BQ.1.8,Omicron,"nsp2:S325F,nsp3:I1672","C1779T,C7735T",,,,,22.97,48.74,19.33,40.7
BQ.1.8.1,Omicron,"nsp2:S325F,nsp2:Q376K,nsp3:L79,nsp3:I1672,nsp3:D1844,RdRp:Y273H,nsp13:M233I,nsp13:N268S,S:L5F,S:S256L,N:P13","C1779T,C1931A,T2954C,C7735T,C8251T,T14257C,G16935A,A17039G,C21575T,C22329T,C28312T","nsp13:N268S,S:L5F,S:S256L",,,,0.0,0.0,0.0,0.0
BQ.1.8.2,Omicron,"nsp3:I1672,nsp3:D1844,nsp8:S8","C7735T,C8251T,C12115T",,,,,0.0,0.0,248.59,848.96
BQ.1.9,Omicron,"nsp3:V1786I,nsp15:A283","G8075A,G20469A",,,,,124.88,354.8,0.0,0.0
BR.1.2,Omicron,"nsp4:V16,nsp4:F326,S:K444M","G8602A,C9532T,A22893T",,S:K444M,,,220.56,493.68,0.0,0.0
BR.2.1,Omicron,"nsp4:F326,S:F486I","C9532T,T23018A",,S:F486I,,,178.34,499.36,125.11,254.45
BR.3,Omicron,"nsp4:V16,nsp4:F326,RdRp:T20A","G8602A,C9532T,A13498G",,,,,0.0,0.0,0.0,0.0
BR.4,Omicron,"nsp4:V16,ORF3a:T32I","G8602A,C25487T",ORF3a:T32I,,,,0.0,0.0,0.0,0.0
BR.5,Omicron,"nsp4:V16,nsp8:K72R","G8602A,A12306G",,,,,0.0,0.0,0.0,0.0
BS.1,Omicron,"3CLpro:S113,nsp13:T61I","A10393C,C16418T",,,,,0.0,0.0,0.0,0.0
BT.1,Omicron,"3CLpro:N151,ORF7a:P34H,N:I337","C10507T,C27494A,C29284T",,,,,0.0,0.0,0.0,0.0
BT.2,Omicron,"nsp14:D379N,N:G5,N:I337","G19174A,A28288G,C29284T",,,,,0.0,0.0,210.12,528.61
BU.1,Omicron,"nsp6:A128V,nsp13:T127N,S:K444M","C11355T,C16616A,A22893T",,S:K444M,,,192.07,425.49,137.54,416.48
BU.2,Omicron,"nsp2:L274,nsp6:A128V,nsp8:E23,nsp8:Q73,nsp13:D32,nsp13:T127N,S:V445A,S:F486V,ORF3a:T89I,M:D3N,M:L164,ORF7a:Y40,N:G19","C1627T,C11355T,G12160A,G12310A,C16332T,C16616A,T22896C,T23018G,C25658T,G26529A,C27012T,C27513T,C27889T,A28330G",M:D3N,"S:V445A,S:F486V",,,0.0,0.0,0.0,0.0
BU.3,Omicron,"nsp6:A128V,nsp14:V236,S:K147N","C11355T,C18747T,A22003T",S:K147N,,,,0.0,0.0,205.69,711.01
BV.1,Omicron,"S:P251H,S:R1014K","C22314A,G24603A","S:R1014K,S:P251H",,,,0.0,0.0,0.0,0.0
BW.1,Omicron,"nsp2:V447I,nsp14:N306","G2144A,T18957C",,,,,28.36,56.81,75.41,144.78
BW.1.1,Omicron,"nsp14:N306,N:K257","T18957C,G29044A",,,,,83.63,178.68,0.0,0.0
BW.1.1.1,Omicron,"nsp14:N306,S:P665,N:K257","T18957C,C23557T,G29044A",,,,,0.0,0.0,0.0,0.0
BW.1.1.2,Omicron,"nsp2:V447I,nsp13:P78S,N:K257","G2144A,C16468T,G29044A",,,,,0.0,0.0,0.0,0.0
BY.1.1.1,Omicron,"nsp4:K8R,nsp4:A149S","A8577G,G8999T",,,,,0.0,0.0,0.0,0.0
BY.1.2,Omicron,"nsp8:N118S,nsp9:G38S,M:L102","A12444G,G12797A,G26828T",,,,,0.0,0.0,0.0,0.0
BZ.1,Omicron,"nsp1:K120N,nsp2:K500,S:Q677H","G625T,G2305A,G23593C",S:Q677H,,,,0.0,0.0,3860.22,4379.85
BZ.2,Omicron,"nsp1:K120N,nsp2:K500,nsp4:H31Y","G625T,G2305A,C8645T",,,,,0.0,0.0,0.0,0.0
C.1.2,,"nsp3:K1660,S:L216","A7699G,C22210T",,,,,0.0,0.0,2329.04,8466.97
C.12,,"nsp3:T428I,RdRp:P809","C4002T,T15867G",nsp3:T428I,,,,,,,
C.14,,"nsp3:T428I,3CLpro:G15S,RdRp:Y32,S:T723,N:R203,N:P302","C4002T,G10097A,C13536T,C23731T,G28882A,G29179T","nsp3:T428I,3CLpro:G15S",,,,,,,
C.16,,"nsp3:E195K,S:T723","G3302A,C23731T",,,,,,,,
C.18,,"nsp3:T428I,3CLpro:G15S,nsp7:D38,RdRp:Y32,nsp16:K160,S:T723","C4002T,G10097A,C11956T,C13536T,G21138A,C23731T","nsp3:T428I,3CLpro:G15S",,,,,,,
C.2.1,,"RdRp:L302S,nsp14:A85S,S:N501T","T14345C,G18292T,A23064C",,S:N501T,,,,,,
C.20,,"nsp3:L825,nsp6:V131,N:R149","G5194T,G11365T,C28720T",,,,,,,,
C.23,,"nsp3:T428I,nsp3:K487N","C4002T,G4180T",nsp3:T428I,,,,,,,
C.26,,"nsp3:T428I,nsp8:R190","C4002T,G12661A",nsp3:T428I,,,,,,,
C.27,,"S:T723,ORF3a:I186V","C23731T,A25948G",ORF3a:I186V,,,,,,,
C.28,,"nsp3:T428I,ORF8:Q27*","C4002T,C27972T,C29546A","nsp3:T428I,ORF8:Q27*",,,,,,,
C.3,,"nsp2:G548C,3CLpro:G15S,S:V213L,S:T723","G2447T,G10097A,G22199T,C23731T","S:V213L,3CLpro:G15S",,,,,,,
C.30,,"nsp3:E95D,S:K1073N","G3004T,G24781T",S:K1073N,,,,,,,
C.31,,"nsp16:R255S,ORF8:F3","G21423T,T27902C",,,,,,,,
C.35,,"nsp15:V38F,S:T723","G19732T,C23731T",,,,,,,,
C.36.2,,"nsp2:T371I,nsp3:Q191R","C1917T,A3291G",,,,,,,,
C.36.3,,"nsp6:L122S,S:A899S","T11337C,G24257T",,,,,4247.93,4829.57,3904.98,4936.24
C.36.3.1,,"nsp3:N1329,nsp4:D459N,nsp13:P529L","C6706T,G9929A,C17822T",nsp13:P529L,,,,0.0,0.0,42909.68,15284.09
C.37,Lambda,"nsp3:F1569V,nsp4:L438P","T7424G,T9867C",,,,,539.35,1020.0,279.09,562.81
C.37.1,Lambda,"nsp4:L438P,N:G214C","T9867C,G28913T",N:G214C,,,,540.32,1024.91,281.77,568.12
C.38,,"nsp3:T428I,nsp3:R1297I,N:E378Q","C4002T,G6609T,G29405C","N:E378Q,nsp3:T428I",,,,,,,
C.4,,"3CLpro:G15S,RdRp:Y32,S:T723,S:A1078S","G10097A,C13536T,C23731T,G24794T","S:A1078S,3CLpro:G15S",,,,,,,
C.5,,"nsp3:E92D,nsp3:Y718H","G2995T,T4871C",,,,,,,,
CA.1,Omicron,"S:T604I,ORF3a:G44R","C23373T,G25522A",S:T604I,,,,314.62,1345.67,0.0,0.0
CA.2,Omicron,"S:S494P,S:D1199N","T23042C,G25157A",S:D1199N,S:S494P,,,0.0,0.0,0.0,0.0
CA.3,Omicron,"nsp3:L825,N:M101I","C5192T,G28576C",N:M101I,,,,168.38,265.58,0.0,0.0
CA.3.1,Omicron,"N:M101I,N:V133","G28576C,T28672A",N:M101I,,,,309.01,572.74,0.0,0.0
CA.5,Omicron,"nsp3:L825,S:A260D,S:D1199N","C5192T,C22341A,G25157A","S:D1199N,S:A260D",,,,0.0,0.0,0.0,0.0
CA.6,Omicron,"nsp2:Y16H,nsp3:L825,S:D1199N","T851C,C5192T,G25157A",S:D1199N,,,,0.0,0.0,0.0,0.0
CA.7,Omicron,"nsp6:L207I,nsp13:N423","C11591A,T17505C",,,,,0.0,0.0,357.72,437.14
CB.1,Omicron,"nsp3:P822S,nsp8:N118S,nsp13:T481","C5183T,A12444G,G17679T",,,,,0.0,0.0,82.38,210.64
CC.1,Omicron,"nsp3:K384N,nsp3:F1327,N:F53","G3871T,T6700C,C28432T",,,,,0.0,0.0,110.53,230.52
CD.1,Omicron,"S:L84I,S:G446D,S:A688T","C21812A,G22899A,G23624A","S:L84I,S:A688T",S:G446D,,,0.0,0.0,0.0,0.0
CD.2,Omicron,"S:L84I,N:D144N","C21812A,G28703A","N:D144N,S:L84I",,,,0.0,0.0,0.0,0.0
CE.1,Omicron,"nsp13:T127N,S:R346I,ORF8:P93S","C16616A,G22599T,C28170T",,S:R346I,,,0.0,0.0,175.38,404.47
CF.1,Omicron,"nsp8:Q73,S:K97T","G12310A,A21852C",S:K97T,,,,0.0,0.0,0.0,0.0
CG.1,Omicron,"nsp3:S702F,ORF3a:L108V","C4824T,C25714G",,,,,0.0,0.0,119.28,281.13
CH.1,Omicron,"nsp3:V359,nsp3:Q380K,nsp3:S403L,nsp3:L623,nsp3:P822S,nsp8:N118S,nsp14:V182I,nsp16:Q28R,S:G257S,S:K444T","C3796T,C3857A,C3927T,C4586T,C5183T,A12444G,G18583A,A20741G,G22331A,A22893C",S:G257S,S:K444T,,,18.18,38.04,17.53,36.42
CH.1.1.1,Omicron,"nsp3:Q380K,nsp16:Q28R,S:N185D,S:P1143","C3857A,A20741G,A22115G,T24991A",S:N185D,,,,28.33,61.36,84.52,167.26
CH.1.1.10,Omicron,"nsp2:G262S,nsp4:I292","G1589A,C9430T",,,,,0.0,0.0,26.27,53.91
CH.1.1.11,Omicron,"nsp3:A358T,nsp14:V182I,nsp16:Q28R","G3791A,G18583A,A20741G",,,,,0.0,0.0,89.24,221.6
CH.1.1.13,Omicron,"GFL:Q139,ORF3a:S171L","G13441A,C25904T",,,,,0.0,0.0,0.0,0.0
CH.1.1.14,Omicron,"GFL:Q139,N:T362I","G13441A,C29358T",N:T362I,,,,0.0,0.0,0.0,0.0
CH.1.1.15,Omicron,"nsp4:S462,ORF7a:T61","C9940T,T27576C",,,,,0.0,0.0,151.34,402.8
CH.1.1.16,Omicron,"nsp6:F216,nsp16:Q28R,S:Q613H","C11620T,A20741G,G23401T",S:Q613H,,,,0.0,0.0,139.44,343.13
CH.1.1.17,Omicron,"nsp3:Q380K,nsp14:V182I,nsp16:Q28R,S:V83,M:S212G","C3857A,G18583A,A20741G,C21811T,A27156G,C29555T",M:S212G,,,,50.41,107.15,54.18,123.68
CH.1.1.18,Omicron,"nsp2:M404V,N:A155V","A2015G,C28737T",N:A155V,,,,0.0,0.0,0.0,0.0
CH.1.1.19,Omicron,"nsp3:Y18,nsp16:Q28R","C2773T,A20741G",,,,,0.0,0.0,267.84,463.77
CH.1.1.2,Omicron,"nsp3:Y1028C,S:T883I","A5802G,C24210T",,,,,78.56,197.05,101.31,256.5
CH.1.1.20,Omicron,"S:V83,S:D1165G","C21811T,A25056G,C27389T",S:D1165G,,,,0.0,0.0,0.0,0.0
CH.1.1.21,Omicron,"nsp13:A568,S:N481Y","A17940T,A23003T",,S:N481Y,,,0.0,0.0,0.0,0.0
CH.1.1.22,Omicron,"nsp13:V371,ORF6:K23I","T17349C,A27269T",ORF6:K23I,,,,0.0,0.0,0.0,0.0
CH.1.1.23,Omicron,"S:T323K,S:A1070","C22530A,A24772G",S:T323K,,,,0.0,0.0,0.0,0.0
CH.1.1.24,Omicron,"nsp2:I42,nsp3:T1319,nsp16:Q28R","T931C,T6676C,A20741G",,,,,0.0,0.0,23.88,49.19
CH.1.1.25,Omicron,"nsp2:S150L,nsp9:P57S","C1254T,C12854T",,,,,28.46,58.94,1075.74,1377.17
CH.1.1.26,Omicron,"ORF7a:T61,N:D341","T27576C,C29296T",,,,,0.0,0.0,0.0,0.0
CH.1.1.27,Omicron,"nsp2:S358L,nsp3:Q380K","C1878T,C3857A",,,,,0.0,0.0,0.0,0.0
CH.1.1.28,Omicron,"nsp3:D1031,nsp13:V169F,nsp16:Q28R","C5812T,G16741T,A20741G",,,,,0.0,0.0,117.81,313.58
CH.1.1.3,Omicron,"nsp16:Q28R,S:S255P","A20741G,T22325C",S:S255P,,,,0.0,0.0,0.0,0.0
CH.1.1.30,Omicron,"nsp13:N559,nsp16:Q28R,S:N925","C17913T,A20741G,C24337T",,,,,0.0,0.0,0.0,0.0
CH.1.1.32,Omicron,"nsp3:E156A,N:P80Q","A3186C,C28512A",N:P80Q,,,,0.0,0.0,0.0,0.0
CH.1.1.4,Omicron,"nsp3:V359,nsp14:V182I,S:D737,ORF7a:T61","C3796T,G18583A,T23773C,T27576C",,,,,0.0,0.0,154.04,327.57
CH.1.1.5,Omicron,"nsp13:A292,ORF3a:P104S","T17112C,C25702T",,,,,0.0,0.0,352.92,562.32
CH.1.1.6,Omicron,"nsp2:K158R,nsp3:P968L","A1278G,C5622T",,,,,0.0,0.0,142.71,276.14
CH.1.1.7,Omicron,"nsp1:F143C,nsp14:V182I","T693G,G18583A",,,,,0.0,0.0,0.0,0.0
CH.1.1.8,Omicron,"nsp8:I107,S:A846V","C12412T,C24099T",S:A846V,,,,0.0,0.0,244.36,438.18
CH.1.1.9,Omicron,"GFL:Q139,S:I1232V,N:N196","G13441A,A25256G,T28861C",,,,,0.0,0.0,0.0,0.0
CJ.1.2,Omicron,"nsp3:L1791F,nsp14:V182I","C8090T,G18583A",,,,,0.0,0.0,19.85,41.65
CJ.1.3,Omicron,"nsp3:V747,RdRp:I450","G4960A,C14790T",,,,,0.0,0.0,0.0,0.0
CK.1.2,Omicron,"nsp4:S34F,S:Q607","C8655T,G23383A",,,,,0.0,0.0,0.0,0.0
CK.1.3,Omicron,"nsp2:L274,nsp8:Q73,nsp13:T127N,S:F157L,S:G181V,S:K444N,M:L164,ORF7a:Y40,N:G19","C1627T,G12310A,C16616A,C22033A,G22104T,G22894T,C27012T,C27513T,A28330G","S:G181V,S:F157L",S:K444N,,,0.0,0.0,0.0,0.0
CK.1.4,Omicron,"S:K444N,ORF3a:S74,ORF3a:N144","G22894T,C25614T,C25824T",,S:K444N,,,1059.86,1358.92,108.4,278.02
CK.1.5,Omicron,"nsp4:D188,nsp6:M164V,RdRp:I837","C9118T,A11462G,C15951T",,,,,300.81,371.2,0.0,0.0
CK.2.1,Omicron,"S:K444N,E:V62F","G22894T,G26428T",,S:K444N,,,19.71,40.9,91.17,201.22
CK.2.1.1,Omicron,"nsp6:G9D,GFL:L133","G10998A,C13423T",,,,,195.11,616.95,280.08,584.56
CK.3,Omicron,"nsp8:Q73,S:K444N,ORF7a:T39I","G12310A,G22894T,C27509T",,S:K444N,,,0.0,0.0,0.0,0.0
CL.1,Omicron,"nsp13:N102S,N:A218S","A16541G,G28925T",N:A218S,,,,259.91,499.47,88.96,191.83
CL.1.1,Omicron,"3CLpro:T280,nsp13:N102S,S:K150E,S:P1162L","C10894T,A16541G,A22010G,C25047T","S:P1162L,S:K150E",,,,0.0,0.0,225.26,457.58
CL.1.2,Omicron,"nsp13:N102S,nsp13:N361,S:T883I,ORF8:F41C,N:A218S","A16541G,T17319C,C24210T,T28015G,G28925T",N:A218S,,,,0.0,0.0,0.0,0.0
CL.1.3,Omicron,"nsp4:G224,nsp13:N102S,nsp13:N361,S:S71F,S:F186,N:A218S","C9226T,A16541G,T17319C,C21774T,C22120T,G28925T","N:A218S,S:S71F",,,,0.0,0.0,0.0,0.0
CM.1,Omicron,"S:N17S,N:R93","A21612G,C28550A",S:N17S,,,,0.0,0.0,0.0,0.0
CM.10,Omicron,"nsp2:R222,nsp2:T547I,nsp3:I896T,nsp3:M1351V,nsp3:T1356I,nsp3:T1830I,nsp4:A146V,3CLpro:T45,nsp7:Q63R,nsp13:T481M,nsp14:N71,S:M153T,S:N164K,S:H245N,S:G257D,S:K444R,S:V445A,S:N450D,S:L452M,S:E484K,S:E484G,ORF3a:L140F,N:R93","C1471T,C2445T,T5406C,A6770G,C6786T,C8208T,C8991T,C10189T,A12030G,C17678T,C18252T,T22020C,T22054G,C22295A,G22332A,A22893G,T22896C,A22910G,C22916A,G23012A,A23013G,C25810T,C28550A","nsp13:T481M,S:N164K,S:G257D,S:H245N,S:M153T","S:L452M,S:K444R,S:N450D,S:E484K,S:V445A,S:E484G",,,0.0,0.0,0.0,0.0
CM.12,Omicron,"nsp2:D464,nsp4:A146V,S:E484G","C2197T,C8991T,A23013G",,S:E484G,,,0.0,0.0,0.0,0.0
CM.2,Omicron,"nsp2:R222,nsp2:T547I,nsp3:I896T,nsp3:S1285F,nsp3:T1830I,nsp4:A146V,3CLpro:T45,nsp7:Q63R,nsp13:T481M,nsp14:N71,S:M153T,S:N164K,S:G257D,S:E484G,S:L1203,ORF3a:L140F,N:R93","C1471T,C2445T,T5406C,C6573T,C8208T,C8991T,C10189T,A12030G,C17678T,C18252T,T22020C,T22054G,G22332A,A23013G,T25171C,C25810T,C28550A","nsp13:T481M,S:N164K,S:G257D,S:M153T",S:E484G,,,0.0,0.0,0.0,0.0
CM.3,Omicron,"nsp2:R222,nsp3:I896T,nsp3:T1830I,nsp4:A146V,3CLpro:T45,nsp7:Q63R,nsp13:T481M,S:G257D,S:G485D,S:L1203,ORF3a:L140F,N:R93","C1471T,T5406C,C8208T,C8991T,C10189T,A12030G,C17678T,G22332A,G23016A,T25171C,C25810T,C28550A","nsp13:T481M,S:G257D",S:G485D,,,0.0,0.0,0.0,0.0
CM.4,Omicron,"M:F100,N:R93","C26822T,C28550A",,,,,0.0,0.0,0.0,0.0
CM.4.1,Omicron,"nsp3:I896T,3CLpro:T45,RdRp:D155G,S:G257D,S:E484G,M:F100,N:R93","T5406C,C10189T,A13904G,G22332A,A23013G,C26822T,C28550A",S:G257D,S:E484G,,,0.0,0.0,0.0,0.0
CM.5,Omicron,"nsp2:R222,nsp2:T547I,nsp3:I896T,nsp3:T1830I,3CLpro:T45,3CLpro:L250,nsp7:Q63R,nsp13:T481M,S:M153T,S:N164K,S:G257D,S:E484G,ORF3a:L140F,N:R93","C1471T,C2445T,T5406C,C8208T,C10189T,C10802T,A12030G,C17678T,T22020C,T22054G,G22332A,A23013G,C25810T,C28550A","nsp13:T481M,S:N164K,S:G257D,S:M153T",S:E484G,,,0.0,0.0,0.0,0.0
CM.5.1,Omicron,"S:Q675R,N:R93","A23586G,C28550A",S:Q675R,,,,0.0,0.0,0.0,0.0
CM.5.2,Omicron,"nsp2:R222,nsp2:T547I,nsp3:I896T,nsp3:T1356I,nsp3:T1830I,nsp4:A146V,3CLpro:T45,3CLpro:L250,nsp13:T481M,S:N164K,S:G257D,S:G485D,ORF3a:L140F,N:R93","C1471T,C2445T,T5406C,C6786T,C8208T,C8991T,C10189T,C10802T,C17678T,T22054G,G22332A,G23016A,C25810T,C28550A","nsp13:T481M,S:N164K,S:G257D",S:G485D,,,0.0,0.0,0.0,0.0
CM.6,Omicron,"nsp1:G30A,N:R93","G354C,C28550A",,,,,0.0,0.0,0.0,0.0
CM.6.1,Omicron,"nsp2:E570G,nsp3:T1251I","A2514G,C6471T",,,,,0.0,0.0,0.0,0.0
CM.8.1,Omicron,"nsp3:D821,nsp3:I896T,nsp3:T1830I,3CLpro:T45,nsp7:Q63R,nsp13:T481M,S:M153T,S:N164K,S:G257D,ORF3a:L140F,N:R93","T5182C,T5406C,C8208T,C10189T,A12030G,C17678T,T22020C,T22054G,G22332A,C25810T,C28550A","nsp13:T481M,S:N164K,S:G257D,S:M153T",,,,168.32,490.99,0.0,0.0
CM.8.1.2,Omicron,"nsp3:D821,RdRp:T394,nsp14:C382","T5182C,G14622A,C19185T",,,,,0.0,0.0,0.0,0.0
CM.8.1.3,Omicron,"RdRp:T394,S:Y1272H","G14622A,T25376C",S:Y1272H,,,,0.0,0.0,0.0,0.0
CM.8.1.4,Omicron,"RdRp:T394,nsp14:N266D","G14622A,A18835G",,,,,0.0,0.0,0.0,0.0
CM.9,Omicron,"S:S256L,S:L1203","C22329T,T25171C",S:S256L,,,,0.0,0.0,0.0,0.0
CN.1,Omicron,"nsp3:N855,nsp13:T127N,ORF3a:H78","C5284T,C16616A,C25626T",,,,,112.39,249.39,232.63,522.47
CN.2,Omicron,"nsp13:K569,nsp14:G102,S:Y28H","A17943G,T18345C,T21644C",S:Y28H,,,,0.0,0.0,0.0,0.0
CP.1,Omicron,"ORF6:D53,ORF8:V116","T27360C,GTT28239G",,,,,30.76,65.56,30.83,65.81
CP.1.1,Omicron,ORF6:D53,"T27360C,C27389T",,,,,0.0,0.0,0.0,0.0
CP.1.2,Omicron,"nsp2:N8,ORF6:D53,ORF8:V116","C829T,T27360C,GTT28239G",,,,,0.0,0.0,0.0,0.0
CP.1.3,Omicron,"nsp7:E74,ORF6:D53","A12064G,T27360C",,,,,0.0,0.0,0.0,0.0
CP.2,Omicron,"RdRp:A529T,S:N334K","G15025A,C22564A",,S:N334K,,,0.0,0.0,0.0,0.0
CP.3,Omicron,"S:L141,S:N460Y","G21985A,A22940T",,S:N460Y,,,0.0,0.0,0.0,0.0
CP.4,Omicron,"GFL:T101,S:I770V","A13327G,A23870G",S:I770V,,,,0.0,0.0,0.0,0.0
CP.5,Omicron,"nsp8:Q73,nsp13:T127N,S:C1247F","G12310A,C16616A,G25302T",S:C1247F,,,,0.0,0.0,0.0,0.0
CP.6,Omicron,"nsp3:L1309,S:V1264L,ORF8:V116","A6646G,G25352T,ATT26484A,GTT28239G",S:V1264L,,,,0.0,0.0,0.0,0.0
CP.8,Omicron,"nsp8:Q73,nsp13:T127N,nsp14:D415G,N:N126","G12310A,C16616A,A19283G,C28651T",,,,,0.0,0.0,0.0,0.0
CQ.1.1,Omicron,"S:R682,N:N192","G23608T,C28849T",,,,,0.0,0.0,26.35,55.62
CQ.2,Omicron,"nsp3:H323Y,GFL:D106,S:P209L,S:R682","C3686T,C13342T,C22188T,G23608T",S:P209L,,,,441.5,506.71,0.0,0.0
CR.1.1,Omicron,"nsp13:L240,S:V62I","C16954T,G21746A",S:V62I,,,,438.01,839.74,0.0,0.0
CR.1.3,Omicron,"nsp3:D1774G,RdRp:G839,S:K444R","A8040G,G15957T,A22893G",nsp3:D1774G,S:K444R,,,0.0,0.0,0.0,0.0
CV.1,Omicron,"nsp3:V732A,nsp3:P1143","T4914C,T6148A",nsp3:V732A,,,,0.0,0.0,156.89,313.73
CV.2,Omicron,"nsp2:G334E,nsp13:Y224C","G1806A,A16907G",nsp13:Y224C,,,,0.0,0.0,0.0,0.0
CZ.2,Omicron,"nsp14:V115A,S:A688V","T18383C,C23625T",S:A688V,,,,0.0,0.0,0.0,0.0
D.2,,"nsp2:I120F,S:Q613","A1163T,G23401A",,,,,,,,
D.3,,"nsp2:I120F,S:C662","A1163T,T23548C",,,,,,,,
DA.1,Omicron,"nsp1:I71,S:T430I","C478T,C22851T",S:T430I,,,,0.0,0.0,0.0,0.0
DB.1,Omicron,"nsp2:R222,nsp2:N631,S:L296","C1471T,T2698C,C22450T",,,,,0.0,0.0,206.04,291.15
DB.2,Omicron,"nsp2:N631,S:A262S,ORF7b:H42Y","T2698C,G22346T,C27879T",S:A262S,,,,0.0,0.0,0.0,0.0
DC.1,Omicron,"S:N460S,S:N658S,N:Q39","A22941G,A23535G,A28390G",S:N658S,S:N460S,,,0.0,0.0,0.0,0.0
DE.1,Omicron,"nsp2:S122F,S:A694V,ORF7a:F101","C1170T,C23643T,T27696C",S:A694V,,,,0.0,0.0,0.0,0.0
DF.1,Omicron,"RdRp:R118,N:P383","T13794C,G29422T",,,,,95.92,203.81,163.37,277.64
DF.1.1,Omicron,"nsp2:R27C,RdRp:R118","C884T,T13794C",,,,,94.97,201.76,159.94,273.39
DG.1,Omicron,"nsp3:N1890,GFL:L133,E:V62F","C8389T,C13423T,G26428T",,,,,188.16,588.04,285.19,593.05
DH.1,Omicron,"nsp3:A1381T,nsp3:S1913G","G6860A,A8456G",,,,,0.0,0.0,0.0,0.0
DJ.1,Omicron,"nsp6:N174,S:K444N","C11494T,G22894T",,S:K444N,,,0.0,0.0,0.0,0.0
DJ.1.1,Omicron,"nsp6:N174,S:F65","C11494T,C21757T",,,,,0.0,0.0,0.0,0.0
DJ.1.1.1,Omicron,"S:K147N,N:T265S","A22003T,A29066T","N:T265S,S:K147N",,,,0.0,0.0,0.0,0.0
DK.1,Omicron,"nsp2:S36Y,nsp3:A991T","C912A,G5690A",,,,,0.0,0.0,0.0,0.0
DL.1,Omicron,"3CLpro:H246Y,nsp14:H330,S:Q677H","C10790T,C19029T,G23593T","S:Q677H,3CLpro:H246Y",,,,0.0,0.0,0.0,0.0
DM.1,Omicron,"nsp14:F286,S:A348S","T18897C,G22604T",,S:A348S,,,0.0,0.0,0.0,0.0
DN.1.1,Omicron,"nsp15:P262L,ORF3a:Y206","C20405T,C26010T",,,,,18.53,38.79,12.69,25.77
DN.1.1.1,Omicron,"nsp2:V541I,nsp3:N1934S","G2426A,A8520G",,,,,0.0,0.0,0.0,0.0
DN.1.1.2,Omicron,"nsp1:G146,S:P479L","C703T,C22998T",,S:P479L,,,0.0,0.0,0.0,0.0
DN.1.1.3,Omicron,"S:K147N,ORF3a:L41,ORF3a:Y206","A22003T,C25515T,C26010T",S:K147N,,,,0.0,0.0,0.0,0.0
DN.1.1.4,Omicron,"S:N481S,ORF3a:Y206","A23004G,C26010T",,S:N481S,,,0.0,0.0,0.0,0.0
DN.2,Omicron,"nsp3:L1357,nsp13:I480,nsp15:P262L","A6790G,C17676T,C20405T",,,,,188.39,578.04,0.0,0.0
DN.3,Omicron,"nsp3:V207L,nsp6:V286I","G3338T,G11828A",,,,,0.0,0.0,0.0,0.0
DN.3.1,Omicron,"nsp15:P262L,S:K182E","C20405T,A22106G",S:K182E,,,,0.0,0.0,0.0,0.0
DP.1,Omicron,"nsp3:L151F,S:A352S,N:Y360","C3170T,G22616T,C29353T",,S:A352S,,,0.0,0.0,0.0,0.0
DQ.1,Omicron,"S:K147N,S:V1061","A22003T,C24745T",S:K147N,,,,0.0,0.0,211.75,441.08
DR.1,Omicron,"RdRp:V557,S:M153I","A15111G,G22021T",S:M153I,,,,179.48,493.35,0.0,0.0
DR.2,Omicron,"nsp3:I896,nsp6:S163,RdRp:V557","C5407T,C11461T,A15111G",,,,,147.51,417.44,0.0,0.0
DS.1,Omicron,"nsp3:S1485,3CLpro:F223L,nsp6:M58I,nsp15:P205,ORF3a:T229I","T7174C,T10721C,G11146T,C20235T,C26078T",3CLpro:F223L,,,,0.0,0.0,0.0,0.0
DS.2,Omicron,"3CLpro:F223L,nsp6:M58I,nsp14:H26Y,ORF3a:T229I","T10721C,G11146T,C18115T,C26078T",3CLpro:F223L,,,,0.0,0.0,204.69,375.56
DS.3,Omicron,"3CLpro:F223L,nsp6:M58I,ORF3a:G254V","T10721C,G11146T,G26153T","ORF3a:G254V,3CLpro:F223L",,,,0.0,0.0,6318.9,4651.91
DT.1,Omicron,"nsp3:L79,nsp13:M233I,nsp13:N268S,S:M153I,S:S494P,N:P13,N:E136D","T2954C,G16935A,A17039G,G22021A,T23042C,C28312T,G28681T","S:M153I,nsp13:N268S,N:E136D",S:S494P,,,0.0,0.0,0.0,0.0
DT.2,Omicron,"nsp13:N268S,S:M153I,S:T547K","A17039G,G22021A,C23202A","S:M153I,nsp13:N268S,S:T547K",,,,241.58,702.75,0.0,0.0
DT.3,Omicron,"nsp13:N268S,S:M153I,S:L176F","A17039G,G22021A,C22088T","S:M153I,nsp13:N268S,S:L176F",,,,0.0,0.0,0.0,0.0
DU.1,Omicron,"nsp4:S483,S:E1144Q","T10003C,G24992C",S:E1144Q,,,,0.0,0.0,137.51,355.34
DV.1,Omicron,"nsp16:Q28R,S:L176F,S:P1143","A20741G,C22088T,T24991A",S:L176F,,,,0.0,0.0,99.07,245.59
DV.1.1,Omicron,"S:P1143,N:T265I","T24991A,C29067T",N:T265I,,,,0.0,0.0,102.11,258.01
DV.2,Omicron,"S:I569V,S:P1143","A23267G,T24991A",S:I569V,,,,0.0,0.0,0.0,0.0
DV.3,Omicron,"nsp2:E197K,RdRp:D40,S:P1143","G1394A,T13560C,T24991A",,,,,0.0,0.0,191.36,340.72
DV.3.1,Omicron,"RdRp:D40,RdRp:V848I,S:P1143","T13560C,G15982A,T24991A",,,,,0.0,0.0,0.0,0.0
DV.4,Omicron,"nsp2:A247V,S:I714V","C1545T,A23702G",S:I714V,,,,0.0,0.0,0.0,0.0
DV.6,Omicron,"RdRp:D717,S:P1143","T15591C,T24991A",,,,,99.9,188.18,130.97,248.89
DV.6.1,Omicron,"nsp7:D77,RdRp:D717,S:Q613H,ORF3a:A110V","C12073T,T15591C,G23401T,C25721T",S:Q613H,,,,0.0,0.0,0.0,0.0
DV.6.2,Omicron,"RdRp:D717,nsp13:T599I,S:P1143","T15591C,C18032T,T24991A",,,,,0.0,0.0,0.0,0.0
DV.7,Omicron,"3CLpro:A285V,nsp16:Q28R,S:L858I,S:P1143","C10908T,A20741G,C24134A,T24991A",S:L858I,,,,15.49,23.94,25.96,49.34
DV.7.1.1,Omicron,"nsp2:T474,nsp3:I439,nsp3:L561,3CLpro:K90R,RdRp:A529V,nsp15:K89R,S:N185D,S:N679S,S:P1143,ORF3a:A72T,ORF3a:A110V,ORF3a:Y189","C2227T,T4036A,T4402A,A10323G,C15026T,A19886G,A22115G,A23598G,T24991A,G25606A,C25721T,T25959C","3CLpro:K90R,S:N185D,S:N679S",,,,0.0,0.0,0.0,0.0
DV.7.1.2,Omicron,"nsp2:T474,nsp9:A22V,ORF3a:A72T","C2227T,C12750T,G25606A",,,,,0.0,0.0,47.21,105.59
DV.7.1.3,Omicron,"nsp2:T474,nsp3:I439,nsp3:L561,nsp4:L471,RdRp:A529V,S:P1143,ORF3a:A72T","C2227T,T4036A,T4402A,C9967T,C15026T,T24991A,G25606A",,,,,0.0,0.0,0.0,0.0
DV.7.1.4,Omicron,"nsp2:T474,ORF3a:A72T,ORF3a:A110V,ORF3a:Y189,ORF8:P36","C2227T,G25606A,C25721T,T25959C,G28001T",,,,,0.0,0.0,0.0,0.0
DV.7.1.5,Omicron,"nsp2:T474,nsp3:I439,ORF3a:A72T,N:T135A","C2227T,T4036A,G25606A,A28676G",N:T135A,,,,0.0,0.0,72.04,270.12
DV.7.2,Omicron,"nsp1:G146,nsp2:T474,S:N185D,S:L858I,ORF3a:A72T","C703T,C2227T,A22115G,C24134A,G25606A","S:N185D,S:L858I",,,,0.0,0.0,0.0,0.0
DV.8,Omicron,"nsp3:L561,nsp3:N1860,nsp14:N521","T4402A,C8299T,C19602T",,,,,0.0,0.0,0.0,0.0
DY.1,Omicron,"nsp4:F24,nsp13:Y324,S:A570S","C8626T,T17208C,G23270T",S:A570S,,,,0.0,0.0,251513.31,14217.6
DY.2,Omicron,"nsp6:I284,N:Q241K","C11824T,C28994A",N:Q241K,,,,0.0,0.0,427.96,1333.78
DY.3,Omicron,"nsp3:N618,nsp3:T970M,nsp13:Y324","C4573T,C5628T,T17208C",,,,,0.0,0.0,559.33,2591.21
DY.4,Omicron,"nsp2:L635,nsp4:F24,nsp13:Y324,nsp16:T35I","C2710T,C8626T,T17208C,C20762T",,,,,0.0,0.0,13934.36,9643.77
EA.1,Omicron,"nsp3:T1429,ORF8:C102F","C7006T,G28198T",,,,,0.0,0.0,120.34,299.5
EA.2,Omicron,"nsp3:T1429,S:T470I","C7006T,C22971T",,S:T470I,,,0.0,0.0,0.0,0.0
EB.1,Omicron,"nsp3:I707M,RdRp:E61,N:Y86","A4840G,A13623G,C28531T",,,,,334.76,672.48,0.0,0.0
EC.1.1,Omicron,"nsp2:E172A,nsp3:Y107,S:H146L","A1320C,C3040T,A21999T",S:H146L,,,,179.48,543.35,223.63,314.43
ED.1,Omicron,"nsp2:C253S,ORF3a:L108F,ORF8:V62","T1562A,C25714T,G28079T",,,,,0.0,0.0,0.0,0.0
ED.2,Omicron,"nsp3:D110Y,nsp13:M233I,nsp13:N268S","G3047T,G16935A,A17039G",nsp13:N268S,,,,386.53,452.29,0.0,0.0
ED.3,Omicron,"nsp3:H1274,nsp13:N268S,S:D843N","C6541T,A17039G,G24089A","S:D843N,nsp13:N268S",,,,225.61,460.58,0.0,0.0
EE.1,Omicron,"N:H300,N:T366I","T29173C,C29370T",N:T366I,,,,29.94,62.56,0.0,0.0
EE.2,Omicron,"nsp14:V14I,N:H300","G18079A,T29173C",,,,,1050.91,676.19,0.0,0.0
EE.3,Omicron,"S:I312,N:H300","C22498T,T29173C",,,,,0.0,0.0,0.0,0.0
EE.4,Omicron,"nsp3:L79,RdRp:Y273H,nsp13:M233I,nsp13:N268S,S:Q52H,N:P13,N:H300","T2954C,T14257C,G16935A,A17039G,G21718T,C28312T,T29173C","S:Q52H,nsp13:N268S",,,,0.0,0.0,0.0,0.0
EE.5,Omicron,"S:N185Y,N:H300","A22115T,T29173C",S:N185Y,,,,250.93,472.73,0.0,0.0
EF.1,Omicron,"nsp2:Q376K,nsp3:L79,nsp3:F1107,RdRp:Y273H,nsp13:M233I,nsp13:N268S,E:V62F,N:P13","C1931A,T2954C,C6040T,T14257C,G16935A,A17039G,G26428T,C28312T",nsp13:N268S,,,,26.11,54.0,147.75,292.21
EF.1.1.1,Omicron,"nsp3:D1688,E:V62F","T7783C,G26428T",,,,,19.63,41.31,184.72,356.54
EF.1.2,Omicron,"nsp3:F1107,RdRp:D684,nsp13:N268S,S:Y508,E:V62F","C6040T,T15492C,A17039G,C23086T,G26428T",nsp13:N268S,,,,0.0,0.0,341.99,530.74
EF.2,Omicron,"RdRp:V128I,nsp13:N268S,E:V62F","G13822A,A17039G,G26428T","nsp13:N268S,RdRp:V128I",,,,0.0,0.0,188.86,565.17
EF.3,Omicron,"S:S704T,E:V62F","T23672A,G26428T",S:S704T,,,,0.0,0.0,0.0,0.0
EG.1,Omicron,"S:Q613H,N:L219F","G23401T,C28928T","S:Q613H,N:L219F",,,,22.18,22.94,16.44,34.3
EG.1.2,Omicron,"S:Q613H,ORF7b:H42Y,N:L219F","G23401T,C27879T,C28928T","S:Q613H,N:L219F",,,,0.0,0.0,103.32,350.0
EG.1.3,Omicron,"nsp3:V1298,nsp13:T214,nsp14:T215,S:Q613H,N:L219F","A6613G,A16878T,A18684G,G23401T,C28928T","S:Q613H,N:L219F",,,,0.0,0.0,211.17,483.88
EG.1.4,Omicron,"nsp3:S1682F,S:Q613H,N:L219F","C7764T,G23401T,C28928T","S:Q613H,N:L219F",,,,0.0,0.0,142.59,506.73
EG.1.5,Omicron,"S:S98F,N:L219F","C21855T,C28928T","N:L219F,S:S98F",,,,0.0,0.0,0.0,0.0
EG.1.6,Omicron,"nsp13:T214,S:Q613H,N:L219F","A16878T,G23401T,G26235T,C28928T","S:Q613H,N:L219F",,,,0.0,0.0,119.79,207.57
EG.1.7,Omicron,"S:E156V,S:Q613H","A22029T,G23401T","S:Q613H,S:E156V",,,,0.0,0.0,0.0,0.0
EG.1.8,Omicron,"nsp6:Q290,RdRp:D170G","G11842A,A13949G",,,,,0.0,0.0,0.0,0.0
EG.10,Omicron,"nsp13:T104,nsp13:T214,nsp16:A199,S:A344T,ORF7a:G38","T16548G,A16878T,G21255T,G22592A,A27507C",,S:A344T,,,25.83,54.9,26.11,50.54
EG.10.1,Omicron,"nsp13:C5,nsp13:T104","T16251C,T16548G",,,,,35.86,96.73,0.0,0.0
EG.10.1.1,Omicron,"nsp3:V1885L,nsp6:V114I","G8372T,G11312A",,,,,44.22,94.67,35.69,66.02
EG.11,Omicron,"E:V25,ORF7a:L86","A26319G,C27649T",,,,,0.0,0.0,0.0,0.0
EG.12,Omicron,"nsp9:T19I,N:R195T","C12741T,G28857C",,,,,0.0,0.0,0.0,0.0
EG.13,Omicron,"nsp2:K618N,nsp13:T214,ORF7a:G38","G2659T,A16878T,A27507C",,,,,52.71,118.86,0.0,0.0
EG.14,Omicron,"nsp13:T214,nsp13:K460R,ORF3a:A54V","A16878T,A17615G,C25553T",,,,,0.0,0.0,0.0,0.0
EG.3,Omicron,"nsp4:L15F,N:L219F","C8597T,C28928T",N:L219F,,,,0.0,0.0,306.89,478.65
EG.4,Omicron,"nsp13:T214,N:N126","A16878T,C28651T",,,,,40.32,79.23,71.93,208.45
EG.4.1,Omicron,"S:I870V,N:A119S,N:N126","A24170G,G28628T,C28651T","N:A119S,S:I870V",,,,0.0,0.0,0.0,0.0
EG.4.3,Omicron,"S:Q613H,N:N126","G23401C,C28651T",S:Q613H,,,,0.0,0.0,0.0,0.0
EG.4.4,Omicron,"nsp3:Y647C,RdRp:H882Y","A4659G,C16084T",,,,,0.0,0.0,0.0,0.0
EG.4.5,Omicron,"nsp13:T214,S:T478R,N:N126","A16878T,C22995G,C28651T",,S:T478R,,,0.0,0.0,0.0,0.0
EG.5.1.1,Omicron,"nsp2:A510V,nsp3:H1274,RdRp:D63N,nsp13:T214,S:Q52H,ORF3a:S60,ORF10:S23F","C2334T,C6541T,G13627A,A16878T,G21718T,C25572T,C29625T","RdRp:D63N,S:Q52H",,,,12.22,24.59,11.91,24.62
EG.5.1.10,Omicron,"nsp2:A510V,nsp3:G301,nsp6:I189V,nsp13:T214,S:Q52H,S:F306,ORF7a:G38,ORF10:S23F","C2334T,C3622T,A11537G,A16878T,G21718T,C22480T,A27507C,C29625T",S:Q52H,,,,0.0,0.0,0.0,0.0
EG.5.1.12,Omicron,"S:Q52H,N:G212,ORF10:S23F","G21718T,C28909T,C29625T",S:Q52H,,,,0.0,0.0,0.0,0.0
EG.5.1.13,Omicron,"nsp8:P116,S:Q52H","C12439T,G21718T",S:Q52H,,,,6.57,12.72,17.71,19.17
EG.5.1.14,Omicron,"RdRp:F859,nsp14:L495","C16017T,C19524T",,,,,8.47,16.61,0.0,0.0
EG.5.1.15,Omicron,"nsp2:T573I,S:Q52H","C2523T,G21718T",S:Q52H,,,,28.32,63.03,0.0,0.0
EG.5.1.16,Omicron,"nsp16:A34V,S:Q52H","C20759T,G21718T",S:Q52H,,,,28.99,55.87,0.0,0.0
EG.5.1.18,Omicron,"nsp4:G239S,ORF3a:S220I","G9269A,G26051T",,,,,0.0,0.0,0.0,0.0
EG.5.1.19,Omicron,"S:Q52H,ORF3a:M260K","G21718T,T26171A","S:Q52H,ORF3a:M260K",,,,33.24,71.42,14.97,32.24
EG.5.1.2,Omicron,"nsp14:V120I,S:Q52H","G18397A,G21718T",S:Q52H,,,,0.0,0.0,0.0,0.0
EG.5.1.3,Omicron,"nsp2:R362C,S:C336","C1889T,C22570T",,,,,15.86,31.03,22.68,40.4
EG.5.1.4,Omicron,"nsp16:K160R,S:Q52H,ORF3a:P240L","A21137G,G21718T,C26111T","S:Q52H,ORF3a:P240L",,,,15.85,33.33,9.31,18.34
EG.5.1.5,Omicron,"3CLpro:L30I,nsp13:T351I,nsp15:L298V","C10142A,C17288T,T20512G",,,,,0.0,0.0,45.97,78.12
EG.5.1.6,Omicron,"nsp3:S1039L,S:Q52H","C5835T,G21718T",S:Q52H,,,,6.98,13.55,8.15,16.0
EG.5.1.7,Omicron,S:K278N,A22396T,S:K278N,,,,0.0,0.0,7.51,14.76
EG.5.1.8,Omicron,"nsp8:A3,S:Q52H","C12100G,G21718T",S:Q52H,,,,12.19,24.51,39.07,80.01
EG.5.1.9,Omicron,"nsp4:N131,S:Q52H,S:L176F","C8947T,G21718T,C22088T","S:Q52H,S:L176F",,,,87.98,138.03,0.0,0.0
EG.5.2,Omicron,"nsp3:V811,N:L161F","T5152C,C28754T",N:L161F,,,,20.01,43.98,16.56,35.81
EG.5.2.1,Omicron,"nsp2:N9,nsp3:H295Y,nsp3:V811,nsp6:V182,ORF3a:I118V","C832T,C3602T,T5152C,C11518T,A25744G",,,,,18.53,40.24,0.0,0.0
EG.5.2.2,Omicron,"nsp2:A510V,nsp3:V811,nsp3:L1857,nsp9:Y32,RdRp:T248I,nsp13:T214,S:F456L,ORF7a:G38,N:L161F","C2334T,T5152C,C8290T,C12781T,C14183T,A16878T,T22930A,A27507C,C28754T",N:L161F,S:F456L,,,0.0,0.0,0.0,0.0
EG.5.2.3,Omicron,"S:N1178D,N:L161F","A25094G,C28754T","S:N1178D,N:L161F",,,,0.0,0.0,0.0,0.0
EG.6.1,Omicron,"nsp13:V510,ORF6:Y49H","C17766T,T27346C",,,,,7.71,15.26,8.45,16.69
EG.6.1.1,Omicron,"S:L242I,ORF7b:H42","C22286A,C27881T",S:L242I,,,,0.0,0.0,0.0,0.0
EG.6.1.2,Omicron,"S:V705I,ORF6:Y49H","G23675A,T27346C",S:V705I,,,,0.0,0.0,0.0,0.0
EG.7,Omicron,"nsp3:N1713S,nsp4:C88,nsp14:A138V","A7857G,C8818T,C18452T",,,,,0.0,0.0,0.0,0.0
EG.8,Omicron,"nsp3:S1485F,nsp13:T214","C7173T,A16878T",,,,,0.0,0.0,0.0,0.0
EG.9.1,Omicron,"nsp13:N46S,N:D358","A16373G,C29347T",nsp13:N46S,,,,0.0,0.0,0.0,0.0
EH.1,Omicron,"nsp14:V263,S:S247N,S:Y248S","C18828T,G22302A,A22305C","S:S247N,S:Y248S",,,,0.0,0.0,0.0,0.0
EJ.1,Omicron,"nsp6:M58I,S:I1225V","G11146T,A25235G",S:I1225V,,,,0.0,0.0,0.0,0.0
EJ.2,Omicron,"GFL:T102I,nsp15:P205,ORF3a:T229I","C13329T,C20235T,C26078T",,,,,0.0,0.0,0.0,0.0
EK.2,Omicron,"nsp13:D101,S:F106","T16539C,T21880C",,,,,148.87,623.4,0.0,0.0
EK.2.1,Omicron,"nsp13:D101,ORF8:V62","T16539C,G28079T",,,,,163.42,414.29,0.0,0.0
EK.3,Omicron,"nsp15:T166,ORF8:V62","A20118G,G28079T",,,,,0.0,0.0,128.9,308.63
EK.4,Omicron,"S:F106,S:Q675K","T21880C,C23585A",S:Q675K,,,,0.0,0.0,0.0,0.0
EL.1,Omicron,"nsp2:N630,nsp9:Y32,S:Q675H","C2695T,C12781T,G23587T",S:Q675H,,,,0.0,0.0,90.66,170.58
EM.1,Omicron,"RdRp:V257F,nsp13:A296,S:R214L","G14209T,T17124C,G22203T",S:R214L,,,,0.0,0.0,110.44,208.06
EN.1,Omicron,"nsp3:L79,S:V1264L,ORF3a:M5T","T2954C,G25352T,T25406C",S:V1264L,,,,0.0,0.0,17.09,35.24
EQ.1,Omicron,"S:Q14H,N:D98","G21604T,C28567T",S:Q14H,,,,0.0,0.0,0.0,0.0
ER.1,Omicron,"nsp2:S36,nsp13:N268S","C913A,A17039G",nsp13:N268S,,,,0.0,0.0,97.24,200.21
ER.1.1,Omicron,"nsp2:S36,nsp3:T763","C913A,G5008T",,,,,0.0,0.0,93.06,232.88
ES.1,Omicron,"nsp2:Q376K,nsp3:L79,nsp6:L260F,RdRp:Y273H,nsp13:M233I,nsp13:N268S,S:K147I,S:K444T,N:T135I","C1931A,T2954C,C11750T,T14257C,G16935A,A17039G,A22002T,A22893C,C28677T","nsp13:N268S,N:T135I,S:K147I",S:K444T,,,1070.55,1266.87,0.0,0.0
ET.1,Omicron,"nsp3:A994T,nsp4:N355","G5699A,T9619C",,,,,0.0,0.0,602.82,802.24
EU.1,Omicron,"nsp2:L39,S:P521S","C920T,C23123T",S:P521S,,,,75.17,162.37,97.0,175.28
EU.1.1,Omicron,"nsp2:L39,S:I410V","C920T,A22790G",S:I410V,,,,118.07,174.19,89.2,287.03
EU.1.1.1,Omicron,"nsp2:L39,S:Y28","C920T,C21646T",,,,,0.0,0.0,36.58,82.52
EU.1.1.2,Omicron,"S:P521S,S:A1070S","C23123T,G24770T","S:A1070S,S:P521S",,,,0.0,0.0,0.0,0.0
EU.1.1.3,Omicron,"nsp2:L39,S:S116,ORF8:A51V","C920T,C21910A,C28045T",,,,,0.0,0.0,48.59,90.54
EV.1,Omicron,"GFL:Q36,S:G446R","A13132G,G22898C",,S:G446R,,,0.0,0.0,0.0,0.0
EW.1,Omicron,"nsp3:D1638,nsp4:L18F,S:P251L,S:N856S","T7633C,C8606T,C22314T,A24129G","S:N856S,S:P251L",,,,0.0,0.0,0.0,0.0
EW.2,Omicron,"nsp15:N28S,S:N856S","A19703G,A24129G",S:N856S,,,,0.0,0.0,0.0,0.0
EY.1,Omicron,"nsp3:F1107,nsp3:D1688,S:Q613H,E:V62F","C6040T,T7783C,G23401T,G26428T",S:Q613H,,,,0.0,0.0,0.0,0.0
EZ.1,Omicron,"RdRp:P328,E:S16","A14424C,C26292T",,,,,257.61,457.87,113.04,292.29
FA.1,Omicron,"nsp2:Q376K,nsp3:L79,nsp6:L260F,RdRp:Y273H,nsp13:D59,nsp13:M233I,nsp13:N268S,S:T478R,N:P13,N:E136D","C1931A,T2954C,C11750T,T14257C,T16413C,G16935A,A17039G,C22995G,C28312T,G28681T","nsp13:N268S,N:E136D",S:T478R,,,0.0,0.0,0.0,0.0
FA.2,Omicron,"nsp13:D59,ORF3a:D222","T16413C,C26058T",,,,,0.0,0.0,0.0,0.0
FB.2,Omicron,"nsp3:G175D,3CLpro:Y239","G3243A,T10771C",,,,,0.0,0.0,0.0,0.0
FD.1,Omicron,"nsp3:A655V,RdRp:G839,ORF7a:P99L","C4683T,G15957T,C27689T",,,,,27.44,58.21,55.1,155.8
FD.1.1,Omicron,"nsp9:T34I,RdRp:G839","C12786T,G15957T",,,,,24.69,51.1,0.0,0.0
FD.2,Omicron,"nsp2:G339S,RdRp:G839","G1820A,G15957T",,,,,22.49,47.44,0.0,0.0
FD.3,Omicron,"nsp3:T1928,S:A348S","T8503C,G22604T",,S:A348S,,,0.0,0.0,0.0,0.0
FD.4,Omicron,"3CLpro:L50,nsp9:L51F,RdRp:G839","T10204C,G12838T,G15957T",,,,,76.71,145.05,108.45,265.38
FD.4.1,Omicron,"nsp9:L51F,GFL:T102I,nsp16:I237F","G12838T,C13329T,A21367T",,,,,0.0,0.0,0.0,0.0
FD.5,Omicron,"RdRp:G839,nsp13:A296,ORF10:A8V","G15957T,T17124C,C29580T",,,,,32.09,61.96,0.0,0.0
FD.5.1,Omicron,"RdRp:G839,nsp13:V356,ORF10:A8V","G15957T,C17304T,C29580T",,,,,0.0,0.0,0.0,0.0
FE.1,XBB.X,"nsp3:S315G,ORF3a:F207C","A3662G,T26012G",,,,,33.91,65.89,15.55,32.69
FE.1.1,XBB.X,"nsp3:S315G,nsp3:L620,nsp3:D1761G,ORF3a:F207C,ORF8:S67F","A3662G,T4579A,A8001G,T26012G,C28093T",ORF8:S67F,,,,35.52,86.74,63.02,172.85
FE.1.1.1,XBB.X,"nsp3:T181I,nsp3:V286,nsp3:D1761G","C3261T,T3577G,A8001G",,,,,132.33,183.65,0.0,0.0
FE.1.1.2,XBB.X,"nsp3:Q173H,nsp3:D1761G","A3238C,A8001G",,,,,0.0,0.0,0.0,0.0
FE.1.1.4,XBB.X,"nsp3:S315G,nsp3:P539","A3662G,A4336G",,,,,0.0,0.0,0.0,0.0
FE.1.1.5,XBB.X,"nsp3:S315G,nsp3:L620,nsp3:D1761G,S:K557,ORF3a:F207C","A3662G,T4579A,A8001G,A23233G,T26012G",,,,,0.0,0.0,0.0,0.0
FE.1.2,XBB.X,"nsp3:S315G,nsp3:L923","A3662G,A5488G",,,,,54.04,96.67,34.47,67.74
FF.1,Omicron,"nsp2:I216V,S:V1164I","A1451G,G25052A",S:V1164I,,,,0.0,0.0,0.0,0.0
FG.1,Omicron,"RdRp:F442,ORF3a:A31V","T14766C,C25484T",ORF3a:A31V,,,,0.0,0.0,0.0,0.0
FG.2,Omicron,"nsp4:L471,RdRp:F442,S:D178N","C9967T,T14766C,G22094A",S:D178N,,,,0.0,0.0,0.0,0.0
FG.3,Omicron,"nsp4:F326,S:I934V","C9532T,A24362G",S:I934V,,,,0.0,0.0,194.38,964.79
FH.1,Omicron,"nsp3:G638,3CLpro:L50,S:T883I","C4633T,T10204C,C24210T",,,,,0.0,0.0,0.0,0.0
FJ.1,Omicron,"nsp3:Y18,ORF6:I26V","C2773T,A27277G",,,,,0.0,0.0,0.0,0.0
FK.1,Omicron,"nsp14:T206,S:V83,S:D215G","C18657T,C21811T,A22206G",S:D215G,,,,54.78,116.91,63.13,146.45
FK.1.1,Omicron,"nsp3:A242T,nsp16:L183I,S:T618","G3443A,C21205A,A23416T",,,,,51.39,105.55,0.0,0.0
FK.1.1.2,Omicron,"S:V83,S:V503,S:T618,ORF7b:L17","C21811T,T23071G,A23416T,C27804T",,,,,0.0,0.0,0.0,0.0
FK.1.2,Omicron,"nsp2:R370H,nsp14:T206,S:D215G","G1914A,C18657T,A22206G",S:D215G,,,,0.0,0.0,0.0,0.0
FK.1.2.1,Omicron,"nsp2:L204F,nsp2:R370H,nsp3:T73I","C1415T,G1914A,C2937T",,,,,0.0,0.0,402.01,477.01
FK.1.2.2,Omicron,"nsp2:L204F,ORF3a:T64N","C1415T,C25583A",,,,,0.0,0.0,0.0,0.0
FK.1.3.2,Omicron,"RdRp:N52,nsp14:M315I","T13596C,G18984A",,,,,0.0,0.0,0.0,0.0
FK.1.5,Omicron,"nsp2:G220,nsp3:E812","T1465C,G5155A",,,,,0.0,0.0,0.0,0.0
FL.1.1,Omicron,"nsp3:G175S,nsp16:Q238P","G3242A,A21371C",,,,,0.0,0.0,0.0,0.0
FL.1.3,Omicron,"nsp9:N95,RdRp:M615I,S:A701V","C12970T,G15285T,C23664T",S:A701V,,,,0.0,0.0,0.0,0.0
FL.1.4,Omicron,"nsp3:G175S,nsp9:N95,S:A701V,S:Q1208H,ORF10:P10S","G3242A,C12970T,C23664T,G25186T,C29585T","S:Q1208H,S:A701V",,,,0.0,0.0,0.0,0.0
FL.1.5,Omicron,"nsp2:Y441,nsp3:G175S,nsp3:G1001S,nsp7:D38,nsp9:N95,nsp16:K160R,S:F456L,S:A701V,N:N8","T2128C,G3242A,G5720A,C11956T,C12970T,A21137G,T22928C,C23664T,T28297C",S:A701V,S:F456L,,,20.62,44.38,13.09,27.44
FL.1.5.2,Omicron,"nsp2:Y124,nsp2:Y441,nsp9:N95,S:P561","T1177C,T2128C,C12970T,T23245C",,,,,0.0,0.0,0.0,0.0
FL.1.8,Omicron,"nsp9:N95,GFL:K95R,RdRp:Y479,S:A701V,M:I8V","C12970T,A13308G,C14877T,C23664T,A26544G","M:I8V,S:A701V",,,,0.0,0.0,0.0,0.0
FL.10.1,Omicron,"nsp2:C477Y,nsp3:D505,S:A930","G2235A,C4234T,T24352C",,,,,32.21,64.78,0.0,0.0
FL.10.2,Omicron,"nsp13:N459S,ORF3a:D27N","A17612G,G25471A","ORF3a:D27N,nsp13:N459S",,,,0.0,0.0,0.0,0.0
FL.10.3,Omicron,"nsp2:C477Y,S:G181R,S:C738","G2235A,G22103A,T23776C",S:G181R,,,,0.0,0.0,0.0,0.0
FL.11,Omicron,"nsp2:L169F,N:D63","G1312T,C28462T",,,,,0.0,0.0,0.0,0.0
FL.13,Omicron,"nsp3:E545,nsp3:G1001S","G4354A,G5720A",,,,,37.47,72.72,69.32,161.85
FL.13.1,Omicron,"nsp3:E545,S:A411S","G4354A,G22793T",S:A411S,,,,0.0,0.0,0.0,0.0
FL.13.2,Omicron,"nsp3:N1205,S:T114","T6334C,C21904T",,,,,0.0,0.0,0.0,0.0
FL.13.3,Omicron,"nsp3:E545,nsp7:D38,nsp14:S357","G4354A,C11956T,T19110C",,,,,0.0,0.0,177.62,434.69
FL.13.3.1,Omicron,"nsp14:S357,S:E154Q","T19110C,G22022C",S:E154Q,,,,0.0,0.0,0.0,0.0
FL.13.4.1,Omicron,"nsp3:V1770L,RdRp:T803S","G8027C,A15847T",nsp3:V1770L,,,,0.0,0.0,0.0,0.0
FL.14,Omicron,"S:I472,S:V1122M","C22978T,G24926A",S:V1122M,,,,0.0,0.0,0.0,0.0
FL.15,Omicron,"nsp2:E457K,nsp3:G1001S,nsp7:D38,S:F456L,N:R191","G2174A,G5720A,C11956T,T22928C,C28846T",,S:F456L,,,30.13,58.7,31.53,62.43
FL.15.1.1,Omicron,"nsp2:Q395H,nsp9:L69","G1990T,C12890T",,,,,40.15,114.11,40.81,111.82
FL.15.2,Omicron,"nsp2:G220V,nsp9:L69,S:Q14H,N:G321","G1464T,C12890T,G21604T,C29236T",S:Q14H,,,,0.0,0.0,0.0,0.0
FL.15.3,Omicron,"nsp2:E457K,nsp9:L69,S:G181V","G2174A,C12890T,G22104T",S:G181V,,,,0.0,0.0,0.0,0.0
FL.15.4,Omicron,"nsp3:S1367N,nsp9:L69,S:Q14H","G6819A,C12890T,G21604T",S:Q14H,,,,0.0,0.0,0.0,0.0
FL.16,Omicron,"nsp3:A264,S:D215V","C3511T,A22206T",S:D215V,,,,0.0,0.0,0.0,0.0
FL.17,Omicron,"nsp3:V393,N:P20","T3898C,C28333T",,,,,0.0,0.0,0.0,0.0
FL.17.2,Omicron,"nsp3:V393,ORF7a:V104L","T3898C,G27703C",,,,,0.0,0.0,0.0,0.0
FL.18.1,Omicron,"nsp9:R74,N:T166I","G12907A,C28770T",N:T166I,,,,0.0,0.0,0.0,0.0
FL.19,Omicron,"nsp2:N524,S:L981","T2377C,T24505G",,,,,0.0,0.0,0.0,0.0
FL.19.1,Omicron,"nsp2:N524,nsp9:Y89","T2377C,C12952T",,,,,0.0,0.0,0.0,0.0
FL.2,Omicron,"nsp3:L620,nsp3:G1001S,nsp7:D38","T4579A,G5720A,C11956T",,,,,39.07,83.49,68.03,125.7
FL.2.1,Omicron,"nsp3:L620,3CLpro:L58","T4579A,C10228T",,,,,0.0,0.0,12.46,25.25
FL.2.2.1,Omicron,"S:G142,S:T307I","T21988C,C22482T",S:T307I,,,,0.0,0.0,0.0,0.0
FL.2.3,Omicron,"nsp3:L620,nsp7:D38,nsp13:K460R","T4579A,C11956T,A17615G",,,,,51.73,108.58,138.3,280.4
FL.2.3.1,Omicron,"nsp3:L620,nsp6:L72,nsp13:K460R","T4579A,A11188G,A17615G",,,,,0.0,0.0,0.0,0.0
FL.2.4,Omicron,"nsp3:L620,nsp3:G1001S,nsp7:D38,ORF8:S67F","T4579A,G5720A,C11956T,C28093T",ORF8:S67F,,,,0.0,0.0,0.0,0.0
FL.2.5,Omicron,"nsp3:L620,S:Q314E","T4579A,C22502G",S:Q314E,,,,93.1,170.17,0.0,0.0
FL.2.6,Omicron,"S:N641K,ORF3a:F43","T23485A,C25521T",S:N641K,,,,0.0,0.0,0.0,0.0
FL.2.7,Omicron,"nsp3:L620,nsp3:A1800T","T4579A,G8117A",,,,,0.0,0.0,0.0,0.0
FL.2.7.1,Omicron,"nsp3:A1800T,nsp6:V149F","G8117A,G11417T",,,,,0.0,0.0,0.0,0.0
FL.20,Omicron,"RdRp:F192,S:Q52H","C14016T,G21718C",S:Q52H,,,,26.32,51.14,17.72,19.71
FL.20.1,Omicron,"S:L455W,ORF3a:L108F","T22926G,C25714T",,S:L455W,,,0.0,0.0,35.95,70.26
FL.20.2,Omicron,"nsp15:N45,ORF3a:L108F","T19755C,C25714T",,,,,25.68,54.82,0.0,0.0
FL.21,Omicron,"3CLpro:G170,nsp7:D38","A10564T,C11956T",,,,,0.0,0.0,0.0,0.0
FL.21.1,Omicron,"3CLpro:G170,S:D1084N","A10564T,G24812A",S:D1084N,,,,0.0,0.0,0.0,0.0
FL.21.2,Omicron,"nsp4:I110M,S:A475","A8884G,C22987A",nsp4:I110M,,,,0.0,0.0,0.0,0.0
FL.22,Omicron,"nsp13:I493V,S:T874","A17713G,T24184C",nsp13:I493V,,,,0.0,0.0,0.0,0.0
FL.23,Omicron,"nsp3:G1001S,nsp7:D38,nsp13:V209I","G5720A,C11956T,G16861A",nsp13:V209I,,,,0.0,0.0,0.0,0.0
FL.23.1,Omicron,"nsp3:N1864,nsp13:V209I","C8311T,G16861A",nsp13:V209I,,,,0.0,0.0,0.0,0.0
FL.24,Omicron,"S:Q613H,ORF3a:N82S","G23401T,A25637G",S:Q613H,,,,0.0,0.0,0.0,0.0
FL.24.1,Omicron,"nsp4:D195,S:N1119,ORF3a:N82S","T9139C,C24919T,A25637G",,,,,0.0,0.0,0.0,0.0
FL.26.1,Omicron,"S:T33,S:Q493L","A21661C,A23040T",,S:Q493L,,,0.0,0.0,0.0,0.0
FL.27,Omicron,"nsp3:G1001S,nsp6:V178I","G5720A,G11504A",,,,,0.0,0.0,0.0,0.0
FL.28,Omicron,"nsp3:S702F,nsp9:A28,RdRp:Y38","C4824T,G12769A,C13554T",,,,,0.0,0.0,0.0,0.0
FL.29,Omicron,"nsp7:D38,nsp15:I280V,S:F490L","C11956T,A20458G,T23030C",,S:F490L,,,0.0,0.0,0.0,0.0
FL.3,Omicron,"nsp2:Y316,nsp3:G1001S,N:N8","T1753C,G5720A,T28297C",,,,,119.01,260.51,78.93,186.73
FL.3.1,Omicron,"nsp2:Y316,nsp3:T1446I","T1753C,C7056T",,,,,0.0,0.0,112.05,263.56
FL.3.2,Omicron,"nsp2:Y316,nsp3:G1001S,nsp4:A92","T1753C,G5720A,T8830C",,,,,0.0,0.0,94.26,172.36
FL.3.3,Omicron,"nsp2:Y316,GFL:A32V","T1753C,C13119T",,,,,0.0,0.0,133.85,237.67
FL.3.4,Omicron,nsp2:Y316,"T1753C,T26232C",,,,,0.0,0.0,4309.57,1716.47
FL.30.1,Omicron,"nsp1:A79T,nsp3:I1528,S:A852S","G500A,C7303T,G24116T",S:A852S,,,,0.0,0.0,0.0,0.0
FL.31,Omicron,"nsp9:A28,RdRp:M666I","G12769T,G15438T",,,,,0.0,0.0,0.0,0.0
FL.31.1,Omicron,"nsp2:A26V,nsp13:D113,S:D80H,ORF3a:D27H","C882T,C16575T,G21800C,G25471C","S:D80H,ORF3a:D27H",,,,0.0,0.0,0.0,0.0
FL.32,Omicron,"nsp3:V1538I,S:E554Q,N:D128","G7331A,G23222C,C28657T",S:E554Q,,,,0.0,0.0,0.0,0.0
FL.32.1,Omicron,"nsp3:V1538I,S:E554Q,ORF3a:S60,N:D128","G7331A,G23222C,C25572T,C28657T",S:E554Q,,,,0.0,0.0,0.0,0.0
FL.33,Omicron,"nsp3:G1001S,nsp7:D38,nsp13:A454V","G5720A,C11956T,C17597T",,,,,0.0,0.0,0.0,0.0
FL.34,Omicron,"S:D1118Y,ORF3a:S74,ORF8:F120LF","G24914T,C25614T,T28250TCTG",S:D1118Y,,,,0.0,0.0,0.0,0.0
FL.35,Omicron,"nsp3:G1001S,nsp7:D38,ORF8:S103L","G5720A,C11956T,C28201T",,,,,0.0,0.0,0.0,0.0
FL.36,Omicron,"nsp7:V66I,S:A1070T","G12038A,G24770A",S:A1070T,,,,0.0,0.0,0.0,0.0
FL.37,Omicron,"nsp1:G94,nsp3:G1001S,ORF10:C19","C547T,G5720A,C29614T",,,,,0.0,0.0,0.0,0.0
FL.4,Omicron,"nsp7:D38,nsp13:V169F","C11956T,G16741T",,,,,21.73,47.39,10.46,21.13
FL.4.1,Omicron,"nsp13:V169F,S:N450I,N:G114","G16741T,A22911T,A28615G",,S:N450I,,,0.0,0.0,0.0,0.0
FL.4.11,Omicron,"nsp13:V169F,S:D1259Y,N:T334I","G16741T,G25337T,C29274T",S:D1259Y,,,,0.0,0.0,0.0,0.0
FL.4.2,Omicron,"nsp3:T133I,ORF10:S15","C3117T,T29602C",,,,,0.0,0.0,2233.08,651.31
FL.4.3,Omicron,"nsp3:P1558,N:G114","G7393T,A28615G",,,,,0.0,0.0,0.0,0.0
FL.4.5,Omicron,"nsp3:D410G,nsp13:V169F,S:S691,N:G114","A3948G,G16741T,C23635T,A28615G",,,,,0.0,0.0,0.0,0.0
FL.4.6,Omicron,"RdRp:Y175,S:S691","C13965T,C23635T",,,,,0.0,0.0,0.0,0.0
FL.5,Omicron,"nsp3:G1001S,nsp7:D38,nsp9:T35I,RdRp:D833,nsp13:S36P,ORF8:G8*,N:N8,N:T362I","G5720A,C11956T,C12789T,T15939C,T16342C,G27915T,T28297C,C29358T",N:T362I,,,,53.17,119.59,190.52,307.26
FL.5.1,Omicron,"nsp2:L635,ORF7b:L25I,N:T362I","C2710T,C27828A,C29358T",N:T362I,,,,0.0,0.0,0.0,0.0
FL.6,Omicron,"nsp3:I31V,nsp3:G1001S,nsp7:D38","A2810G,G5720A,C11956T",,,,,0.0,0.0,0.0,0.0
FL.7,Omicron,S:T51I,"C222T,C21714T",S:T51I,,,,0.0,0.0,0.0,0.0
FL.8,Omicron,"nsp3:G1001S,nsp7:D38,ORF3a:I62F","G5720A,C11956T,A25576T",,,,,0.0,0.0,192.01,310.75
FL.9,Omicron,S:P715,"C23707T,T29691C",,,,,0.0,0.0,108.28,254.2
FM.1,Omicron,"3CLpro:G174,S:Q613H","C10576T,G23401T",S:Q613H,,,,0.0,0.0,19.63,41.05
FN.1,Omicron,"RdRp:Y273H,nsp13:N177,nsp13:N268S,S:K182E,S:T478R","T14257C,C16767T,A17039G,A22106G,C22995G","nsp13:N268S,S:K182E",S:T478R,,,0.0,0.0,0.0,0.0
FP.2.1,XBB.X,"nsp3:T133A,RdRp:A176","A3116G,C13968A",,,,,0.0,0.0,0.0,0.0
FP.2.1.1,XBB.X,"nsp4:V315I,RdRp:A639","G9497A,T15357C",,,,,0.0,0.0,0.0,0.0
FP.4,XBB.X,"nsp2:V577,RdRp:A176,nsp13:P47","C2536T,C13968A,G16377A",,,,,0.0,0.0,0.0,0.0
FR.1,Omicron,"nsp2:C236,E:D72G","C1513T,A26459G",,,,,0.0,0.0,0.0,0.0
FR.1.1,Omicron,"nsp2:L523,S:P82H","T2372C,C21807A",S:P82H,,,,0.0,0.0,0.0,0.0
FR.1.3,Omicron,"S:K187E,ORF8:Y42","A22121G,T28019C",S:K187E,,,,0.0,0.0,0.0,0.0
FS.1,Omicron,"nsp2:A306V,nsp3:N1099","C1722T,C6016T",,,,,0.0,0.0,82.05,196.14
FT.1,Omicron,"nsp2:S358L,S:I197V","C1878T,A22151G",S:I197V,,,,0.0,0.0,0.0,0.0
FT.2,Omicron,"nsp16:L244,S:K1045N","A21390G,G24697T",S:K1045N,,,,0.0,0.0,0.0,0.0
FT.3,Omicron,"3CLpro:L50,nsp6:M115T,S:Q52H","T10204C,T11316C,G21718T",S:Q52H,,,,36.24,77.74,0.0,0.0
FT.3.1,Omicron,"nsp6:M115T,nsp14:L109","T11316C,A18366G",,,,,45.5,73.53,0.0,0.0
FT.3.1.1,Omicron,"S:A348S,S:D1168H","G22604T,G25064C",S:D1168H,S:A348S,,,46.6,76.27,0.0,0.0
FT.4,Omicron,"3CLpro:L50,S:E180Q","T10204C,G22100C",S:E180Q,,,,0.0,0.0,0.0,0.0
FU.1,Omicron,"nsp3:D361,nsp9:A15,nsp14:D222Y,S:T547I","T3802C,T12730A,G18703T,C23202T",S:T547I,,,,30.4,63.22,53.96,94.44
FU.1.1,Omicron,"S:T547I,S:K1266R,M:L62","C23202T,A25359G,A26708G","S:K1266R,S:T547I",,,,0.0,0.0,0.0,0.0
FU.1.1.1,Omicron,"nsp3:A861V,M:L62","C5301T,A26708G",,,,,0.0,0.0,0.0,0.0
FU.2,Omicron,"nsp4:Y46,S:T547I","C8692T,C23202T",S:T547I,,,,8.82,17.44,10.82,21.52
FU.2.1,Omicron,"S:T547I,S:E619Q","C23202T,G23417C","S:E619Q,S:T547I",,,,14.08,29.35,0.0,0.0
FU.3,Omicron,"nsp6:L231,S:T547I","C11665T,C23202T",S:T547I,,,,0.0,0.0,0.0,0.0
FU.5,Omicron,"nsp13:E353,nsp13:Y398","A17295G,C17430T",,,,,0.0,0.0,0.0,0.0
FV.1,Omicron,"nsp14:T103,S:E484G,N:R93","C18348A,A23013G,C28550A",,S:E484G,,,0.0,0.0,0.0,0.0
FW.1,XBB.X,"S:A701V,ORF6:F2","C23664T,TTT27205TT",S:A701V,,,,66.89,144.72,31.06,66.48
FW.1.1,XBB.X,"nsp2:D391,nsp13:I525L","T1978C,A17809C",nsp13:I525L,,,,0.0,0.0,11.32,23.05
FW.1.1.1,XBB.X,"nsp3:S1467F,nsp13:I525L","C7119T,A17809C",nsp13:I525L,,,,0.0,0.0,31.12,60.83
FY.1,XBB.X,"nsp1:K47R,nsp13:S36P,nsp14:D258N,nsp14:P429,S:V83A,S:H146Q,S:Y200C,S:V213E,S:G252V,ORF8:G8*,N:N8","A405G,T16342C,G18811A,A19326G,T21810C,C22000A,A22161G,T22200A,G22317T,G27915T,T28297C","S:H146Q,S:V213E,S:G252V,S:V83A,S:Y200C",,,,29.7,60.77,37.6,79.3
FY.1.1,XBB.X,"nsp14:D258N,S:V83F","G18811A,G21809T",S:V83F,,,,0.0,0.0,0.0,0.0
FY.1.2,XBB.X,"RdRp:P227L,nsp14:D258N","C14120T,G18811A",,,,,6.66,12.95,42.27,82.85
FY.1.2.1,XBB.X,"RdRp:A2,S:W64L","T13447A,G21753T",S:W64L,,,,0.0,0.0,0.0,0.0
FY.1.2.2,XBB.X,"S:V1129I,N:D144G","G24947A,A28704G",N:D144G,,,,0.0,0.0,0.0,0.0
FY.1.2.3,XBB.X,"nsp3:I385,RdRp:P227L,S:D215H","C3874T,C14120T,G22205C",S:D215H,,,,0.0,0.0,0.0,0.0
FY.1.4,XBB.X,"nsp14:D258N,nsp14:E365","G18811A,A19134G",,,,,0.0,0.0,0.0,0.0
FY.1.4.1,XBB.X,"nsp3:A146,nsp3:F709","C3157A,T4846C",,,,,0.0,0.0,0.0,0.0
FY.2,XBB.X,"nsp13:S74P,S:Y200C","T16456C,A22161G","nsp13:S74P,S:Y200C",,,,14.64,30.37,0.0,0.0
FY.2.1,XBB.X,"nsp3:T1056I,nsp13:S74P,S:I197T,N:P142","C5886T,T16456C,T22152C,A28699G","nsp13:S74P,S:I197T",,,,0.0,0.0,0.0,0.0
FY.3,XBB.X,"nsp2:E570K,S:F543","G2513A,C23191T",,,,,99.84,182.92,111.14,211.18
FY.3.1,XBB.X,"nsp2:E570K,nsp3:T942I,S:F543","G2513A,C5544T,C23191T",,,,,107.36,192.4,0.0,0.0
FY.3.2,XBB.X,"nsp2:E570K,nsp6:E195G,S:Y200C,S:F543","G2513A,A11556G,A22161G,C23191T",S:Y200C,,,,0.0,0.0,0.0,0.0
FY.3.3,XBB.X,"S:Y200C,S:F543,ORF3a:V48F","A22161G,C23191T,G25534T",S:Y200C,,,,0.0,0.0,0.0,0.0
FY.4,XBB.X,"nsp3:V1885,S:Y451H","A8374G,T22913C",S:Y451H,,,,38.1,86.17,50.25,91.06
FY.4.1.1,XBB.X,"nsp3:V1885,S:Y200C,S:Y451H,S:S494P,S:S704L,ORF3a:P42L","A8374G,A22161G,T22913C,T23042C,C23673T,C25517T","S:S704L,S:Y451H,S:Y200C",S:S494P,,,0.0,0.0,0.0,0.0
FY.4.1.2,XBB.X,"nsp3:V1885,nsp4:S163F,S:Y200C,S:Y451H","A8374G,C9042T,A22161G,T22913C","S:Y451H,S:Y200C",,,,0.0,0.0,0.0,0.0
FY.4.2,XBB.X,"nsp15:V236I,S:Y451H","G20326A,T22913C",S:Y451H,,,,0.0,0.0,0.0,0.0
FY.5,XBB.X,"nsp3:Q1100,S:Y200C","A6019G,A22161G",S:Y200C,,,,30.71,59.72,0.0,0.0
FY.5.1,XBB.X,"S:Y200C,S:T572I,M:L133","A22161G,C23277T,T26921C","S:T572I,S:Y200C",,,,0.0,0.0,59.51,203.29
FY.5.1.1,XBB.X,"S:F186S,M:L133","T22119C,T26921C",S:F186S,,,,0.0,0.0,0.0,0.0
FY.5.2,XBB.X,"nsp3:Q1100,S:Y200C,N:Q9","A6019G,A22161G,G28300A",S:Y200C,,,,0.0,0.0,0.0,0.0
FY.5.4,XBB.X,"nsp4:D246N,RdRp:F192","G9290A,C14016T",,,,,0.0,0.0,0.0,0.0
FY.5.5,XBB.X,"nsp4:T354,nsp14:G123","T9616C,T18408C",,,,,26.58,58.49,0.0,0.0
FY.5.5.1,XBB.X,"nsp4:M33I,nsp4:T354,nsp14:G123","G8653C,T9616C,T18408C",,,,,26.51,58.39,0.0,0.0
FY.6,XBB.X,"nsp2:A411V,S:Y200C","C2037T,A22161G",S:Y200C,,,,0.0,0.0,0.0,0.0
FY.6.1,XBB.X,"nsp2:A411V,nsp3:T261S","C2037T,A3500T",,,,,0.0,0.0,0.0,0.0
FY.8.1,XBB.X,"nsp14:P158S,S:Y200C","C18511T,A22161G",S:Y200C,,,,0.0,0.0,0.0,0.0
FY.8.1.1,XBB.X,"nsp13:V226L,nsp14:P158S","G16912T,C18511T",,,,,0.0,0.0,0.0,0.0
FY.9,XBB.X,"nsp2:D40E,S:Y200C","C925A,A22161G",S:Y200C,,,,0.0,0.0,0.0,0.0
FZ.1,Omicron,"nsp2:S369,nsp13:A296,S:E583D","C1912T,T17124C,G23311T",S:E583D,,,,0.0,0.0,96.41,219.86
FZ.1.1,Omicron,"S:E583D,S:L858I","G23311T,C24134A","S:L858I,S:E583D",,,,0.0,0.0,147.74,561.33
FZ.2,Omicron,"nsp6:G135,S:Q836R","T11377A,A24069G",S:Q836R,,,,0.0,0.0,0.0,0.0
G.1,,"nsp2:G220D,nsp2:G423S,nsp3:M951I,nsp3:A1179V,nsp6:A2,nsp16:Y47,N:G34","G1464A,G2072A,G5572T,C6255T,A10978T,T20799C,G28375T",,,,,,,,
GA.1,XBB.X,"nsp2:L289F,nsp2:G548C,nsp13:S36P,S:D215H,ORF8:G8*,ORF8:D34","C1670T,G2447T,T16342C,G22205C,G27915T,T27995C",S:D215H,,,,0.0,0.0,0.0,0.0
GA.3,XBB.X,"RdRp:A195V,nsp15:V185I","C14024T,G20173A",,,,,0.0,0.0,0.0,0.0
GA.4.1,XBB.X,"S:D215H,ORF8:K94E,N:S202C,N:S202T,N:A208V","G22205C,A28173G,A28877T,G28878C,C28896T","N:A208V,S:D215H",,,,0.0,0.0,0.0,0.0
GA.4.1.2,XBB.X,"nsp2:L289F,nsp3:Y857,nsp3:S1735F,S:D215H,S:H245Y,S:T572I,ORF8:D34,N:A208V","C1670T,T5290C,C7923T,G22205C,C22295T,C23277T,T27995C,C28896T","S:T572I,S:H245Y,N:A208V,S:D215H",,,,0.0,0.0,0.0,0.0
GA.4.1.3,XBB.X,"ORF8:K94E,N:K370N","A28173G,G29383T",N:K370N,,,,0.0,0.0,0.0,0.0
GA.5,XBB.X,"nsp2:L289F,S:D745","C1670T,T23797C",,,,,0.0,0.0,0.0,0.0
GA.6,XBB.X,"nsp2:L289F,nsp4:Q77,nsp15:V185I,ORF8:D34","C1670T,G8785A,G20173A,T27995C",,,,,0.0,0.0,0.0,0.0
GA.6.1,XBB.X,"nsp4:Q77,nsp15:L49","G8785A,A19767G",,,,,0.0,0.0,0.0,0.0
GB.1,Omicron,"nsp3:H1017,RdRp:H613,S:L518V","C5770T,C15279T,C23114G",S:L518V,,,,0.0,0.0,0.0,0.0
GB.2,Omicron,"nsp3:R646Q,nsp3:H1017","G4656A,C5770T",,,,,0.0,0.0,163.39,670.23
GC.1,Omicron,"nsp2:K142R,GFL:F89L","A1230G,T13291G",,,,,0.0,0.0,0.0,0.0
GC.2,Omicron,"nsp2:K142R,S:A352S","A1230G,G22616T",,S:A352S,,,0.0,0.0,0.0,0.0
GD.1,XBB.X,"nsp14:G481S,S:Y453F","G19480A,A22920T",,S:Y453F,,,0.0,0.0,0.0,0.0
GD.2,XBB.X,"nsp14:G481S,S:L212S","G19480A,T22197C",S:L212S,,,,0.0,0.0,0.0,0.0
GE.1,XBB.2.3.X,nsp3:P1076,T5947C,,,,,6.58,12.9,6.88,13.58
GE.1.2,XBB.2.3.X,"nsp2:G481S,nsp3:P1103S","G2246A,C6026T",nsp3:P1103S,,,,11.44,24.7,5.74,10.93
GE.1.3,XBB.2.3.X,"nsp13:I480V,S:T732I,S:F855","A17674G,C23757T,T24127C","nsp13:I480V,S:T732I",,,,0.0,0.0,29.14,65.19
GE.1.4,XBB.2.3.X,"3CLpro:P96S,nsp13:I480V","C10340T,A17674G","3CLpro:P96S,nsp13:I480V",,,,32.97,64.35,8.16,16.29
GE.1.5,XBB.2.3.X,"nsp13:V2,nsp13:I480V","T16242A,A17674G",nsp13:I480V,,,,0.0,0.0,34.99,67.75
GE.1.6,XBB.2.3.X,"nsp3:D1214,nsp9:A8T","C6361T,G12707A",,,,,0.0,0.0,0.0,0.0
GF.1,Omicron,"nsp2:L635,nsp14:L495,S:E748V","C2710T,C19524T,A23805T",S:E748V,,,,0.0,0.0,0.0,0.0
GG.1,Omicron,"nsp2:T223I,S:T478R,S:I666V","C1473T,C22995G,A23558G",S:I666V,S:T478R,,,0.0,0.0,0.0,0.0
GH.1,XBB.X,"nsp4:I198,RdRp:G584,N:T54","T9148C,A15192C,C28435A",,,,,0.0,0.0,0.0,0.0
GJ.1,XBB.2.3.X,"nsp1:K47R,RdRp:D833,nsp13:Y541,nsp14:P429,S:V83A,S:H146Q,S:K182N,S:Q183E,S:V213E,S:P521S,ORF7a:A13V,ORF8:E106Q","A405G,T15939C,T17859C,A19326G,T21810C,C22000A,A22108T,C22109G,T22200A,C23123T,C27431T,G28209C","S:H146Q,S:Q183E,S:P521S,S:V213E,S:V83A,S:K182N",,,,28.25,63.28,32.65,65.77
GJ.1.1,XBB.2.3.X,"ORF8:E106Q,N:R319H","G28209C,G29229A",,,,,0.0,0.0,0.0,0.0
GJ.1.2,XBB.2.3.X,"nsp9:I65V,nsp13:V187I","A12878G,G16795A",,,,,28.33,63.41,31.75,63.76
GJ.1.2.2,XBB.2.3.X,"nsp3:G334C,N:T265","G3719T,T29068C",,,,,92.24,127.28,0.0,0.0
GJ.1.2.4,XBB.2.3.X,"nsp3:H101Y,nsp9:I65V,nsp13:V187I,ORF8:G8V,ORF8:E106Q","C3020T,A12878G,G16795A,G27916T,G28209C",,,,,0.0,0.0,0.0,0.0
GJ.1.2.5,XBB.2.3.X,"nsp3:L1700,M:T175,ORF8:E106Q","C7819G,G27047A,G28209C",,,,,0.0,0.0,0.0,0.0
GJ.1.2.7,XBB.2.3.X,"nsp2:S248,nsp3:H101Y,nsp3:D505,nsp3:N1264,nsp3:G1273S,nsp3:L1700,nsp9:I65V,nsp13:V187I,nsp15:Y88","C1549T,C3020T,C4234T,T6511C,G6536A,C7819G,A12878G,G16795A,C19884T",,,,,0.0,0.0,0.0,0.0
GJ.1.2.8,XBB.2.3.X,"nsp13:V187I,ORF3a:G100C","G16795A,G25690T",,,,,0.0,0.0,0.0,0.0
GJ.2,XBB.2.3.X,"RdRp:R285,S:I1114S","T14295C,T24903G",S:I1114S,,,,0.0,0.0,0.0,0.0
GJ.3,XBB.2.3.X,"nsp3:P153S,nsp3:D505,nsp15:V320L","C3176T,C4234T,G20578T",,,,,0.0,0.0,0.0,0.0
GJ.4,XBB.2.3.X,"S:M153I,S:Y1110","G22021A,T24892C",S:M153I,,,,0.0,0.0,0.0,0.0
GJ.5,XBB.2.3.X,"GFL:I38,S:K182N","C13138T,A22108T",S:K182N,,,,0.0,0.0,17.77,18.91
GJ.5.1,XBB.2.3.X,"nsp2:A360V,nsp8:A21V","C1884T,C12153T",,,,,0.0,0.0,8.28,16.32
GJ.6,XBB.2.3.X,"nsp3:T73I,nsp3:Y996C","C2937T,A5706G",,,,,0.0,0.0,0.0,0.0
GK.1,Omicron,"nsp8:A126S,S:S1161,ORF3a:T89I","G12467T,A25045G,C25658T",,,,,11.89,24.34,24.93,49.06
GK.1.1,Omicron,"nsp8:A126S,S:T573I,S:S1161","G12467T,C23280T,A25045G",S:T573I,,,,21.17,41.05,28.81,63.47
GK.1.1.1,Omicron,"nsp8:A126S,S:T573I,N:F53","G12467T,C23280T,C28432T",S:T573I,,,,32.55,69.44,0.0,0.0
GK.1.10,Omicron,"nsp3:I1816,N:D98","T8167C,C28567T",,,,,0.0,0.0,0.0,0.0
GK.1.11,Omicron,"S:S1161,ORF3a:L111","A25045G,A25725G",,,,,0.0,0.0,0.0,0.0
GK.1.2,Omicron,"nsp13:Y246,ORF3a:T89I","T16974C,C25658T",,,,,0.0,0.0,0.0,0.0
GK.1.2.1,Omicron,"nsp3:S697,nsp14:S218","C4810G,C18693A",,,,,0.0,0.0,0.0,0.0
GK.1.3,Omicron,"nsp3:S1615,nsp4:D61,nsp8:A126S,nsp13:D207G,S:S704L,M:Y179,N:D128","C7564T,T8737C,G12467T,A16856G,C23673T,C27059T,C28657T","S:S704L,nsp13:D207G",,,,0.0,0.0,0.0,0.0
GK.1.4,Omicron,"nsp2:L390,nsp3:L1417,nsp4:D61,nsp8:A126S,S:S98F,S:S1161,ORF3a:T89I,M:Y179","C1973T,A6970G,T8737C,G12467T,C21855T,A25045G,C25658T,C27059T",S:S98F,,,,0.0,0.0,0.0,0.0
GK.1.5,Omicron,"nsp3:T779I,S:F186L","C5055T,C22120A",S:F186L,,,,0.0,0.0,0.0,0.0
GK.1.6.1,Omicron,"nsp2:Y16,ORF3a:V50I","C853T,G25540A",,,,,43.53,76.42,0.0,0.0
GK.1.7,Omicron,"nsp6:V241,S:F186L","T11695C,C22120A",S:F186L,,,,0.0,0.0,0.0,0.0
GK.1.8,Omicron,"nsp14:L27,S:S1161","C18120T,A25045G",,,,,40.01,77.1,0.0,0.0
GK.1.8.1,Omicron,"nsp16:C25,S:K187I","T20733C,A22122T",S:K187I,,,,0.0,0.0,0.0,0.0
GK.1.9,Omicron,"nsp13:I258,S:S1161,ORF3a:T89I","C17010T,A25045G,C25658T",,,,,0.0,0.0,0.0,0.0
GK.2,Omicron,"nsp8:A126S,S:V511I,S:L727","G12467T,G23093A,C23741T",S:V511I,,,,40.31,74.1,39.83,93.32
GK.2.1,Omicron,"nsp2:L444I,nsp6:L72S","C2135A,T11187C",,,,,63.85,137.45,42.88,100.59
GK.2.1.1,Omicron,"nsp2:L444I,RdRp:S772C","C2135A,C15755G",,,,,63.51,137.94,43.24,101.27
GK.2.2,Omicron,"nsp3:L35,S:E554D","T2824C,G23224T",S:E554D,,,,0.0,0.0,0.0,0.0
GK.2.3,Omicron,"RdRp:Q932,S:L727","G16236A,C23741T",,,,,83.93,128.16,0.0,0.0
GK.2.4,Omicron,"nsp4:D61,S:T73,S:N354,S:L727,S:S1161","T8737C,C21781T,C22624T,C23741T,A25045G",,,,,0.0,0.0,0.0,0.0
GK.3,Omicron,"nsp3:A58S,nsp8:A126","G2891T,C12469T",,,,,32.29,62.43,0.0,0.0
GK.3.1,Omicron,"nsp2:L390,nsp3:A58S,nsp4:D61,nsp8:A126S,nsp8:A126,S:A475V","C1973T,G2891T,T8737C,G12467T,C12469T,C22986T",,S:A475V,,,68.31,158.82,0.0,0.0
GK.3.2,Omicron,"nsp3:A58S,nsp3:G490","G2891T,C4189T",,,,,0.0,0.0,0.0,0.0
GK.4,Omicron,"nsp2:L390,nsp4:D61,nsp4:T96I,nsp8:A126S,nsp8:A126,RdRp:T319I,nsp14:N256,S:A475V","C1973T,T8737C,C8841T,G12467T,C12469T,C14396T,C18807T,C22986T",,S:A475V,,,0.0,0.0,0.0,0.0
GK.6,Omicron,"nsp15:E228,S:E583A","A20304G,A23310C",S:E583A,,,,0.0,0.0,0.0,0.0
GK.7,Omicron,"S:N354,S:S1161,N:D3G","C22624T,A25045G,A28281G",N:D3G,,,,0.0,0.0,0.0,0.0
GK.8.1,Omicron,"nsp3:N737S,ORF6:E55Q","A4929G,G27364C",nsp3:N737S,,,,0.0,0.0,0.0,0.0
GL.1,,"nsp4:I289V,ORF3a:L65F","A9419G,C25585T",,,,,,,,
GL.3,,"nsp3:Y1050,nsp3:S1807,nsp8:Q24,nsp16:P7,S:F186L,S:G446D,S:A706V,S:T1117I,S:D1153Y,N:R149","C5869T,C8140T,G12163A,G20679T,T22118C,G22899A,C23679T,C24912T,G25019T,C28720T","S:T1117I,S:A706V,S:D1153Y,S:F186L",S:G446D,,,,,,
GM.3,XBB.2.3.X,"nsp2:F86,nsp8:R75K","C1063T,G12315A",,,,,0.0,0.0,0.0,0.0
GN.1,Omicron,"nsp3:N1705,3CLpro:T93I,nsp13:A296,S:F456L,ORF3a:G18V","C7834T,C10332T,T17124C,T22928C,G25445T,A28271C","3CLpro:T93I,ORF3a:G18V",S:F456L,,,33.87,64.62,0.0,0.0
GN.1.1,Omicron,"nsp3:N1705,nsp14:A119V,ORF3a:G18V","C7834T,C18395T,G25445T",ORF3a:G18V,,,,34.22,64.55,0.0,0.0
GN.1.2,Omicron,S:Q321L,"A22524T,A28271C",S:Q321L,,,,0.0,0.0,0.0,0.0
GN.1.4,Omicron,"nsp2:G581,nsp13:V210","T2548C,T16866C",,,,,0.0,0.0,0.0,0.0
GN.4,Omicron,nsp8:Q24L,"A12162T,A28271C",,,,,0.0,0.0,0.0,0.0
GP.1,Omicron,"nsp3:A358T,nsp14:V182I,nsp16:Q28R,ORF7a:T28I","G3791A,G18583A,A20741G,C27476T",,,,,0.0,0.0,0.0,0.0
GP.2,Omicron,"RdRp:D3,ORF6:S41F","T13450C,C27323T",,,,,0.0,0.0,85.97,214.17
GP.3,Omicron,"nsp13:T214,N:G321","A16878G,A26519G,C29236T",,,,,0.0,0.0,237.89,705.34
GR.1,Omicron,"3CLpro:L50,S:V445F,N:F274","T10204C,G22895T,C29095T",,S:V445F,,,0.0,0.0,0.0,0.0
GS.1,XBB.2.3.X,"nsp3:D505,nsp3:N621,S:V213","C4234T,C4582T,G22201T",,,,,0.0,0.0,0.0,0.0
GS.3,XBB.2.3.X,"RdRp:F56,nsp15:F279L","C13608T,T20455C",,,,,0.0,0.0,57.03,137.92
GS.4,XBB.2.3.X,"RdRp:T276,ORF3a:A103","G14268A,C25701T",,,,,19.3,40.47,35.62,64.13
GS.4.1,XBB.2.3.X,"nsp2:A1T,ORF3a:A103","G806A,C25701T",,,,,19.22,40.3,17.39,32.19
GS.4.1.1,XBB.2.3.X,"nsp3:G1273S,S:P561S,ORF3a:A103,ORF3a:G172C","G6536A,C23243T,C25701T,G25906T","S:P561S,ORF3a:G172C",,,,0.0,0.0,0.0,0.0
GS.5,XBB.2.3.X,"S:Q218H,ORF7a:A13V","G22216T,C27431T",S:Q218H,,,,0.0,0.0,0.0,0.0
GS.6,XBB.2.3.X,"nsp3:D505,nsp3:N621,nsp4:V403I,RdRp:V320,RdRp:A581V,nsp13:H164Y,nsp13:F346,S:L84,S:D253G,S:D571,ORF7a:A13V","C4234T,C4582T,G9761A,G14400A,C15182T,C16726T,C17274T,C21812T,A22320G,C23275T,C27431T","nsp13:H164Y,S:D253G",,,,0.0,0.0,0.0,0.0
GS.7,XBB.2.3.X,"nsp2:L24I,RdRp:F56","C875A,C13608T",,,,,0.0,0.0,0.0,0.0
GS.8,XBB.2.3.X,"3CLpro:D34,nsp8:L169F,RdRp:N743,ORF3a:I179V","C10156T,C12596T,T15669C,A25927G,G29543C",ORF3a:I179V,,,,0.0,0.0,0.0,0.0
GU.1,Omicron,"S:N481S,S:V772I","A23004G,G23876A",S:V772I,S:N481S,,,0.0,0.0,0.0,0.0
GV.1,Omicron,S:A1056,A24730T,,,,,10.56,21.29,11.94,24.05
GW.1,XBB.X,"nsp2:D84N,N:M322V","G1055A,A29237G",,,,,0.0,0.0,0.0,0.0
GW.2,XBB.X,"RdRp:P620,ORF3a:L83","T15300C,G25641A",,,,,0.0,0.0,0.0,0.0
GW.3,XBB.X,"nsp1:L92,nsp1:S100N,nsp4:S496","C541T,G564A,A10042G,G29810T",,,,,0.0,0.0,0.0,0.0
GW.4,XBB.X,"3CLpro:M17I,nsp16:N235","G10105T,T21363C",3CLpro:M17I,,,,0.0,0.0,0.0,0.0
GW.5,XBB.X,"nsp2:S122F,nsp9:P80L,S:T478I,N:P80S,N:N150","C1170T,C12924T,C22995T,C28511T,T28723C",N:P80S,S:T478I,,,0.0,0.0,15.48,30.45
GW.5.1,XBB.X,"nsp2:S122F,nsp8:L128,nsp9:P80L,nsp16:N235,S:T478I,ORF3a:W149C,N:N150","C1170T,C12473T,C12924T,T21363C,C22995T,G25839T,T28723C",,S:T478I,,,0.0,0.0,16.97,32.82
GW.5.1.1,XBB.X,"nsp9:P80L,nsp16:N235,S:F79S,N:N150","C12924T,T21363C,T21798C,T28723C",S:F79S,,,,0.0,0.0,24.23,59.29
GW.5.2,XBB.X,"nsp4:V212,N:P80S","G9190A,C28511T",N:P80S,,,,0.0,0.0,0.0,0.0
GW.5.3,XBB.X,"nsp8:L128,N:P80S,N:D82","C12473T,C28511T,C28519T",N:P80S,,,,0.0,0.0,0.0,0.0
GW.5.3.1,XBB.X,"nsp9:P80L,nsp16:N235,S:G184A,S:A475V,S:T478I,N:P80S,N:N150","C12924T,T21363C,G22113C,C22986T,C22995T,C28511T,T28723C","N:P80S,S:G184A","S:T478I,S:A475V",,,0.0,0.0,0.0,0.0
GY.1,Omicron,"nsp8:A126S,RdRp:V472,S:L84I","G12467T,A14856G,C21812A",S:L84I,,,,0.0,0.0,0.0,0.0
GY.1.1,Omicron,"nsp14:Y447,S:L84I","C19380T,C21812A",S:L84I,,,,0.0,0.0,0.0,0.0
GY.2.1,Omicron,"nsp3:P108H,S:T883I,ORF3a:V13L","C3042A,C24210T,G25429C",,,,,0.0,0.0,0.0,0.0
GY.5,Omicron,"nsp3:P108H,nsp4:V212,ORF3a:V13L","C3042A,G9190C,G25429C",,,,,29.38,68.52,66.43,172.84
GY.6,Omicron,"nsp3:P108H,nsp3:V947I,ORF3a:V13L","C3042A,G5558A,G25429C",,,,,0.0,0.0,0.0,0.0
GY.7,Omicron,"nsp6:G48C,ORF3a:V13L","G11114T,G25429C",,,,,0.0,0.0,0.0,0.0
GY.8,Omicron,"nsp3:P108H,ORF3a:V13L,ORF3a:I20","C3042A,G25429C,C25452T",,,,,0.0,0.0,0.0,0.0
GY.9,Omicron,"nsp3:T127A,S:F186S,ORF3a:V13L","A3098G,T22119C,G25429C",S:F186S,,,,0.0,0.0,0.0,0.0
GZ.1,XBB.2.3.X,"S:F186L,S:T478P","C22120A,A22994C",S:F186L,S:T478P,,,0.0,0.0,0.0,0.0
HA.1,Omicron,"nsp4:G105S,nsp6:M143V,S:F456L","G8867A,A11399G,T22930A",nsp4:G105S,S:F456L,,,0.0,0.0,0.0,0.0
HA.2,Omicron,"nsp4:K35,nsp4:G105S,nsp6:M143V","A8659G,G8867A,A11399G",nsp4:G105S,,,,0.0,0.0,0.0,0.0
HB.1,XBB.X,"nsp3:G171C,nsp3:L1137","G3230T,T6130C",,,,,0.0,0.0,0.0,0.0
HC.1,Omicron,"nsp13:G251,S:P631S","C16989T,C23453T",S:P631S,,,,0.0,0.0,0.0,0.0
HC.2,Omicron,"nsp3:G255V,nsp13:D32,nsp13:G251,N:P142","G3483T,C16332T,C16989T,A28699T",,,,,0.0,0.0,0.0,0.0
HC.3,Omicron,"nsp13:G251,S:P793S","C16989T,C23939T",S:P793S,,,,0.0,0.0,0.0,0.0
HE.1,XBB.X,"nsp3:V286,S:V622I","T3577G,G23426A",S:V622I,,,,142.28,481.71,0.0,0.0
HE.2,XBB.X,"nsp4:L297,S:H1058Y","T9445C,C24734T",S:H1058Y,,,,0.0,0.0,0.0,0.0
HF.1,Omicron,"nsp3:G283D,nsp13:G571,S:F1148","G3567A,C17949T,C25006T",,,,,21.02,41.35,21.71,39.31
HF.1.1,Omicron,"RdRp:A185V,nsp13:V305L","C13994T,G17149T",nsp13:V305L,,,,30.15,64.33,0.0,0.0
HF.1.2,Omicron,"nsp3:P340S,nsp13:G571","C3737T,C17949T",,,,,26.56,57.62,20.72,37.56
HG.1,XBB.2.3.X,"nsp2:A403V,nsp4:I23V,S:S98F","C2013T,A8621G,C21855T",S:S98F,,,,0.0,0.0,0.0,0.0
HG.2,XBB.2.3.X,"nsp2:A403V,nsp4:I23V,nsp4:I132","C2013T,A8621G,C8950T",,,,,0.0,0.0,0.0,0.0
HH.1,XBB.2.3.X,"nsp4:T214I,nsp16:N13","C9195T,T20697C",,,,,43.87,91.09,0.0,0.0
HH.1.1,XBB.2.3.X,"nsp16:N13,S:L877","T20697C,G24193A",,,,,43.25,89.26,0.0,0.0
HH.2,XBB.2.3.X,"nsp1:D48Y,S:L877","G407T,G24193A,C26228A",,,,,0.0,0.0,0.0,0.0
HH.2.1,XBB.2.3.X,"nsp4:K473,3CLpro:S81F","G9973A,C10296T",3CLpro:S81F,,,,0.0,0.0,0.0,0.0
HH.4,XBB.2.3.X,"S:G184V,S:A845S,S:L877,ORF3a:R134H","G22113T,G24095T,G24193A,G25793A","S:A845S,S:G184V",,,,0.0,0.0,0.0,0.0
HH.5,XBB.2.3.X,"nsp3:R1341W,nsp9:P57S","C6740T,C12854T",,,,,0.0,0.0,0.0,0.0
HH.7,XBB.2.3.X,"nsp3:D505,nsp3:T970M,S:G184V","C4234T,C5628T,G22113T",S:G184V,,,,0.0,0.0,0.0,0.0
HH.8.1,XBB.2.3.X,"S:G184V,S:Q607R","G22113T,A23382G","S:Q607R,S:G184V",,,,0.0,0.0,0.0,0.0
HJ.1,Omicron,"nsp3:T608,S:E324K,S:T573I","C4543T,G22532A,C23280T","S:T573I,S:E324K",,,,0.0,0.0,0.0,0.0
HK.1.2,Omicron,"nsp3:V1201I,S:L455F","G6320A,G22927C",,S:L455F,,,0.0,0.0,0.0,0.0
HK.11,Omicron,"S:G184S,ORF3a:S60","G22112A,C25572T",S:G184S,,,,30.11,81.77,13.15,27.54
HK.11.1,Omicron,"nsp3:H1274,GFL:F68,RdRp:D63N,S:G184S,ORF3a:S60","C6541T,T13228C,G13627A,G22112A,C25572T","RdRp:D63N,S:G184S",,,,0.0,0.0,0.0,0.0
HK.13.1,Omicron,"GFL:T118,S:R1014","C13378T,A24604G",,,,,0.0,0.0,0.0,0.0
HK.13.2,Omicron,"nsp3:N1099,S:D1153H","C6016T,G25019C",S:D1153H,,,,0.0,0.0,0.0,0.0
HK.13.2.1,Omicron,"nsp13:T255A,S:D1153H","A16999G,G25019C",S:D1153H,,,,0.0,0.0,0.0,0.0
HK.16,Omicron,"S:A684V,S:V1264L,ORF3a:S60,N:P67S","C23613T,G25352T,C25572T,C28472T","N:P67S,S:V1264L,S:A684V",,,,0.0,0.0,0.0,0.0
HK.20.1,Omicron,"nsp4:A298,S:G482R","C9448A,G23006C",,S:G482R,,,34.53,92.27,0.0,0.0
HK.21,Omicron,"nsp3:A496,S:T470N,S:D796H","G4207T,C22971A,G23948C",S:D796H,S:T470N,,,0.0,0.0,0.0,0.0
HK.22,Omicron,"RdRp:A656,nsp14:R98K","T15408C,G18332A",,,,,0.0,0.0,0.0,0.0
HK.23,Omicron,"nsp3:H1274,nsp4:A380V,RdRp:D63N,S:Q52H,ORF8:A65V","C6541T,C9693T,G13627A,G21718T,C28087T","RdRp:D63N,S:Q52H,ORF8:A65V",,,,0.0,0.0,0.0,0.0
HK.23.1,Omicron,"nsp4:T143N,nsp15:T30","C8982A,T19710C",,,,,0.0,0.0,0.0,0.0
HK.24.1,Omicron,"RdRp:D63N,S:Q52H,S:L455F,S:E654K,ORF3a:S60,ORF10:S23F","G13627A,G21718T,G22927T,G23522A,C25572T,C29625T","RdRp:D63N,S:Q52H,S:E654K",S:L455F,,,0.0,0.0,0.0,0.0
HK.25,Omicron,"nsp3:I458,M:A195","C4093A,A27107C",,,,,0.0,0.0,0.0,0.0
HK.26,Omicron,"RdRp:D63N,RdRp:Y516,ORF3a:L52I","G13627A,T14988C,C25546A",RdRp:D63N,,,,32.18,66.64,34.22,56.79
HK.26.1,Omicron,"RdRp:Y516,S:A475V,ORF3a:L52I","T14988C,C22986T,C25546A",,S:A475V,,,0.0,0.0,0.0,0.0
HK.27,Omicron,"nsp3:T771I,RdRp:D63N","C5031T,G13627A",RdRp:D63N,,,,60.8,93.69,0.0,0.0
HK.27.1,Omicron,"nsp3:T771I,nsp3:H1274,RdRp:D63N,S:Q52H,ORF3a:S60","C5031T,C6541T,G13627A,G21718T,C25572T","RdRp:D63N,S:Q52H",,,,61.1,94.03,0.0,0.0
HK.27.1.1,Omicron,"nsp3:T771I,S:Q14H","C5031T,G21604T",S:Q14H,,,,0.0,0.0,0.0,0.0
HK.28,Omicron,"nsp14:F377,ORF3a:S60","C19170T,C25572T",,,,,7.77,15.32,0.0,0.0
HK.29,Omicron,"nsp3:G1691D,RdRp:D63N,ORF3a:S60","G7791A,G13627A,C25572T",RdRp:D63N,,,,57.04,130.95,0.0,0.0
HK.3.10,Omicron,"RdRp:D63N,nsp14:N104,S:A1078S","G13627A,T18351C,G24794T","RdRp:D63N,S:A1078S",,,,0.0,0.0,0.0,0.0
HK.3.11,Omicron,"nsp8:N108,nsp13:V387","C12415T,C17397A",,,,,0.0,0.0,0.0,0.0
HK.3.12,Omicron,"3CLpro:A260,S:A688T","C10834T,G23624A",S:A688T,,,,0.0,0.0,0.0,0.0
HK.3.13,Omicron,"RdRp:Y483,S:Q14R","C14889T,A21603G",S:Q14R,,,,0.0,0.0,0.0,0.0
HK.3.2,Omicron,"S:Q14K,ORF3a:S60","C21602A,C25572T",S:Q14K,,,,34.71,69.03,16.48,31.77
HK.3.2.1,Omicron,"3CLpro:F305,S:Q14K","C10969T,C21602A",S:Q14K,,,,0.0,0.0,0.0,0.0
HK.3.2.2,Omicron,"nsp2:Y16,nsp3:G1524E,ORF3a:I35T","C853T,G7290A,T25496C",ORF3a:I35T,,,,0.0,0.0,0.0,0.0
HK.3.3,Omicron,"nsp2:A510V,nsp3:H1274,RdRp:D63N,S:Q52H,S:S256L,S:L455F,ORF3a:S60,N:P364L","C2334T,C6541T,G13627A,G21718T,C22329T,G22927T,C25572T,C29364T","RdRp:D63N,S:Q52H,N:P364L,S:S256L",S:L455F,,,0.0,0.0,0.0,0.0
HK.3.4,Omicron,"nsp2:T160I,GFL:P100,ORF7a:A79","C1284T,T13324C,C27630T",,,,,0.0,0.0,46.51,149.28
HK.3.5,Omicron,"RdRp:D63N,nsp14:H95,S:P174S,ORF3a:S60","G13627A,T18324C,C22082T,C25572T","RdRp:D63N,S:P174S",,,,0.0,0.0,0.0,0.0
HK.3.6,Omicron,"nsp4:L106,S:G181R","T8870C,G22103A",S:G181R,,,,0.0,0.0,0.0,0.0
HK.31,Omicron,"nsp2:G424S,RdRp:D63N","G2075A,G13627A",RdRp:D63N,,,,40.18,89.69,0.0,0.0
HK.33,Omicron,"nsp2:I613,nsp3:L1746","C2644T,T7957C","RdRp:D63N,N:A359S",,,,0.0,0.0,0.0,0.0
HK.6,Omicron,S:E484D,A23014T,,S:E484D,,,19.21,40.18,8.26,16.29
HK.7,Omicron,"RdRp:D63N,RdRp:E277V,ORF3a:S60","G13627A,A14270T,C25572T",RdRp:D63N,,,,135.82,192.61,0.0,0.0
HK.8,Omicron,"nsp3:H1274,nsp6:F269,RdRp:D63N,S:Q52H,S:L455F,ORF3a:S60,ORF10:S23F","C6541T,C11779T,G13627A,G21718T,G22927T,C25572T,C29625T","RdRp:D63N,S:Q52H",S:L455F,,,0.0,0.0,0.0,0.0
HK.8.1,Omicron,"RdRp:D63N,S:D1153Y,ORF3a:S171L","G13627A,G25019T,C25904T","RdRp:D63N,S:D1153Y",,,,0.0,0.0,0.0,0.0
HK.9,Omicron,"nsp6:F269,RdRp:D63N,S:R190K","C11779T,G13627A,G22131A","RdRp:D63N,S:R190K",,,,0.0,0.0,0.0,0.0
HN.1,Omicron,"nsp9:N95,nsp15:S147I,S:A67S","C12970T,G20060T,G21761T",S:A67S,,,,53.53,93.25,0.0,0.0
HN.2,Omicron,"nsp2:Y441,nsp3:I542,nsp9:N95,RdRp:P232S","T2128C,C4345T,C12970T,C14134T",,,,,69.57,144.65,0.0,0.0
HN.2.1,Omicron,"nsp2:Y441,nsp9:N95,GFL:T12,nsp16:K160R,S:A701V","T2128C,C12970T,T13060G,A21137G,C23664T",S:A701V,,,,0.0,0.0,0.0,0.0
HN.3.1,Omicron,"nsp2:G165C,nsp2:Y441,nsp9:N95,nsp16:L126,nsp16:K160R,S:S494P","G1298T,T2128C,C12970T,C21036T,A21137G,T23042C",,S:S494P,,,0.0,0.0,0.0,0.0
HN.4,Omicron,"nsp2:Y441,nsp3:F1089,nsp9:N95","T2128C,C5986T,C12970T",,,,,77.72,114.17,64.82,104.7
HN.4.1,Omicron,"nsp15:T114,S:A1020S,N:G34","G19962T,G24620T,G28375A",S:A1020S,,,,0.0,0.0,0.0,0.0
HN.6,Omicron,"nsp2:Y441,nsp3:D1115A","T2128C,A6063C",,,,,31.37,60.85,0.0,0.0
HN.7,Omicron,"nsp2:Y441,nsp3:C1223,nsp9:N95","T2128C,C6388T,C12970T",,,,,0.0,0.0,0.0,0.0
HN.8,Omicron,S:Y248YKRD,T22304TACAAACGGG,S:Y248YKRD,,,,,,,
HP.1.1,Omicron,"3CLpro:T93I,N:F274","C10332T,C29095T",3CLpro:T93I,,,,0.0,0.0,0.0,0.0
HQ.1,Omicron,"nsp2:V6,nsp3:T350I,3CLpro:D187","C823T,C3768T,C10615T",,,,,0.0,0.0,0.0,0.0
HR.1,Omicron,"N:D98,N:I292V","C28567T,A29147G",N:I292V,,,,50.97,91.87,0.0,0.0
HR.1.1,Omicron,"3CLpro:V104I,ORF7b:H42,N:D98","G10364A,C27881T,C28567T",3CLpro:V104I,,,,0.0,0.0,0.0,0.0
HS.1,Omicron,"nsp3:A1033V,nsp13:A296,S:T478R","C5817T,T17124C,C22995G",,S:T478R,,,0.0,0.0,0.0,0.0
HS.1.1,Omicron,"nsp3:A1033V,3CLpro:S10,3CLpro:F66","C5817T,T10084A,C10252T",,,,,0.0,0.0,0.0,0.0
HT.1,Omicron,"nsp3:Y693,3CLpro:L50,S:N148T","T4798C,T10204C,A22005C",S:N148T,,,,0.0,0.0,0.0,0.0
HT.2,Omicron,"3CLpro:L50,S:T51I","T10204C,C21714T",S:T51I,,,,82.98,193.17,0.0,0.0
HU.1.1,XBB.X,"nsp8:R75,nsp13:V558","A12316G,A17910G",,,,,0.0,0.0,0.0,0.0
HV.1.1,Omicron,"nsp2:A510V,nsp3:S1039L,nsp4:A380V,nsp8:T141M,nsp13:T214,S:Q52H,S:F157L,S:F306,S:K444T,S:F456L,ORF7a:G38,ORF10:S23F","C2334T,C5835T,C9693T,C12513T,A16878T,G21718T,C22033A,C22480T,A22893C,T22930A,A27507C,C29625T","S:Q52H,S:F157L","S:F456L,S:K444T",,,27.52,55.56,0.0,0.0
HV.1.10,Omicron,"nsp3:S1039L,RdRp:D760,S:Q52H","C5835T,C15720T,G21718T",S:Q52H,,,,31.73,66.2,0.0,0.0
HV.1.11,Omicron,"nsp3:A1280V,S:V130,ORF10:S23F","C6558T,C21952T,C29625T",,,,,0.0,0.0,0.0,0.0
HV.1.3,Omicron,"nsp3:S1039L,S:Q493L","C5835T,A23040T",,S:Q493L,,,0.0,0.0,0.0,0.0
HV.1.4,Omicron,"nsp3:S1039L,S:A1078S,ORF8:Q18*","C5835T,G24794T,C27945T","S:A1078S,ORF8:Q18*",,,,28.86,73.82,0.0,0.0
HV.1.5,Omicron,"nsp3:S1039L,S:L1265F","C5835T,C25355T",S:L1265F,,,,30.57,62.01,0.0,0.0
HV.1.6.1,Omicron,"nsp3:S1039L,nsp3:P1200S,M:N121","C5835T,C6317T,C26885T",,,,,31.61,63.65,0.0,0.0
HV.1.7,Omicron,"nsp3:A1321,N:S78G","T6682C,A28505G",N:S78G,,,,0.0,0.0,0.0,0.0
HV.1.8,Omicron,"nsp2:P96,S:T208M","C1093T,C22185T",S:T208M,,,,30.06,51.98,0.0,0.0
HV.1.9,Omicron,"nsp1:L27,S:N211I","C346T,A22194T",S:N211I,,,,0.0,0.0,0.0,0.0
HV.2,Omicron,"nsp2:D40,RdRp:V493","C925T,C14919A",,,,,0.0,0.0,0.0,0.0
HW.1,,"nsp3:C296F,nsp13:T250,nsp13:I333V,S:A989,N:A173V,N:S176","G3606T,T16986C,A17233G,T24529C,C28791T,C28801T","nsp13:I333V,N:A173V",,,,,,,
HW.1.1,,"nsp3:H1841Y,nsp13:V2,nsp13:I333V,M:S99","C8240T,T16242A,A17233G,T26819C",nsp13:I333V,,,,,,,
HY.1,Omicron,"nsp13:A296,S:T478R,S:V1122M","T17124C,C22995G,G24926A",S:V1122M,S:T478R,,,27.6,61.4,0.0,0.0
HZ.1,Omicron,"3CLpro:F223L,S:D568","T10721C,C23266T",3CLpro:F223L,,,,24.78,50.04,0.0,0.0
HZ.2,Omicron,"3CLpro:F223L,nsp6:H11Y,nsp14:Y154,ORF3a:L71I","T10721C,C11003T,C18501T,C25603A",3CLpro:F223L,,,,30.7,70.98,0.0,0.0
HZ.3,Omicron,"nsp6:I124T,nsp14:Y154","T11343C,C18501T",,,,,117.36,284.22,0.0,0.0
JA.1,XBB.2.3.X,"nsp2:C50,nsp3:D505,nsp3:T1004I,ORF7a:A13V","C955T,C4234T,C5730T,C27431T,G29706T",,,,,0.0,0.0,0.0,0.0
JC.1,XBB.X,"nsp14:P429,nsp16:A199","A19326T,G21255A",,,,,0.0,0.0,0.0,0.0
JC.2,XBB.X,"nsp2:V284,S:L335S","T1657C,T22566C",,S:L335S,,,0.0,0.0,0.0,0.0
JC.3,XBB.X,"3CLpro:A94,S:L335S,S:N703I,ORF10:M1I","C10336T,T22566C,A23670T,G29560T",S:N703I,S:L335S,,,0.0,0.0,0.0,0.0
JC.5,XBB.X,"nsp14:D172,S:L335S","C18555T,T22566C",,S:L335S,,,35.7,63.47,27.02,59.08
JC.5.1,XBB.X,"RdRp:D740,nsp14:D172","C15660T,C18555T",,,,,8.0,15.42,0.0,0.0
JD.1,Omicron,"RdRp:N215,RdRp:V398","C14085T,A14634G",,,,,16.53,31.19,25.65,47.18
JD.1.1,Omicron,"RdRp:A250V,nsp14:V483","C14189T,C19488T",,,,,16.23,33.14,7.65,15.0
JD.1.1.1,Omicron,"nsp3:L1393,RdRp:N215,RdRp:A250V,RdRp:V398,nsp14:C382,nsp14:V483,S:Y248H,S:A475V,ORF8:A65V,N:D3","C6896T,C14085T,C14189T,A14634G,C19185T,C19488T,T22304C,C22986T,C28087T,T28282C","ORF8:A65V,S:Y248H",S:A475V,,,29.67,49.02,0.0,0.0
JD.1.1.2,Omicron,"nsp2:K82,S:E583D","A1051G,G23311C",S:E583D,,,,0.0,0.0,0.0,0.0
JD.1.1.3,Omicron,"RdRp:V398,S:T470N,ORF6:N28D","A14634G,C22971A,A27283G",,S:T470N,,,0.0,0.0,0.0,0.0
JD.1.1.5,Omicron,"RdRp:N215,RdRp:A250V,RdRp:N713","C14085T,C14189T,C15579T",,,,,37.62,58.74,0.0,0.0
JD.1.1.6,Omicron,"RdRp:A250V,nsp13:L455","C14189T,T17599C",,,,,0.0,0.0,0.0,0.0
JD.1.1.7,Omicron,"nsp3:L1393,RdRp:N215,RdRp:A250V,RdRp:V398,nsp14:V483,nsp15:R206S,S:A475V","C6896T,C14085T,C14189T,A14634G,C19488T,G20238T,C22986T",,S:A475V,,,0.0,0.0,0.0,0.0
JD.1.1.8,Omicron,"nsp3:N276K,nsp3:P329","T3547A,A3706T",,,,,39.1,76.66,0.0,0.0
JD.1.2,Omicron,"nsp14:V381,N:D3","A19182G,T28282C",,,,,0.0,0.0,0.0,0.0
JD.1.2.1,Omicron,"S:E554Q,S:P1162S,N:P365L","G23222C,C25046T,C29367T","S:E554Q,S:P1162S,N:P365L",,,,0.0,0.0,0.0,0.0
JD.2,Omicron,"nsp3:P512,RdRp:N215,nsp15:H337Y","G4255A,C14085T,C20629T",,,,,0.0,0.0,0.0,0.0
JE.1.1,XBB.2.3.X,"nsp3:L1700,nsp9:I65V,nsp13:V187I,M:N121,ORF8:E106Q","C7819G,A12878G,G16795A,C26885T,G28209C",,,,,21.62,44.74,0.0,0.0
JE.1.1.1,XBB.2.3.X,"nsp3:L1700,nsp13:V187I,ORF3a:F43,ORF8:E106Q","C7819G,G16795A,C25521T,G28209C",,,,,17.78,33.6,0.0,0.0
JF.1.1,Omicron,"nsp3:I385,nsp8:A102","C3874T,A12397G",,,,,41.52,68.95,63.24,96.58
JF.1.1.2,Omicron,"nsp3:I385,nsp3:S1212L,nsp4:N131","C3874T,C6354T,C8947T",,,,,41.62,69.12,64.77,98.44
JF.2,Omicron,"nsp8:A102,ORF8:Q91H","A12397G,G28166C",,,,,0.0,0.0,0.0,0.0
JF.3,Omicron,"nsp2:H237Y,nsp8:A102,S:Q14H","C1514T,A12397G,G21604T",S:Q14H,,,,0.0,0.0,0.0,0.0
JF.4,Omicron,"nsp2:S32L,3CLpro:K269,nsp8:A102,nsp14:D222Y","C900T,A10861G,A12397G,G18703T",,,,,30.85,68.17,53.81,98.47
JG.1,Omicron,"nsp2:R362C,S:C336,S:T732I,ORF10:S23F","C1889T,C22570T,C23757T,C29625T",S:T732I,,,,0.0,0.0,0.0,0.0
JG.2,Omicron,"nsp2:R362C,S:Q52H,S:G75V,S:F456L,ORF10:S23F","C1889T,G21718T,G21786T,T22930A,C29625T","S:Q52H,S:G75V",S:F456L,,,0.0,0.0,0.0,0.0
JG.3,Omicron,"nsp2:R362C,nsp3:T1456I,S:S704L","C1889T,C7086T,C23673T",S:S704L,,,,12.48,26.76,16.51,29.66
JG.3.1,Omicron,"nsp3:T1456I,nsp3:S1738L","C7086T,C7932T",,,,,6.56,12.72,8.13,15.86
JG.3.2,Omicron,"nsp2:R362C,nsp2:A510V,nsp3:G1001S,nsp3:T1456I,nsp4:A380V,nsp13:T214,S:Q52H,S:F306,S:C336,S:N450D,S:L455F,S:F456L,S:S704L,ORF7a:G38,N:N8,ORF10:S23F","C1889T,C2334T,G5720A,C7086T,C9693T,A16878T,G21718T,C22480T,C22570T,A22910G,G22927T,T22930A,C23673T,A27507C,T28297C,C29625T","S:Q52H,S:S704L","S:N450D,S:L455F,S:F456L",,,32.08,62.09,0.0,0.0
JG.3.3,Omicron,"nsp2:R362C,nsp2:A510V,nsp13:T214,S:V83F,S:C336,S:L455F,S:F456L,S:S704L,ORF10:S23F","C1889T,C2334T,A16878T,G21809T,C22570T,G22927T,T22930A,C23673T,C29625T","S:S704L,S:V83F","S:L455F,S:F456L",,,0.0,0.0,0.0,0.0
JG.3.4,Omicron,"nsp2:L553,nsp3:T1456I,S:C336","C2462T,C7086T,C22570T",,,,,0.0,0.0,0.0,0.0
JG.4,Omicron,"nsp2:I293,nsp2:R362C,S:C336","C1684T,C1889T,C22570T",,,,,0.0,0.0,0.0,0.0
JH.1,Omicron,"nsp14:E364K,S:I666V,M:V143","G19129A,A23558G,G26951C",S:I666V,,,,0.0,0.0,0.0,0.0
JH.2,Omicron,"nsp13:T530A,S:V483","A17824G,T23011A",nsp13:T530A,,,,0.0,0.0,0.0,0.0
JJ.1,Omicron,"nsp16:K160R,ORF3a:I47V,ORF3a:P240L","A21137G,A25531G,C26111T",ORF3a:P240L,,,,0.0,0.0,0.0,0.0
JK.1,Omicron,N:I131R,T28665G,N:I131R,,,,18.25,38.07,0.0,0.0
JM.1,Omicron,"nsp2:M418I,RdRp:N209,S:K147N,S:E819,N:S318","G2059A,T14067C,A22003T,A24019G,G29227T",S:K147N,,,,0.0,0.0,72.6,160.48
JM.2,Omicron,"RdRp:N209,S:R78S","T14067C,G21796T",S:R78S,,,,0.0,0.0,0.0,0.0
JN.1.1,BA.2.86.X,"nsp2:F319L,nsp6:L259,ORF7b:F19L","C1762A,C11747T,T27810C",,,,,4.79,9.13,5.88,11.3
JN.1.1.1,BA.2.86.X,"nsp2:F319L,nsp4:G196,S:T572I","C1762A,C9142T,C23277T",S:T572I,,,,0.0,0.0,32.03,81.71
JN.1.1.10,BA.2.86.X,"nsp2:F319L,nsp6:L259,S:P665","C1762A,C11747T,C23557T",,,,,0.0,0.0,0.0,0.0
JN.1.1.2,BA.2.86.X,"nsp2:F319L,S:G181E","C1762A,G22104A",S:G181E,,,,0.0,0.0,0.0,0.0
JN.1.1.4,BA.2.86.X,"nsp2:F319L,nsp4:G196,S:V1264L","C1762A,C9142T,G25352T",S:V1264L,,,,0.0,0.0,0.0,0.0
JN.1.1.7,BA.2.86.X,"nsp2:F319L,nsp6:L259,S:S31F","C1762A,C11747T,C21654T",S:S31F,,,,0.0,0.0,0.0,0.0
JN.1.1.8,BA.2.86.X,"nsp2:G15,nsp3:S1265I","C850T,G6513T",,,,,0.0,0.0,0.0,0.0
JN.1.12,BA.2.86.X,"S:F456V,ORF7a:A8T","T22928G,G27415A",,S:F456V,,,0.0,0.0,0.0,0.0
JN.1.13,BA.2.86.X,"S:A1087S,ORF3a:L96,M:L124","G24821T,C25680T,C26894T",S:A1087S,,,,8.66,17.92,2.95,5.25
JN.1.14,BA.2.86.X,"S:R346S,ORF3a:L96","A22600T,C25680T",,S:R346S,,,0.0,0.0,0.0,0.0
JN.1.15.1,BA.2.86.X,"S:A688V,ORF3a:R122S","C23625T,A25758T",S:A688V,,,,5.85,6.27,0.0,0.0
JN.1.17,BA.2.86.X,"nsp14:N518,S:Y369","C19593T,T22669C",,,,,38.88,89.11,0.0,0.0
JN.1.18.2,JN.1.18.X,"nsp3:L538,S:F59S,S:D253","C4331T,T21738C,T22321C",S:F59S,,,,6.79,13.36,0.0,0.0
JN.1.18.4,JN.1.18.X,"S:L492,ORF6:I60T","T23036C,T27380C",,,,,0.0,0.0,0.0,0.0
JN.1.19,BA.2.86.X,"nsp2:T85,ORF8:I71V","C1060T,A28104G",ORF8:I71V,,,,20.75,46.03,27.16,43.13
JN.1.2,BA.2.86.X,"nsp16:T91M,S:M1229I,ORF7b:F19L","C20930T,G25249T,T27810C",,,,,25.21,58.85,52.91,129.86
JN.1.2.1,BA.2.86.X,"nsp16:T91M,S:H1101Y,ORF7b:F19L","C20930T,C24863T,T27810C",S:H1101Y,,,,0.0,0.0,0.0,0.0
JN.1.22,BA.2.86.X,"nsp2:S325F,nsp13:Y217","C1779T,C16887T",,,,,5.75,11.0,6.79,13.14
JN.1.23.1,BA.2.86.X,"nsp2:A127V,S:N137K","C1185T,T21973G",S:N137K,,,,0.0,0.0,0.0,0.0
JN.1.25.1,BA.2.86.X,"nsp1:D147,nsp3:F1533,M:R42","C706T,C7318T,G26648A",,,,,0.0,0.0,0.0,0.0
JN.1.27,BA.2.86.X,"nsp3:L495,S:M153I,M:L124","C4202T,G22021T,C26894T",S:M153I,,,,76.4,97.28,0.0,0.0
JN.1.28.1,BA.2.86.X,"nsp3:P822L,nsp14:I502","C5184T,C19545T,A29700G",,,,,5.12,9.04,0.0,0.0
JN.1.29,BA.2.86.X,"nsp4:T461A,ORF7b:F19L","A9935G,T27810C",,,,,24.58,50.07,74.01,115.68
JN.1.29.1,BA.2.86.X,"nsp2:I613,nsp4:T461A","C2644T,A9935G",,,,,26.57,51.32,0.0,0.0
JN.1.31,BA.2.86.X,"nsp14:L383,ORF3a:V13L","C19186T,G25429T",,,,,4.86,9.17,6.96,13.23
JN.1.38,BA.2.86.X,"nsp3:G282,nsp9:L44,nsp14:R212K,nsp14:C285,S:R403K,ORF7b:F19L,N:Q229K","T3565C,C12815T,G18674A,C18894T,G22770A,T27810C,C28958A",N:Q229K,S:R403K,,,32.81,48.98,0.0,0.0
JN.1.38.1,BA.2.86.X,"nsp14:R212K,ORF3a:G100S","G18674A,G25690A",,,,,36.33,49.32,0.0,0.0
JN.1.39,BA.2.86.X,"nsp3:V21,ORF7b:F19L","G2782T,T27810C",,,,,4.5,8.5,18.3,39.94
JN.1.39.1,BA.2.86.X,"nsp3:N1398,nsp16:L126F,ORF3a:V80A","T6913C,C21034T,T25631C",,,,,0.0,0.0,0.0,0.0
JN.1.39.3,BA.2.86.X,"nsp3:V21,nsp3:N931,S:A67V","G2782T,C5512T,C21762T",S:A67V,,,,0.0,0.0,0.0,0.0
JN.1.4.1,BA.2.86.X,"nsp1:T170I,S:E654V","C774T,A23523T",S:E654V,,,,0.0,0.0,0.0,0.0
JN.1.4.2,BA.2.86.X,"nsp14:A138,S:N185D","T18453C,A22115G",S:N185D,,,,25.63,58.05,0.0,0.0
JN.1.4.5,BA.2.86.X,"nsp14:A138,ORF8:S103L","T18453C,C28201T",,,,,5.28,10.01,28.19,51.43
JN.1.4.7,BA.2.86.X,"nsp1:T170I,ORF3a:G18D","C774T,G25445A",ORF3a:G18D,,,,17.48,31.84,22.46,41.5
JN.1.4.8,BA.2.86.X,"nsp1:T170I,RdRp:A46","C774T,T13578C",,,,,4.56,8.54,0.0,0.0
JN.1.40,BA.2.86.X,"nsp3:G282,GFL:N105,S:S31P,S:F58Y,S:L455S","T3565C,T13339C,T21653C,T21735A,T22926C","S:F58Y,S:S31P",S:L455S,,,0.0,0.0,0.0,0.0
JN.1.41,BA.2.86.X,"RdRp:T680,S:S1252F,N:T271","C15480T,C25317T,A29086T",S:S1252F,,,,41.64,111.82,0.0,0.0
JN.1.42.1,BA.2.86.X,"nsp3:G954,S:F59S","C5581A,T21738C",S:F59S,,,,0.0,0.0,0.0,0.0
JN.1.43,BA.2.86.X,"S:K1255,ORF7b:F19L","A25327G,T27810C",,,,,28.35,68.87,7.32,13.98
JN.1.43.1,BA.2.86.X,"nsp14:V483,S:K1255,N:F315","C19488T,A25327G,C29218T",,,,,25.45,59.6,0.0,0.0
JN.1.45,BA.2.86.X,"nsp3:G282,nsp9:L44,nsp14:P239,N:Q229K","T3565C,C12815T,G18756T,C28958A",N:Q229K,,,,29.87,69.07,0.0,0.0
JN.1.46,BA.2.86.X,"nsp3:N722,nsp4:L353F,nsp6:R252K","T4885C,C9611T,G11727A",nsp6:R252K,,,,32.85,46.05,0.0,0.0
JN.1.47,BA.2.86.X,"nsp3:G1625,nsp3:N1785","C7594T,C8074T",,,,,4.68,8.83,0.0,0.0
JN.1.47.1,BA.2.86.X,"nsp3:N1785,S:S221L","C8074T,C22224T",S:S221L,,,,0.0,0.0,0.0,0.0
JN.1.47.2,BA.2.86.X,"nsp2:H194Y,nsp3:N1785","C1385T,C8074T",,,,,20.37,46.35,0.0,0.0
JN.1.48.1,BA.2.86.X,"nsp3:L1791,ORF3a:A99V","C8092T,C25688T",,,,,2.25,3.87,2.51,4.39
JN.1.48.3,BA.2.86.X,"nsp3:T398,ORF3a:S60F","T3913A,C25571T",,,,,0.0,0.0,0.0,0.0
JN.1.5,BA.2.86.X,"nsp13:V348M,nsp13:V348A","G17278A,T17279C",,,,,5.57,10.67,6.22,12.05
JN.1.50,BA.2.86.X,"nsp3:A579,S:L249F,S:F456L","C4456T,G22309C,T22930G",S:L249F,S:F456L,,,0.0,0.0,9.45,18.93
JN.1.50.2,BA.2.86.X,"nsp3:A579,nsp3:N722S,nsp3:N722","C4456T,A4884G,T4885C",,,,,0.0,0.0,0.0,0.0
JN.1.55,BA.2.86.X,"nsp2:K219R,nsp3:G282","A1461G,T3565C",,,,,22.12,52.32,0.0,0.0
JN.1.55.1,BA.2.86.X,"nsp3:T199I,3CLpro:L67","C3315T,G10255A",,,,,0.0,0.0,0.0,0.0
JN.1.55.2,BA.2.86.X,"nsp2:K219R,nsp15:P270H","A1461G,C20429A",,,,,0.0,0.0,0.0,0.0
JN.1.57,BA.2.86.X,"nsp7:L35,nsp13:A296S,ORF3a:S58","A11947G,G17122T,C25566T",,,,,0.0,0.0,0.0,0.0
JN.1.59,BA.2.86.X,"nsp3:A386S,ORF7b:F19L","G3875T,T27810C",,,,,0.0,0.0,30.76,55.5
JN.1.59.1,BA.2.86.X,"nsp3:A386S,nsp3:E912","G3875T,A5455G",,,,,0.0,0.0,0.0,0.0
JN.1.6,BA.2.86.X,"nsp3:G282,S:R355","T3565C,G22627A",,,,,28.54,50.88,22.61,42.55
JN.1.6.1,BA.2.86.X,"nsp2:A31D,nsp3:G282,nsp3:K1155R,S:R355,S:L455S,ORF7b:F19L","C897A,T3565C,A6183G,G22627A,T22926C,T27810C",,S:L455S,,,29.65,52.3,20.85,39.06
JN.1.62,BA.2.86.X,"nsp2:L635,nsp3:A690V","C2710A,C4788T",,,,,0.0,0.0,0.0,0.0
JN.1.63.1,BA.2.86.X,"nsp3:D695E,nsp3:A1711S","T4804G,G7850T",,,,,0.0,0.0,0.0,0.0
JN.1.64,BA.2.86.X,"nsp3:G282,nsp3:N1329S","T3565C,A6705G",,,,,13.87,31.41,13.94,29.89
JN.1.65,BA.2.86.X,"nsp3:P778,ORF3a:L85F","A5053G,G25647T",,,,,4.62,8.25,13.77,24.34
JN.1.65.1,BA.2.86.X,"nsp3:T1334I,3CLpro:P122","C6720T,A10420G",,,,,8.44,13.95,11.03,18.4
JN.1.67.1,BA.2.86.X,"nsp3:V481,M:L46F","G4162A,G26660T",,,,,8.1,16.66,0.0,0.0
JN.1.7,JN.1.7.X,"S:E1150D,ORF3a:S58","G25012T,C25566T",S:E1150D,,,,8.91,18.99,3.55,6.5
JN.1.7.1,JN.1.7.X,"S:R346K,S:T572I,S:E1150D,ORF3a:S58,ORF7b:F19L","G22599A,C23277T,G25012T,C25566T,T27810C","S:T572I,S:E1150D",S:R346K,,,0.0,0.0,9.68,21.32
JN.1.7.2,JN.1.7.X,"nsp14:C39F,S:E1150D,ORF3a:S58","G18155T,G25012T,C25566T",S:E1150D,,,,15.7,39.57,0.0,0.0
JN.1.7.4,JN.1.7.X,"nsp3:G282,S:F456L,S:T572I,S:E1150D,ORF3a:S58,ORF7b:F19L,N:Q229K","T3565C,T22928C,C23277T,G25012T,C25566T,T27810C,C28958A","N:Q229K,S:T572I,S:E1150D",S:F456L,,,0.0,0.0,15.56,22.58
JN.1.7.5,JN.1.7.X,"3CLpro:P132S,S:E1150D","C10448T,G25012T","3CLpro:P132S,S:E1150D",,,,21.38,36.59,0.0,0.0
JN.1.7.6,JN.1.7.X,"nsp3:P791S,S:D936,ORF3a:S58,N:N228","C5090T,C24370T,C25566T,C28957T",,,,,0.0,0.0,0.0,0.0
JN.1.7.8,JN.1.7.X,"nsp3:D1707,N:P365L","C7840T,C29367T",N:P365L,,,,0.0,0.0,0.0,0.0
JN.1.7.9,JN.1.7.X,"nsp3:N1705,S:E1150D,ORF3a:S58","C7834T,G25012T,C25566T",S:E1150D,,,,0.0,0.0,0.0,0.0
JN.1.8.1,BA.2.86.X,"nsp9:K81,S:T572I,ORF7a:T28I","A12928G,C23277T,C27476T",S:T572I,,,,14.1,29.82,13.79,29.87
JN.1.8.3,BA.2.86.X,"RdRp:L127,RdRp:V495","C13821T,C14925T",,,,,5.69,10.66,5.74,10.83
JN.1.8.4,BA.2.86.X,"nsp9:K81,S:G946R,ORF7a:T28I","A12928G,G24398A,C27476T",S:G946R,,,,0.0,0.0,0.0,0.0
JN.1.9.1,BA.2.86.X,"nsp2:A31D,nsp3:G282,nsp3:K1155R,nsp3:N1708S,nsp3:T1858,nsp3:A1892T,nsp4:A380V,nsp6:V24F,nsp9:L44,GFL:N105,RdRp:S772,S:V127F,S:F157,S:R158R?,S:Q183H,S:L216F,S:V445D,S:N450D,S:L452,S:L455S,S:N481K,S:E554K,S:A570V,S:T572I,S:P621S,S:P1143L,M:D3H,M:F53,M:A104V,ORF7b:F19L,N:Q229K","C897A,T3565C,A6183G,A7842G,C8293T,G8393A,C9693T,G11042T,C12815T,T13339C,T15756A,G21941T,TT22031T,A22034AG,G22111T,C22208T,T22896A,A22910G,C22916T,T22926C,T23005A,G23222A,C23271T,C23277T,C23423T,C24990T,G26529C,C26681T,C26833T,T27810C,C28958A","S:R158R?,S:Q183H,S:P621S,S:L216F,N:Q229K,S:T572I,S:E554K,S:P1143L,S:A570V,M:D3H","S:N450D,S:V445D,S:N481K,S:L455S",,,0.0,0.0,13.1,27.18
JN.13,BA.2.86.X,"nsp3:V238L,nsp3:K1155R,RdRp:T319,M:T30A","G3431T,A6183G,A14397G,A26610G",,,,,0.0,0.0,0.0,0.0
JN.13.1,BA.2.86.X,"RdRp:T319,S:A475V","A14397G,C22986T",,S:A475V,,,0.0,0.0,0.0,0.0
JN.14,BA.2.86.X,"nsp3:V238L,S:S680F,ORF10:C19","G3431T,C23601T,C29614T",,,,,0.0,0.0,0.0,0.0
JN.18,BA.2.86.X,"nsp6:V24F,nsp6:Y214","G11042T,T11614C",,,,,23.83,48.46,15.46,29.17
JN.2,BA.2.86.X,"nsp2:Y441C,nsp3:K1155R","A2127G,A6183G",,,,,6.32,12.15,7.03,13.58
JN.2.1,BA.2.86.X,"nsp2:Y441C,S:S31F","A2127G,C21654T",S:S31F,,,,0.0,0.0,0.0,0.0
JN.2.2,BA.2.86.X,"nsp2:Y441C,N:G25C","A2127G,G28346T",N:G25C,,,,0.0,0.0,0.0,0.0
JN.2.3,BA.2.86.X,"nsp2:Y441C,S:V193L","A2127G,G22139T",S:V193L,,,,0.0,0.0,0.0,0.0
JN.2.5,BA.2.86.X,"nsp2:Y441C,nsp3:T734","A2127G,C4921T",,,,,0.0,0.0,0.0,0.0
JN.3.2.1,BA.2.86.X,"nsp3:P74S,nsp3:T1269I,N:H300Y","C2939T,C6525T,C29171T",N:H300Y,,,,0.0,0.0,0.0,0.0
JN.3.3,BA.2.86.X,"nsp3:Q974,S:Y38","A5641G,C21676T",,,,,0.0,0.0,36.9,73.42
JN.5.1,BA.2.86.X,"nsp3:I77,ORF8:K53","T2950A,A28052G",,,,,0.0,0.0,0.0,0.0
JN.7,BA.2.86.X,"nsp3:T619,nsp3:L620,S:G594S,N:Q229K","A4576T,T4579A,G23342A,C28958A","N:Q229K,S:G594S",,,,0.0,0.0,0.0,0.0
JN.9,BA.2.86.X,"nsp2:A31D,nsp3:V238L,nsp3:K1155R,nsp3:N1708S,nsp6:V24F,RdRp:S772,S:S50L,S:L216F,S:A570V,S:P1143L,S:M1229I,N:Q229K","C897A,G3431T,A6183G,A7842G,G11042T,T15756A,C21711T,C22208T,C23271T,C24990T,G25249A,C28958A","S:L216F,N:Q229K,S:P1143L,S:A570V,S:S50L",,,,0.0,0.0,0.0,0.0
JQ.1,BA.2.86.X,"nsp2:A385,nsp9:A30,S:T95I,S:V445D,N:Q229K","C222T,C1960T,T12775C,C21846T,T22896A,C28958A","N:Q229K,S:T95I",S:V445D,,,0.0,0.0,0.0,0.0
JQ.2.1,BA.2.86.X,"nsp3:L75,nsp6:L142F,nsp9:A30","G2944A,C11396T,T12775C",,,,,0.0,0.0,0.0,0.0
JS.1,XBB.2.3.X,"GFL:I55V,S:S256T","A13187G,T22328A",S:S256T,,,,0.0,0.0,0.0,0.0
JS.2,XBB.2.3.X,"nsp6:M100I,GFL:I55V","G11272T,A13187G",,,,,0.0,0.0,0.0,0.0
JV.2,Omicron,"nsp3:S1428L,nsp9:A22V,N:E253,ORF10:M1V","C7002T,C12750T,G29032A,A29558G",,,,,0.0,0.0,0.0,0.0
JY.1,XBB.2.3.X,"nsp3:P968L,3CLpro:P241L,nsp16:K182R","C5622T,C10776T,A21203G",3CLpro:P241L,,,,0.0,0.0,0.0,0.0
JY.1.1,XBB.2.3.X,"nsp16:K182R,S:E654K","A21203G,G23522A",S:E654K,,,,0.0,0.0,0.0,0.0
JZ.1,Omicron,"nsp13:A296,nsp14:L157F,S:N856","T17124C,C18508T,C24130T",,,,,0.0,0.0,0.0,0.0
K.2,,"nsp14:Q108,ORF3a:R30H","G18363A,G25481A",ORF3a:R30H,,,,,,,
KA.1,Omicron,"3CLpro:L50,ORF7b:C41W","T10204C,T27878G",,,,,67.07,122.59,0.0,0.0
KB.1,Omicron,"3CLpro:L282,S:E654V","G10900A,A23523T",S:E654V,,,,0.0,0.0,0.0,0.0
KB.2,Omicron,"RdRp:P412,S:R214H","C14676A,G22203A",S:R214H,,,,0.0,0.0,0.0,0.0
KB.4,Omicron,"nsp2:A510V,nsp8:A3,nsp13:T214,S:Q52H,S:T95I,ORF10:S23F","C2334T,C12100G,A16878T,G21718T,C21846T,C29625T","S:Q52H,S:T95I",,,,0.0,0.0,0.0,0.0
KC.1,Omicron,"nsp8:T187I,S:F490L","C12651T,T23030C",,S:F490L,,,15.72,29.3,20.31,36.5
KC.1.1,Omicron,"nsp2:S543F,S:F490L","C2433T,T23030C",,S:F490L,,,22.57,52.66,20.3,36.49
KE.1,XBB.X,"nsp9:P80L,nsp16:N235,S:F79S,S:F186S,N:N150,N:T165","C12924T,T21363C,T21798C,T22119C,T28723C,A28768G","S:F79S,S:F186S",,,,0.0,0.0,68.98,88.28
KE.2,XBB.X,"nsp1:P62L,RdRp:T604","C450T,T15252G",,,,,0.0,0.0,0.0,0.0
KE.3,XBB.X,"nsp6:L72S,RdRp:T739I,nsp16:N235","T11187C,C15656T,T21363C",,,,,0.0,0.0,40.44,114.0
KF.1,Omicron,"nsp1:G180,nsp2:E457K,nsp4:D246,S:A475V,N:R191","G805A,G2174A,T9292C,C22986T,C28846T",,S:A475V,,,0.0,0.0,0.0,0.0
KH.1,XBB.2.3.X,"nsp3:L1700,nsp8:K61","C7819G,G12274A",,,,,0.0,0.0,0.0,0.0
KK.1,Omicron,"nsp3:N276K,nsp3:P329,S:D1153H","T3547A,A3706T,G25019C",S:D1153H,,,,33.68,90.08,0.0,0.0
KL.1,Omicron,"nsp3:P1200S,nsp6:L16,M:N121","C6317T,C11020T,C26885T",,,,,0.0,0.0,0.0,0.0
KL.1.1,Omicron,"nsp14:Q354H,ORF3a:S40P","G19101T,T25510C",,,,,0.0,0.0,0.0,0.0
KP.1,BA.2.86.X,"nsp3:G282,nsp3:T1465I,nsp3:N1708S,nsp9:L44,nsp13:T366,S:K1086R,S:V1104L","T3565C,C7113T,A7842G,C12815T,G17334T,A24819G,G24872T","S:K1086R,S:V1104L",,,,3.53,5.85,6.33,13.32
KP.1.1.1,BA.2.86.X,"nsp15:L162F,S:K182N,S:K1086R","C20104T,A22108C,A24819G","S:K1086R,S:K182N",,,,5.91,12.2,9.95,17.78
KP.1.1.2,BA.2.86.X,"nsp2:D449,nsp13:T366,S:K1086R,S:P1162S","T2152C,G17334T,A24819G,C25046T","S:K1086R,S:P1162S",,,,0.0,0.0,0.0,0.0
KP.1.1.3,BA.2.86.X,"nsp3:N760,S:K1086R","C4999T,A24819G",S:K1086R,,,,5.41,5.7,2.37,4.13
KP.1.1.5,BA.2.86.X,"nsp13:T366,S:F59S,S:K1086R","G17334T,T21738C,A24819G","S:K1086R,S:F59S",,,,4.41,8.37,0.0,0.0
KP.2.11,KP.2.X,"nsp3:T1275I,nsp14:Y446,S:L56V","C6543T,T19377C,T21728G",S:L56V,,,,0.0,0.0,0.0,0.0
KP.2.14,KP.2.X,"S:S31F,S:G184V","C21654T,G22113T","S:G184V,S:S31F",,,,4.27,8.73,0.0,0.0
KP.2.15,KP.2.X,"3CLpro:K269,nsp13:T366","A10861G,G17334T",,,,,2.59,4.19,0.0,0.0
KP.2.15.1,KP.2.X,"nsp3:L287,3CLpro:K269","A3580G,A10861G",,,,,0.0,0.0,0.0,0.0
KP.2.16,KP.2.X,"S:A411,ORF8:F6S","T22795G,T27910C",,,,,0.0,0.0,12.18,22.09
KP.2.19,KP.2.X,"RdRp:Y420,S:L425","T14700C,T22835C",,,,,4.13,7.72,0.0,0.0
KP.2.2,KP.2.X,"S:F59L,S:A411","T21737C,T22795G",S:F59L,,,,6.14,12.14,5.34,13.15
KP.2.20,KP.2.X,"RdRp:D445N,nsp13:T366","G14773A,G17334T",RdRp:D445N,,,,0.0,0.0,0.0,0.0
KP.2.23,KP.2.X,"nsp4:V315,ORF8:G77S","T9499G,G28122A",ORF8:G77S,,,,0.0,0.0,5.28,12.36
KP.2.24,KP.2.X,"nsp4:N244,RdRp:V493,nsp13:T366","C9286T,C14919T,G17334T",,,,,0.0,0.0,0.0,0.0
KP.2.3,KP.2.X,"nsp13:T366,ORF3a:K67N","G17334T,G25593T",,,,,1.94,3.26,5.44,10.69
KP.2.3.1,KP.2.X,"nsp3:T1465I,nsp13:T366,S:A475V,S:V1104L,ORF3a:K67N,N:G147","C7113T,G17334T,C22986T,G24872T,G25593T,C28714T",S:V1104L,S:A475V,,,0.0,0.0,0.0,0.0
KP.2.3.2,KP.2.X,"nsp3:T1465I,nsp13:T366,S:G184V,S:V1104L,ORF3a:K67N,M:L93,N:G147","C7113T,G17334T,G22113T,G24872T,G25593T,C26801T,C28714T","S:V1104L,S:G184V",,,,0.0,0.0,0.0,0.0
KP.2.3.3,KP.2.X,"S:N185T,N:G147","A22116C,C28714T",S:N185T,,,,4.73,9.12,0.0,0.0
KP.2.3.4,KP.2.X,"RdRp:Q773,ORF3a:K67N,N:G147","A15759G,G25593T,C28714T",,,,,5.26,7.94,0.0,0.0
KP.2.3.5,KP.2.X,"S:K535T,ORF3a:K67N","A23166C,G25593T",S:K535T,,,,0.0,0.0,8.27,14.53
KP.2.3.6,KP.2.X,"S:T572I,ORF3a:K67N,N:G147","C23277T,G25593T,C28714T",S:T572I,,,,0.0,0.0,0.0,0.0
KP.2.3.7,KP.2.X,"nsp3:T1303A,ORF3a:K67N","A6626G,G25593T",,,,,6.63,9.96,0.0,0.0
KP.2.4,KP.2.X,"nsp3:T1465I,nsp13:T366,S:T250N,S:A411,S:V1104L","C7113T,G17334T,C22311A,T22795G,G24872T","S:T250N,S:V1104L",,,,0.0,0.0,0.0,0.0
KP.2.5,KP.2.X,"S:N185D,S:A411","A22115G,T22795G",S:N185D,,,,0.0,0.0,0.0,0.0
KP.2.6,KP.2.X,"S:W64R,S:A411","T21752A,T22795G",S:W64R,,,,4.37,8.24,0.0,0.0
KP.2.8,KP.2.X,"nsp3:T1465I,S:S60P,S:H1159","C7113T,T21740C,T25039C",S:S60P,,,,0.0,0.0,0.0,0.0
KP.2.9,KP.2.X,"RdRp:N713,nsp13:T366,S:T572I","C15579T,G17334T,C23277T",S:T572I,,,,0.0,0.0,0.0,0.0
KP.3,KP.3.X,"nsp13:T366,S:Q493E,S:V1104L","G17334T,C23039G,G24872T",,S:Q493E,,,2.85,4.72,3.63,6.7
KP.3.1,KP.3.X,"RdRp:T644,nsp15:K34,S:Q493E","G15372T,A19722G,C23039G",,S:Q493E,,,2.57,4.17,5.85,6.59
KP.3.1.1,KP.3.1.1.X,GFL:S33C,A13121T,,,,,1.61,2.59,1.91,3.24
KP.3.1.2,KP.3.X,"nsp3:A1311V,nsp8:D175,RdRp:T644,nsp15:K34,S:S151I,M:N207","C6651T,C12616T,G15372T,A19722G,G22014T,C27143T",S:S151I,,,,0.0,0.0,0.0,0.0
KP.3.1.4,KP.3.X,"nsp14:P151S,nsp15:K34","C18490T,A19722G",,,,,5.32,11.32,7.38,10.51
KP.3.1.5,KP.3.X,"nsp15:K34,S:N556K","A19722G,C23230A",S:N556K,,,,0.0,0.0,0.0,0.0
KP.3.1.6,KP.3.X,"RdRp:T644,nsp14:N422","G15372T,T19305C",,,,,5.49,10.72,7.08,11.9
KP.3.1.7,KP.3.X,"nsp16:H186,N:A381","C21216T,C29416A",,,,,0.0,0.0,0.0,0.0
KP.3.1.8,KP.3.X,"nsp4:E227,nsp15:K34,S:F59S","A9235G,A19722G,T21738C",S:F59S,,,,0.0,0.0,0.0,0.0
KP.3.2.1,KP.3.X,"nsp13:T366,S:A263V,S:Q493E","G17334T,C22350T,C23039G",S:A263V,S:Q493E,,,0.0,0.0,0.0,0.0
KP.3.2.2,KP.3.X,"S:W258R,S:Q493E","T22334C,C23039G",S:W258R,S:Q493E,,,0.0,0.0,7.1,14.18
KP.3.2.3,KP.3.X,"S:Q493E,ORF3a:S40P","C23039G,T25510C",,S:Q493E,,,5.3,11.81,4.82,8.97
KP.3.2.4,KP.3.X,"nsp3:T1465I,nsp13:T366,S:C432,S:Q493E,ORF3a:L73F","C7113T,G17334T,C22858T,C23039G,C25609T",,S:Q493E,,,0.0,0.0,7.32,15.18
KP.3.2.5,KP.3.X,"S:V62F,S:Q493E","G21746T,C23039G",S:V62F,S:Q493E,,,6.47,11.03,0.0,0.0
KP.3.3,KP.3.X,"nsp3:T1465I,S:Q493E,S:F1148,N:P6,N:G204A","C7113T,C23039G,C25006T,C28291A,G28884C",,S:Q493E,,,4.81,10.5,4.88,9.15
KP.3.3.1,KP.3.X,"ORF3a:F87S,N:P6","T25652C,C28291A",,,,,5.32,7.85,0.0,0.0
KP.3.3.2,KP.3.X,"S:A435S,S:F1148,N:G204A","G22865T,C25006T,G28884C",,,,,0.0,0.0,0.0,0.0
KP.3.3.3,KP.3.X,"nsp4:V290,N:P6,N:G204A","A9424T,C28291A,G28884C",,,,,4.72,9.35,0.0,0.0
KP.3.3.4,KP.3.X,"nsp3:I549L,nsp3:T1848,S:F1148,N:P6,N:G204A","A4364C,T8263C,C25006T,C28291A,G28884C",,,,,0.0,0.0,6.64,18.61
KP.3.4,KP.3.X,"nsp3:T1465I,ORF3a:F43,ORF3a:L73F","C7113T,C25521T,C25609T",,,,,5.97,7.19,0.0,0.0
KP.3.5,KP.3.X,"nsp2:A205,nsp3:T1465I,nsp13:T366,S:Q493E,S:V1104L","C1420T,C7113T,G17334T,C23039G,G24872T",S:V1104L,S:Q493E,,,4.8,9.15,0.0,0.0
KP.4.1,BA.2.86.X,"nsp3:I1117,nsp3:T1465I,nsp15:Y88","C6070T,C7113T,C19884T",,,,,6.21,12.66,6.37,12.35
KP.4.1.1,BA.2.86.X,"nsp3:I1117,nsp15:Y88,S:W258R","C6070T,C19884T,T22334A",S:W258R,,,,0.0,0.0,0.0,0.0
KP.4.1.2,BA.2.86.X,"nsp3:H563,S:L441V","T4408C,C22883G",,S:L441V,,,0.0,0.0,0.0,0.0
KP.4.1.3,BA.2.86.X,"nsp2:M418V,nsp3:Q842","A2057G,A5245G",,,,,6.42,8.92,0.0,0.0
KP.4.2,BA.2.86.X,"nsp3:I1117,S:K187R","C6070T,A22122G",S:K187R,,,,7.22,15.16,0.0,0.0
KP.4.2.1,BA.2.86.X,"RdRp:T141I,S:S31F","C13862T,C21654T",S:K187R,,,,0.0,0.0,0.0,0.0
KP.4.2.2,BA.2.86.X,"nsp3:I1117,N:D297","C6070T,T29164C",,,,,0.0,0.0,0.0,0.0
KR.1,BA.2.86.X,"nsp4:G196,N:N75","C9142T,C28498T",,,,,5.85,11.9,0.0,0.0
KR.1.1,BA.2.86.X,"nsp4:G196,S:F59L,N:N75","C9142T,T21737C,C28498T",S:F59L,,,,0.0,0.0,0.0,0.0
KR.1.3,BA.2.86.X,"RdRp:T393,S:N657","T14619C,C23533T",,,,,0.0,0.0,0.0,0.0
KR.3,BA.2.86.X,"nsp2:F319L,nsp4:G196,S:F456L","C1762A,C9142T,T22930A",,S:F456L,,,0.0,0.0,0.0,0.0
KS.1,BA.2.86.X,"S:F59S,ORF3a:L96,M:L124","T21738C,C25680T,C26894T",S:F59S,,,,8.43,17.39,6.32,13.09
KT.1,XBB.2.3.X,"S:K77R,ORF3a:S195C","A21792G,C25976G","ORF3a:S195C,S:K77R",,,,5.45,10.26,23.37,53.14
KT.1.1,XBB.2.3.X,"nsp2:G481S,nsp3:P1103S,RdRp:G839","G2246A,C6026T,G15957A",nsp3:P1103S,,,,32.4,59.34,0.0,0.0
KT.1.2,XBB.2.3.X,"nsp3:P1103S,nsp15:N277S,S:K77R,ORF3a:S195C","C6026T,A20450G,A21792G,C25976G","ORF3a:S195C,S:K77R,nsp3:P1103S",,,,11.45,24.73,0.0,0.0
KU.2,BA.2.86.X,"nsp16:A199,S:F456L,ORF7b:F19L","C228T,G21255T,T22928C,T27810C",,S:F456L,,,0.0,0.0,0.0,0.0
KU.2.1,BA.2.86.X,"nsp15:K60,M:S211","G19800A,C27155A",,,,,0.0,0.0,0.0,0.0
KU.2.2,BA.2.86.X,"nsp16:A199,S:D290","C228T,G21255T,C22432T",,,,,0.0,0.0,0.0,0.0
KV.2,BA.2.86.X,"nsp3:P153L,nsp14:A138,ORF8:S103L","C3177T,T18453C,C28201T",,,,,14.82,31.71,0.0,0.0
KW.1,BA.2.86.X,"3CLpro:S10,nsp14:I502","T10084A,C19545T",,,,,4.51,7.85,0.0,0.0
KW.1.1,BA.2.86.X,"nsp14:R485K,nsp14:I502","G19493A,C19545T",,,,,3.61,6.16,0.0,0.0
KY.1,BA.2.86.X,"nsp6:N205D,ORF7a:T28I","A11585G,C27476T",,,,,0.0,0.0,0.0,0.0
KZ.1.1,BA.2.86.X,"nsp2:F319L,nsp13:V169F","C1762A,G16741T",,,,,0.0,0.0,0.0,0.0
L.2,,"nsp14:E490,E:F23","G19509A,C26313T",,,,,,,,
L.3,,"S:Y1155F,M:E135","A25026T,A26927G",S:Y1155F,,,,,,,
L.4,,"nsp14:S357G,S:V1104L","A19108G,G24872C",S:V1104L,,,,,,,
LA.2,BA.2.86.X,"nsp3:G282,nsp3:T686,S:R346I","T3565C,C4777T,G22599T",,S:R346I,,,0.0,0.0,0.0,0.0
LB.1.2.2,LB.1.X,"nsp15:G17R,S:Q183H,S:Y489","G19669A,G22111T,C23029T",S:Q183H,,,,3.69,6.9,0.0,0.0
LB.1.2.3,LB.1.X,"nsp3:I750F,S:F175L","A4967T,T22085C",S:F175L,,,,0.0,0.0,0.0,0.0
LB.1.3,LB.1.X,"nsp14:T31I,S:Q183H","C18131T,G22111T",S:Q183H,,,,3.08,5.31,5.52,10.77
LB.1.3.1,LB.1.X,"nsp14:T31I,N:T379I","C18131T,C29409T",,,,,1.85,3.15,1.91,3.23
LB.1.3.2,LB.1.X,"nsp14:T31I,S:Q183H,S:V1094","C18131T,G22111T,C24844T",S:Q183H,,,,4.95,9.68,0.0,0.0
LB.1.3.3,LB.1.X,"nsp4:N203,S:K182R","C9163T,A22107G",S:K182R,,,,0.0,0.0,0.0,0.0
LB.1.4.1,LB.1.X,"nsp3:A655V,S:R190S,ORF7b:L18","C4683T,G22132T,A27809G",S:R190S,,,,4.83,9.55,0.0,0.0
LB.1.4.3,LB.1.X,"nsp3:A655V,RdRp:V495,S:A845S","C4683T,C14925T,G24095T",S:A845S,,,,0.0,0.0,0.0,0.0
LB.1.5,LB.1.X,"nsp14:T97I,S:P1143S","C18329T,C24989T",S:P1143S,,,,0.0,0.0,0.0,0.0
LB.1.7,LB.1.X,"nsp3:L689F,nsp16:G155","C4784T,G21123T",,,,,2.14,3.6,0.0,0.0
LB.1.7.1,LB.1.X,"nsp3:L689F,nsp13:A152,S:N148T","C4784T,T16692C,A22005C",S:N148T,,,,4.43,8.26,0.0,0.0
LB.1.7.2,LB.1.X,"nsp16:G155,S:S680P","G21123T,T23600C",S:S680P,,,,6.64,9.04,0.0,0.0
LB.1.7.3,LB.1.X,"nsp16:G155,S:R34C","G21123T,C21662T",S:R34C,,,,0.0,0.0,0.0,0.0
LB.1.8,LB.1.X,"nsp9:V110,S:Q183H","A13015G,G22111T",S:Q183H,,,,8.05,12.71,0.0,0.0
LD.1,BA.2.86.X,"nsp2:T497I,ORF3a:A99V","C2295T,C25688T",,,,,5.32,10.22,0.0,0.0
LE.1.1,BA.2.86.X,"nsp1:T170I,S:F456V,ORF3a:G18D","C774T,T22928G,G25445A",ORF3a:G18D,S:F456V,,,0.0,0.0,0.0,0.0
LE.1.2,BA.2.86.X,"RdRp:T739I,ORF3a:G18D","C15656T,G25445A",ORF3a:G18D,,,,0.0,0.0,0.0,0.0
LE.1.3.1,BA.2.86.X,"nsp3:I1559,ORF7a:A66V","T7396C,C27590T",,,,,0.0,0.0,0.0,0.0
LF.1,BA.2.86.X,"nsp3:A450T,nsp3:S1285F","G4067A,C6573T",,,,,2.75,4.85,3.66,6.63
LF.1.1,BA.2.86.X,"nsp13:D105,nsp14:D291","C16551T,C18912T",,,,,6.92,7.72,0.0,0.0
LF.1.1.1,BA.2.86.X,"nsp3:A450T,nsp14:D390","G4067A,T19209C",,,,,5.19,9.85,0.0,0.0
LF.2,BA.2.86.X,"nsp2:K67R,ORF3a:Y184H","A1005G,T25942C",ORF3a:Y184H,,,,0.0,0.0,0.0,0.0
LF.3.1,BA.2.86.X,"nsp3:G954,GFL:A32V","C5581A,C13119T",,,,,5.3,10.84,0.0,0.0
LF.3.1.1,BA.2.86.X,"3CLpro:T280,S:P1143S","C10894T,C24989T",S:P1143S,,,,5.04,9.55,0.0,0.0
LF.4,BA.2.86.X,"GFL:T115I,N:R385K","C13368T,G29427A",N:R385K,,,,0.0,0.0,0.0,0.0
LF.4.1,BA.2.86.X,"nsp4:L90,N:R385K","G8824A,G29427A",N:R385K,,,,0.0,0.0,0.0,0.0
LF.5,BA.2.86.X,"nsp13:R442,S:T33A","G17562T,A21659G",S:T33A,,,,0.0,0.0,0.0,0.0
LF.6,BA.2.86.X,"nsp2:K22,nsp3:L151","A871G,T3172G",,,,,0.0,0.0,0.0,0.0
LF.7,BA.2.86.X,"nsp9:L69,S:S31P","G12892A,T21653C",S:S31P,,,,0.0,0.0,0.0,0.0
LF.8.1.1,BA.2.86.X,"nsp4:Y205,nsp14:T131","C9169T,A18432T",,,,,0.0,0.0,0.0,0.0
LF.9.1,BA.2.86.X,"S:S60P,S:N185D","T21740C,A22115G","S:S60P,S:N185D",,,,4.17,8.54,0.0,0.0
LG.1,BA.2.86.X,"nsp14:R485K,S:T95S","G19493A,C21846G",S:T95S,,,,0.0,0.0,0.0,0.0
LK.2.1,JN.1.7.X,"S:L455V,S:G669","T22925G,T23569C",,S:L455V,,,0.0,0.0,0.0,0.0
LL.1,BA.2.86.X,"S:N185D,S:S680F,N:F346","A22115G,C23601T,C29311T","S:N185D,S:S680F",,,,10.57,18.16,0.0,0.0
LM.1,BA.2.86.X,"nsp1:D147,M:R42,N:D225","C706T,G26648A,C28948T",,,,,0.0,0.0,0.0,0.0
LP.1,BA.2.86.X,"nsp3:N760,RdRp:N356,S:K1086R","C4999T,T14508C,A24819G",S:K1086R,,,,4.55,8.49,0.0,0.0
LP.1.1,BA.2.86.X,"nsp3:N760,RdRp:N356,S:S255F,S:K1086R","C4999T,T14508C,C22326T,A24819G","S:K1086R,S:S255F",,,,0.0,0.0,0.0,0.0
LP.1.2,BA.2.86.X,"RdRp:N356,S:R190S,S:K1086R","T14508C,G22132T,A24819G","S:K1086R,S:R190S",,,,5.71,7.71,0.0,0.0
LP.2,BA.2.86.X,"nsp15:T325I,S:S71Y","C20594T,C21774A",S:S71Y,,,,0.0,0.0,0.0,0.0
LP.3,BA.2.86.X,"RdRp:R285S,nsp13:T366","C14293A,G17334T",,,,,0.0,0.0,0.0,0.0
LP.4,BA.2.86.X,"nsp3:N760,nsp3:T1465I,nsp13:T366,S:T572I,S:K1086R,S:V1104L,ORF8:A65V","C4999T,C7113T,G17334T,C23277T,A24819G,G24872T,C28087T","S:K1086R,S:T572I,ORF8:A65V",,,,0.0,0.0,0.0,0.0
LQ.1,JN.1.18.X,"RdRp:D260,S:T250N","C14220T,C22311A",S:T250N,,,,5.04,9.92,0.0,0.0
LQ.1.1,JN.1.18.X,"RdRp:D260,S:P272H","C14220T,C22377A",S:P272H,,,,9.95,15.43,0.0,0.0
LQ.3,JN.1.18.X,"nsp3:T943I,S:T250N","C5547T,C22311A",S:T250N,,,,0.0,0.0,0.0,0.0
LS.1,JN.1.18.X,"nsp3:E122D,nsp3:A1766T","G3085T,G8015A",nsp3:A1766T,,,,0.0,0.0,0.0,0.0
LU.1,BA.2.86.X,"nsp14:N410,S:A688V,ORF3a:R122S","C19269T,C23625T,A25758T",S:A688V,,,,0.0,0.0,0.0,0.0
LU.2,BA.2.86.X,"nsp16:H69,ORF3a:R122S","T20865C,A25758T",,,,,5.24,6.61,0.0,0.0
LU.2.1.1,BA.2.86.X,"S:K182N,S:A688V,N:P67","A22108C,C23625T,T28474C","S:S60P,S:L176F,S:K182N",,,,0.0,0.0,0.0,0.0
LV.1,BA.2.86.X,"nsp4:G224,RdRp:D303N","C9226T,G14347A",,,,,0.0,0.0,0.0,0.0
LW.1,KP.3.X,"S:K182E,ORF3a:S40P","A22106G,T25510C",S:K182E,,,,4.48,8.58,4.92,11.61
LY.1,JN.1.18.X,"nsp15:H249,S:Q183P","T20367C,A22110C",S:Q183P,,,,4.15,8.45,0.0,0.0
LZ.1.1,JN.1.18.X,"nsp2:I560V,N:A152T","A2483G,G28727A",N:A152T,,,,10.69,16.93,0.0,0.0
LZ.2,JN.1.18.X,"nsp2:D409,nsp3:K408E,nsp14:N334","T2032C,A3941G,C19041T",,,,,0.0,0.0,0.0,0.0
LZ.2.1,JN.1.18.X,"nsp3:K408E,ORF10:Q29*","A3941G,C29642T",,,,,0.0,0.0,0.0,0.0
M.2,,"nsp2:G339S,nsp3:D218E,nsp3:M951I,nsp13:A368S,S:L54","G1820A,C3373A,G5572T,G17338T,G21724A",,,,,,,,
MA.1,JN.1.18.X,"RdRp:D60,ORF10:N36S","C13620T,A29664G",,,,,4.66,8.93,0.0,0.0
MB.1.1,BA.2.86.X,"S:S31F,S:K182N","C21654T,A22108C","S:S31F,S:K182N",,,,4.06,8.32,0.0,0.0
MC.10,KP.3.1.1.X,"nsp8:D175,nsp13:D32","C12616T,C16332T",,,,,3.93,4.77,0.0,0.0
MC.11,KP.3.1.1.X,"nsp8:D175,nsp13:Y398","C12616T,C17430T",,,,,4.28,8.28,5.29,10.56
MC.11.1,KP.3.1.1.X,"nsp13:Y398,S:S256L","C17430T,C22329T",S:S256L,,,,0.0,0.0,0.0,0.0
MC.13,KP.3.1.1.X,"3CLpro:Y209,GFL:S33C","C10681T,A13121T",,,,,4.28,7.76,4.7,9.16
MC.13.1,KP.3.1.1.X,"3CLpro:Y209,nsp14:L117","C10681T,C18388T",,,,,4.23,7.68,0.0,0.0
MC.14,KP.3.1.1.X,"nsp8:D175,S:T259R","C12616T,C22338G",S:T259R,,,,0.0,0.0,0.0,0.0
MC.15,KP.3.1.1.X,"nsp8:D175,GFL:S33C,S:K182R","C12616T,A13121T,A22107G",S:K182R,,,,0.0,0.0,0.0,0.0
MC.16,KP.3.1.1.X,"nsp3:V57,nsp8:D175","G2890A,C12616T",,,,,4.27,8.25,5.67,11.3
MC.2,KP.3.1.1.X,"nsp3:T1465I,nsp8:D175,GFL:S33C,RdRp:T644,nsp13:T366,nsp15:K34,S:Q493E,S:A845S,S:V1104L","C7113T,C12616T,A13121T,G15372T,G17334T,A19722G,C23039G,G24095T,G24872T",,,,,3.79,7.17,0.0,0.0
MC.2.1,KP.3.1.1.X,"nsp8:D175,GFL:S33C,RdRp:T644,nsp15:K34,S:R237K","C12616T,A13121T,G15372T,A19722G,G22272A",S:R237K,,,,0.0,0.0,0.0,0.0
MC.3,KP.3.1.1.X,"nsp8:D175,GFL:S33C,RdRp:T644,nsp13:T481,N:D81","C12616T,A13121T,G15372T,G17679T,T28516C",,,,,0.0,0.0,0.0,0.0
MC.6,KP.3.1.1.X,"nsp2:P589S,nsp8:D175","C2570T,C12616T",,,,,3.9,7.4,4.67,8.9
MC.8,KP.3.1.1.X,"nsp4:L417,nsp8:D175,GFL:S33C,RdRp:T644,nsp13:T366,nsp15:K34,S:Q493E","C9803T,C12616T,A13121T,G15372T,G17334T,A19722G,C23039G",,S:Q493E,,,0.0,0.0,0.0,0.0
MC.8.1,KP.3.1.1.X,"nsp8:D175,nsp13:Y582","C12616T,T17982C",,,,,0.0,0.0,0.0,0.0
MC.9,KP.3.1.1.X,"nsp15:K34,ORF3a:K75N","A19722G,G25617T",,,,,3.69,6.89,5.06,6.63
MD.1,BA.2.86.X,"nsp3:N1329S,nsp6:R252K,S:F456L","A6705G,G11727A,T22930A",nsp6:R252K,S:F456L,,,0.0,0.0,0.0,0.0
MD.1.1,BA.2.86.X,"nsp3:N1329S,S:N679S","A6705G,A23598G",S:N679S,,,,0.0,0.0,0.0,0.0
MD.2,BA.2.86.X,"nsp4:T37I,S:F456V","C8664T,T22928G",,S:F456V,,,0.0,0.0,0.0,0.0
MD.3.1,BA.2.86.X,"nsp3:N1329S,nsp4:F255,ORF3a:L106F,N:D128","A6705G,C9319T,C25708T,C28657T",,,,,0.0,0.0,0.0,0.0
MF.1,BA.2.86.X,"nsp3:T1334I,S:Y37,ORF3a:L85F","C6720T,T21673C,G25647T",,,,,0.0,0.0,0.0,0.0
MF.2,BA.2.86.X,"nsp3:Y1055,S:W64L,S:S689,ORF3a:L85F","C5884T,G21753T,T23629C,G25647T",S:W64L,,,,0.0,0.0,0.0,0.0
MG.1,BA.2.86.X,"nsp4:V328I,nsp15:L162F","G9536A,C20104T",,,,,0.0,0.0,0.0,0.0
MH.1,LB.1.X,"nsp14:T31I,S:Q183H,S:T572I,S:V1094","C18131T,G22111T,C23277T,C24844T","S:Q183H,S:T572I",,,,0.0,0.0,0.0,0.0
MK.1,KP.3.X,"nsp14:N422,nsp15:K34,S:S31F","T19305C,A19722G,C21654T",S:S31F,,,,4.21,7.71,6.51,12.87
MK.2,KP.3.X,"nsp15:K34,S:D745G","A19722G,A23796G",S:D745G,,,,0.0,0.0,0.0,0.0
MK.3,KP.3.X,"nsp14:N422,S:V445G","T19305C,T22896G",,S:V445G,,,0.0,0.0,0.0,0.0
ML.2,KP.3.X,"nsp3:T1465I,nsp4:V290,nsp13:T366,S:Q493E,S:Q677H,S:V1104L,S:F1148,N:P6,N:G204A","C7113T,A9424T,G17334T,C23039G,G23593T,G24872T,C25006T,C28291A,G28884C","S:Q677H,S:V1104L",S:Q493E,,,0.0,0.0,0.0,0.0
MM.1,KP.3.X,"RdRp:T644,nsp14:P151S,S:S680P","G15372T,C18490T,T23600C",S:S680P,,,,0.0,0.0,0.0,0.0
MM.2,KP.3.X,"S:G35R,ORF10:N5","G21665C,C29572T",S:G35R,,,,0.0,0.0,0.0,0.0
MN.1,JN.1.18.X,"nsp2:R365,S:S689N","A1900G,G23628A",S:S689N,,,,0.0,0.0,0.0,0.0
MQ.1,JN.1.7.X,"nsp3:D1707,S:D979","C7840T,T24499C",,,,,0.0,0.0,0.0,0.0
MQ.2,JN.1.7.X,"nsp3:D1707,S:NFKNLR185R,S:T678I","C7840T,TAATTTCAAAAATCTTA22114TA,C23595T",S:T678I,,,,0.0,0.0,0.0,0.0
MR.1,KP.3.X,"nsp3:V418I,nsp3:I549L,S:Q493E,S:F1148,N:G204A","G3971A,A4364C,C23039G,C25006T,G28884C",,S:Q493E,,,0.0,0.0,0.0,0.0
MS.1,BA.2.86.X,"nsp3:E122G,nsp3:G954","A3084G,C5581A",,,,,0.0,0.0,0.0,0.0
MT.1,BA.2.86.X,"ORF7a:F59I,ORF7a:F59Y,ORF7a:F59L,N:P279S","T27568A,T27569A,T27570A,C29108T",,,,,0.0,0.0,0.0,0.0
MU.1,BA.2.86.X,"nsp2:F561,nsp14:T378I,S:K1086R","C2488T,C19172T,A24819G",S:K1086R,,,,4.42,10.58,0.0,0.0
MV.1,BA.2.86.X,"S:S31F,S:F456V","C21654T,T22928G",S:S31F,S:F456V,,,2.26,3.53,0.0,0.0
MW.1,KP.2.X,"S:Q239R,ORF3a:K67N","A22278G,G25593T",S:Q239R,,,,5.58,7.54,0.0,0.0
N.1,,"ORF6:I33T,N:I292T","T27299C,T29148C,C29769T",N:I292T,,,,,,,
N.2,,"nsp2:Q431L,nsp2:L578","A2097T,T2537C",,,,,,,,
N.3,,"E:V58F,N:I292T","G26416T,T29148C",N:I292T,,,,,,,
N.4,,"nsp2:K557R,N:I292T","A2475G,T29148C",N:I292T,,,,,,,
N.5,,"S:Q414R,N:G287","A22803G,G29134A",,S:Q414R,,,,,,
N.6,,"nsp3:Y882,nsp3:V1806,N:I292T","C5365T,G8137T,T29148C",N:I292T,,,,,,,
N.7,,"nsp3:K790,ORF7a:ARSVS79A","A5089G,CCAGATCAGTTTC27629C",,,,,,,,
N.8,,"nsp13:L227,ORF6:KVSIWNLD23N","G16917T,AAGTTTCCATTTGGAATCTTGA27269A",,,,,,,,
P.1,Gamma,"nsp1:D156,nsp3:K977Q","T733C,A5648C",,,,https://opendata.ncats.nih.gov/variant/datasets?query=P.1,74.9,160.62,71.58,153.93
P.1.1,Gamma,"nsp3:D10,nsp3:S370L,nsp3:K977Q,nsp3:P1200,nsp3:V1298,nsp9:Y31,RdRp:G137,RdRp:D140,S:T1027I,N:P80R","C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,T13851C,C13860T,C24642T,C28512G","S:T1027I,N:P80R",,,,0.0,0.0,3085.73,4076.92
P.1.10,Gamma,"nsp2:H208Y,nsp3:P1200","C1427T,A6319G",,,,,579.3,1457.0,0.0,0.0
P.1.13,Gamma,"nsp1:D156,3CLpro:V186F","T733C,G10610T",3CLpro:V186F,,,,1740.66,4586.95,0.0,0.0
P.1.14,Gamma,"nsp4:S184N,S:N606","G9105A,C23380T",,,,,0.0,0.0,146.99,303.02
P.1.15,Gamma,"nsp9:Y31,nsp14:D30","C12778T,C18129T",,,,,105.17,230.15,86.9,180.01
P.1.16,Gamma,"nsp3:K977Q,nsp3:V1298,ORF3a:I118M","A5648C,A6613G,A25746G",,,,,0.0,0.0,727.99,1256.2
P.1.17,Gamma,"nsp1:L27,nsp1:D156,nsp9:Y31","C346T,T733C,C12778T",,,,,506.91,960.71,287.61,572.21
P.1.17.1,Gamma,"nsp1:L27,nsp3:N1329D,nsp15:V127F","C346T,A6704G,G19999T",,,,,0.0,0.0,104284.26,9887537.0
P.1.2,Gamma,"nsp3:T1002I,N:Y172","C5724T,C28789T",,,,,0.0,0.0,84.15,185.7
P.1.6,Gamma,"nsp1:D156,3CLpro:D187,S:T20N","T733C,C10615T,C21621A",S:T20N,,,,0.0,0.0,256.64,578.23
P.1.7.1,Gamma,"nsp3:D110,3CLpro:T21I,S:T20N","T3049C,C10116T,C21621A",S:T20N,,,,0.0,0.0,0.0,0.0
P.1.8,Gamma,"S:C1235F,ORF3a:S216L","G25266T,C26039T",,,,,0.0,0.0,0.0,0.0
P.1.9,Gamma,"nsp1:P109,nsp14:P203L,S:Q675H","T592C,C18647T,G23587C",S:Q675H,,,,0.0,0.0,0.0,0.0
P.2,Zeta,3CLpro:L205V,T10667G,,,,https://opendata.ncats.nih.gov/variant/datasets?query=P.2,529.44,1149.47,130.36,280.78
P.3,Theta,"nsp3:D736G,nsp6:D112E,nsp7:N69,nsp13:A368V,S:E1092K","A4926G,C11308A,C12049T,C17339T,G24836A","S:E1092K,nsp3:D736G",,,,0.0,0.0,0.0,0.0
P.7,,"nsp7:L71F,nsp13:A312,ORF3a:T151I","C12053T,C17172T,C25844T",,,,,,,,
Q.1,Alpha,"nsp2:S36,nsp3:T183I,nsp3:A890D,nsp3:F1089,nsp3:I1412T,RdRp:D260,RdRp:P412,RdRp:H613,RdRp:T912,S:A570D,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:R52I,ORF8:Y73C,N:D3H,N:D3V,N:D3E,N:S235F","C913T,C3267T,C5388A,C5986T,T6954C,C14220T,C14676T,C15279T,T16176C,C23271A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T","N:D3V,S:S982A,S:T716I,N:D3E,S:A570D,N:D3H,S:D1118H,N:S235F,ORF8:Y73C,ORF8:Q27*",,,,907.9,2454.14,483.15,984.24
Q.3,Alpha,M:V70L,G26730C,,,,,121.25,251.58,127.5,269.82
Q.4,Alpha,"nsp2:S36,nsp3:T183I,nsp8:Q24R,RdRp:T912,S:A570D,S:D1118H,ORF8:R52I,ORF8:Y73C,N:D3H,N:D3V,N:D3E,N:S235F","C913T,C3267T,A12162G,T16176C,C23271A,G24914C,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T","N:D3V,N:D3E,S:A570D,N:D3H,S:D1118H,N:S235F,ORF8:Y73C",,,,84.92,182.48,503.54,1038.25
Q.7,Alpha,"nsp3:E1450D,nsp13:R594","A7069C,T18018C",,,,,0.0,0.0,0.0,0.0
R.1,,nsp13:G439R,G17551A,,,,,,,,
R.2,,"S:P1162,S:E1202Q","A25048G,G25166C",S:E1202Q,,,,,,,
U.1,,"nsp1:V60,nsp2:I101,ORF3a:V77F,ORF8:H17","T445C,C1108T,G25621T,C27944T",,,,,,,,
V.1,,"nsp3:T1189,S:C432,S:A694,M:L93,ORF8:H17,ORF10:V30L","C6286T,C22858T,C23644T,C26801G,C27944T,G29645T",,,,,,,,
V.2,,"nsp14:V236I,S:A694","G18745A,C23644T",,,,,,,,
W.1,,"nsp13:R409,nsp13:I480,S:P1079,ORF3a:W131C","C17463T,C17676T,T24799C,G25785T",,,,,,,,
W.3,,"nsp4:L417,S:M1229T","G9805T,T25248C",,,,,,,,
W.4,,nsp15:I327L,A20599C,,,,,,,,
XA,,"nsp2:M405T,nsp3:N760,nsp4:I292,RdRp:P169S,nsp15:E264K,S:T549I,S:A570D,S:T716I,S:S982A,S:D1118H,ORF3a:D155Y,ORF8:Q27*,ORF8:R52I,ORF8:Y73C,N:D3H,N:D3V,N:D3E,N:S235F","T2019C,C4999T,C9430T,C13945T,G20410A,C23208T,C23271A,C23709T,T24506G,G24914C,G25855T,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T","N:D3V,S:S982A,S:T549I,S:T716I,N:D3E,S:A570D,N:D3H,S:D1118H,N:S235F,ORF8:Y73C,ORF8:Q27*",,,,,,,
XAA,Omicron,"nsp8:N118,nsp14:L439","C12445T,A19356G",,,,,0.0,0.0,0.0,0.0
XAB,Omicron,"nsp2:A555,nsp3:A889,nsp3:SL1265I,nsp13:I258,S:I410","C2470T,T5386G,AGTT6512A,C17010T,C22792T",,,,,0.0,0.0,0.0,0.0
XAC,Omicron,"nsp4:A146V,RdRp:D760,ORF3a:Y212","C8991T,C15720T,C26028T",,,,,0.0,0.0,0.0,0.0
XAD,Omicron,"nsp2:T149A,N:S202C","A1250G,A28877T",,,,,0.0,0.0,0.0,0.0
XAE,Omicron,"nsp3:V752,nsp3:E1224A,nsp4:L417,nsp6:R93C","G4975A,A6390C,C9803T,C11249T",,,,,0.0,0.0,0.0,0.0
XAF,Omicron,"nsp6:T181I,nsp6:V182F,S:Q957,ORF3a:H78Y","C11514T,G11516T,A24433G,C25624T",,,,,0.0,0.0,0.0,0.0
XAG,Omicron,"nsp2:A555,nsp3:L46,nsp13:F422,S:I410","C2470T,C2857T,C17502T,C22792T",,,,,0.0,0.0,0.0,0.0
XAH,Omicron,"nsp13:A336S,nsp14:Y69","G17242T,C18246T",,,,,0.0,0.0,0.0,0.0
XAJ,Omicron,"nsp6:Y234,RdRp:D523,S:N658S","C11674T,T15009C,A23535G",S:N658S,,,,0.0,0.0,0.0,0.0
XAK,Omicron,"nsp3:D736,nsp7:N69,ORF7a:G38","C4927T,C12049T,A27507G",,,,,0.0,0.0,323376.0,5592.98
XAL,Omicron,"nsp3:E49G,S:L8F","A2865G,G21586T",,,,,0.0,0.0,0.0,0.0
XAM,Omicron,"nsp2:A555,nsp3:K38R,nsp3:A889,nsp3:SL1265I,nsp4:L438F,nsp6:T181I,S:I410,S:Q493R,S:Q957,ORF3a:H78Y","C2470T,A2832G,T5386G,AGTT6512A,C9866T,C11514T,C22792T,A23040G,A24433G,C25624T",,S:Q493R,,,0.0,0.0,0.0,0.0
XAN,Omicron,"nsp3:L1752M,nsp13:P529L,ORF7a:C15,ORF7a:F101","C7973A,C17822T,T27438C,T27696C",nsp13:P529L,,,,0.0,0.0,0.0,0.0
XAP,Omicron,"nsp3:I896,M:D3G","C5407A,A26530G",M:D3G,,,,0.0,0.0,0.0,0.0
XAS,Omicron,"nsp8:E23,S:IHV68I,S:V213G,S:L452R,S:F486V,ORF6:D61V,ORF8:Q18*","G12160A,TACATGT21765T,T22200G,T22917G,T23018G,A27383T,C27945T","S:V213G,ORF8:Q18*","S:L452R,S:F486V",,,288.77,821.79,0.0,0.0
XAT,Omicron,"nsp4:A146V,3CLpro:L75F,nsp14:F426,ORF3a:L140F,M:D3G","C8991T,C10277T,C19317T,C25810T,A26530G","3CLpro:L75F,M:D3G",,,,0.0,0.0,0.0,0.0
XAU,Omicron,"nsp13:L391,S:Q957","T17407C,A24433G",,,,,0.0,0.0,0.0,0.0
XAV,Omicron,"nsp3:S1296F,RdRp:A840,nsp13:V348L,ORF7a:C15","C6606T,C15960T,G17278T,T27438C",,,,,0.0,0.0,0.0,0.0
XAY.1,,"nsp4:I289V,nsp16:P7,S:R21G,ORF7a:T61S","A9419G,G20679T,A21623G,C27575G",S:R21G,,,,,,,
XAY.1.1.2,,"nsp1:S40,nsp1:D48N,nsp3:Y1050,nsp3:K1290N,nsp4:T14I,nsp4:I289V,nsp8:Q24,nsp9:T21I,RdRp:I466,nsp16:P7,S:L18F,S:R21G,S:W152L,S:F186L,S:D253G,S:L452M,S:A706V,S:T1117I,ORF3a:I7,N:R149","A385G,G407A,C5869T,G6589C,C8595T,A9419G,G12163A,C12747T,C14838T,G20679T,C21614T,A21623G,G22017T,T22118C,A22320G,C22916A,C23679T,C24912T,C25413T,C28720T","S:L18F,S:T1117I,S:A706V,S:F186L,S:W152L,S:D253G,S:R21G",S:L452M,,,,,,
XAY.1.1.3,,"nsp3:F1107,S:F186L,S:A706V,S:T1117I,ORF7a:T61S,N:R149","C6040T,T22118C,C23679T,C24912T,C27575G,C28720T","S:T1117I,S:A706V,S:F186L",,,,,,,
XAY.2,,"nsp8:Q24,RdRp:A547","G12163A,C15081T",,,,,,,,
XAY.2.1,,"S:P1053,N:T24A","T24721C,A28343G",N:T24A,,,,,,,
XAY.2.2,,"nsp2:N267S,S:P1053","A1605G,T24721C",,,,,,,,
XAY.2.3,,"nsp1:A131V,nsp2:G535,nsp4:T14I,nsp4:I363T,RdRp:A547,S:F186L,S:G446D,S:A706V,S:T1117I","C657T,A2410G,C8595T,T9642C,C15081T,T22118C,G22899A,C23679T,C24912T","S:T1117I,S:A706V,S:F186L",S:G446D,,,,,,
XAZ,Omicron,"nsp3:P200S,nsp3:Y213","C3317T,T3358C",,,,,305.5,777.72,117.28,219.79
XBB.1.1,XBB.X,"nsp2:P129L,RdRp:N88","C1191T,T13704C",,,,,1243.9,852.4,0.0,0.0
XBB.1.10,XBB.X,"nsp6:L227,S:A852V","C11653T,C24117T",S:A852V,,,,0.0,0.0,0.0,0.0
XBB.1.11,XBB.X,"RdRp:A176,nsp13:P47","C13968A,G16377A",,,,,0.0,0.0,58.68,114.27
XBB.1.11.1,XBB.X,"RdRp:A176,nsp13:P47,S:V83A,ORF8:G8*","C13968A,G16377A,T21810C,G27915T",S:V83A,,,,0.0,0.0,0.0,0.0
XBB.1.12,XBB.X,"nsp2:S36F,RdRp:T259,RdRp:D260N","C912T,T14217A,G14218A",,,,,0.0,0.0,0.0,0.0
XBB.1.13.1,XBB.X,"nsp3:T1368A,S:N856K","A6821G,C24130G","S:N856K,nsp3:T1368A",,,,0.0,0.0,0.0,0.0
XBB.1.14,XBB.X,"nsp3:V932,RdRp:N790,S:G75V","G5515T,C15810T,G21786T",S:G75V,,,,0.0,0.0,0.0,0.0
XBB.1.15.1,XBB.X,"nsp4:L417,nsp14:T475","C9803T,A19464G",,,,,0.0,0.0,0.0,0.0
XBB.1.16,Omicron,"nsp9:A15,RdRp:V472,nsp14:D222Y,N:D371","T12730A,A14856G,G18703T,C29386T",,,,,16.98,36.72,16.24,33.87
XBB.1.16.1,Omicron,"nsp14:D222Y,S:T547I","G18703T,C23202T",S:T547I,,,,7.88,15.59,36.04,86.94
XBB.1.16.10,Omicron,"nsp9:A15,nsp14:D222Y,N:G25D","T12730A,G18703T,G28347A",N:G25D,,,,0.0,0.0,0.0,0.0
XBB.1.16.11,Omicron,"nsp9:A15,RdRp:V472,nsp14:D222Y,S:E180V,S:P521T,N:Q58,N:D371","T12730A,A14856G,G18703T,A22101T,C23123A,A28447G,C29386T","S:P521T,S:E180V",,,,12.33,24.88,23.24,51.06
XBB.1.16.13,Omicron,"nsp2:G339S,nsp3:G283D,RdRp:V472","G1820A,G3567A,A14856G",,,,,18.82,37.35,17.86,18.64
XBB.1.16.14,Omicron,"nsp9:A15,S:L452Q","T12730A,T22917A",,S:L452Q,,,16.66,34.79,0.0,0.0
XBB.1.16.15,Omicron,"3CLpro:A234,RdRp:N209","T10756C,T14067C",,,,,7.91,15.26,14.31,30.82
XBB.1.16.16,Omicron,"nsp3:S1699,nsp14:D222Y","T7816C,G18703T",,,,,45.42,85.0,0.0,0.0
XBB.1.16.19,Omicron,"nsp9:A15,RdRp:V848I,nsp14:D222Y,N:Q58","T12730A,G15982A,G18703T,A28447G",,,,,43.41,77.35,39.74,73.4
XBB.1.16.2,Omicron,"nsp3:P108H,ORF3a:V13L","C3042A,G25429C",,,,,31.91,75.58,22.04,42.16
XBB.1.16.21,Omicron,"nsp8:V130I,nsp14:D222Y","G12479A,G18703T",,,,,48.08,117.12,36.21,87.97
XBB.1.16.22,Omicron,"ORF3a:E242Q,N:Q58","G26116C,A28447G",ORF3a:E242Q,,,,0.0,0.0,0.0,0.0
XBB.1.16.23,Omicron,"nsp6:D159,nsp9:A15,RdRp:V472,nsp14:D222Y,S:E180V,S:K304Q,N:Q58,N:D371","T11449C,T12730A,A14856G,G18703T,A22101T,A22472C,A28447G,C29386T","S:E180V,S:K304Q",,,,38.5,73.13,0.0,0.0
XBB.1.16.24,Omicron,"nsp2:I479,S:V551I","T2242C,G23213A",S:V551I,,,,0.0,0.0,0.0,0.0
XBB.1.16.25,Omicron,"nsp2:K330E,N:G316","A1793G,A29221G",,,,,0.0,0.0,0.0,0.0
XBB.1.16.27,Omicron,"nsp8:A194,N:K237","T12673C,A28984G",,,,,0.0,0.0,0.0,0.0
XBB.1.16.28,Omicron,"nsp9:A15,RdRp:T26,nsp13:A338","T12730A,T13518C,T17250G",,,,,0.0,0.0,0.0,0.0
XBB.1.16.29,Omicron,"nsp3:N1454,S:N450,N:D371","C7081T,T22912C,C29386T",,,,,0.0,0.0,0.0,0.0
XBB.1.16.3,Omicron,"nsp3:A58,nsp14:D222Y","A2893C,G18703T",,,,,44.34,113.1,47.25,99.82
XBB.1.16.30,Omicron,"S:E554Q,ORF3a:L129","G23222C,T25779C",S:E554Q,,,,0.0,0.0,0.0,0.0
XBB.1.16.31,Omicron,"nsp4:C150,nsp14:D222Y","T9004C,G18703T",,,,,0.0,0.0,0.0,0.0
XBB.1.16.32,Omicron,"nsp3:P1787,nsp3:S1902","A8080G,A8425G",,,,,0.0,0.0,0.0,0.0
XBB.1.16.4,Omicron,"nsp14:D222Y,S:T678I,N:Q58","G18703T,C23595T,A28447G",S:T678I,,,,0.0,0.0,0.0,0.0
XBB.1.16.5,Omicron,"nsp4:S479,RdRp:V472,nsp13:D32","T9991C,A14856G,C16332T",,,,,50.16,88.23,0.0,0.0
XBB.1.16.6,Omicron,"nsp4:N131,3CLpro:K269,nsp8:A102,nsp14:D222Y","C8947T,A10861G,A12397G,G18703T",,,,,11.93,24.61,16.25,23.93
XBB.1.16.7,Omicron,"nsp8:S41,S:T732I","T12214C,C23757T",S:T732I,,,,0.0,0.0,0.0,0.0
XBB.1.16.8,Omicron,"nsp9:A15,RdRp:V472,nsp14:D222Y,S:E180V,S:T732I,N:Q58,N:Y86,N:D371","T12730A,A14856G,G18703T,A22101T,C23757T,A28447G,C28531T,C29386T","S:E180V,S:T732I",,,,30.67,69.33,0.0,0.0
XBB.1.16.9,Omicron,"nsp14:D222Y,S:F456L","G18703T,T22930G",,S:F456L,,,24.21,52.51,37.78,85.45
XBB.1.18.1,XBB.X,"nsp3:D1761G,nsp13:S36P","A8001G,T16342C",,,,,26.32,56.9,18.01,37.16
XBB.1.19,XBB.X,"nsp1:L92,nsp4:S496","C541T,A10042G,G29810T",,,,,22.85,43.61,17.29,35.81
XBB.1.21,XBB.X,"nsp3:K429R,nsp3:P1159","A4005G,C6196A",nsp3:K429R,,,,0.0,0.0,0.0,0.0
XBB.1.22.2,XBB.X,"nsp8:R75,RdRp:H599","A12316G,C15237T",,,,,54.08,95.81,0.0,0.0
XBB.1.22.3,XBB.X,"3CLpro:P241L,nsp14:H314N","C10776T,C18979A",3CLpro:P241L,,,,0.0,0.0,0.0,0.0
XBB.1.24.1,XBB.X,"nsp1:K120R,RdRp:N88,S:L518Q,ORF6:I32","A624G,T13704C,T23115A,C27297A",S:L518Q,,,,0.0,0.0,0.0,0.0
XBB.1.29,XBB.X,"nsp6:G48C,S:A292S","G11114T,G22436T",S:A292S,,,,0.0,0.0,0.0,0.0
XBB.1.30,XBB.X,"nsp6:L16,RdRp:N88,nsp16:K160R","C11020T,T13704C,A21137G",,,,,0.0,0.0,0.0,0.0
XBB.1.32,XBB.X,"nsp1:E148D,RdRp:N88","G709T,T13704C",,,,,0.0,0.0,0.0,0.0
XBB.1.33,XBB.X,"nsp13:L138I,nsp16:Y181","C16648A,T21201C",nsp13:L138I,,,,0.0,0.0,0.0,0.0
XBB.1.34,XBB.X,"nsp13:V169I,nsp14:L495,N:A50V","G16741A,C19524T,C28422T",N:A50V,,,,0.0,0.0,0.0,0.0
XBB.1.34.1,XBB.X,"nsp13:P47L,nsp13:V169I","C16376T,G16741A",,,,,0.0,0.0,0.0,0.0
XBB.1.34.2,XBB.X,"nsp3:G171C,nsp4:I292,nsp13:V169I,nsp14:F326,S:K182I,ORF8:C90F,N:A50V","G3230T,C9430T,G16741A,C19017T,A22107T,G28162T,C28422T","N:A50V,S:K182I",,,,0.0,0.0,0.0,0.0
XBB.1.35,XBB.X,"nsp1:V89A,RdRp:N88","T531C,T13704C",,,,,0.0,0.0,0.0,0.0
XBB.1.37.1,XBB.X,"nsp2:K347,nsp3:A884,nsp3:V1580,ORF6:N28","A1846G,A5371G,G7459T,T27285C",,,,,0.0,0.0,0.0,0.0
XBB.1.4.1,XBB.X,"nsp2:E453,S:S673G","G2164A,A23579G",S:S673G,,,,0.0,0.0,342.65,610.47
XBB.1.4.2,XBB.X,"nsp6:V26F,ORF3a:V256","G11048T,T26160C",,,,,0.0,0.0,0.0,0.0
XBB.1.41.2,XBB.X,"S:L335S,N:L121","T22566C,T28636C",,S:L335S,,,26.89,58.37,0.0,0.0
XBB.1.41.3,XBB.X,"S:L335S,N:A381","T22566C,C29416G",,S:L335S,,,0.0,0.0,0.0,0.0
XBB.1.42.2,XBB.X,"nsp3:F1107,nsp4:K165,S:Q613H","C6040T,G9049A,G23401T",S:Q613H,,,,47.05,87.69,2780.22,662.49
XBB.1.43.1,XBB.X,"nsp3:A1803V,nsp6:L33,nsp16:R19","C8127T,G11071A,A20713C",,,,,0.0,0.0,0.0,0.0
XBB.1.44,XBB.X,"nsp16:R216,S:G252V,S:T747I","C21306T,G22317T,C23802T","S:T747I,S:G252V",,,,0.0,0.0,0.0,0.0
XBB.1.45,XBB.X,"RdRp:D3,nsp16:D114","T13450C,T21000C",,,,,0.0,0.0,0.0,0.0
XBB.1.45.1,XBB.X,"nsp3:K140,nsp14:L366","A3139G,A19137G",,,,,0.0,0.0,0.0,0.0
XBB.1.5.100,Omicron,"nsp13:A296,S:V1122M","T17124C,G24926A",S:V1122M,,,,33.05,70.48,0.0,0.0
XBB.1.5.101,Omicron,"RdRp:Y479,nsp13:A296,ORF7b:E3Q","C14877T,T17124C,G27762C",,,,,0.0,0.0,0.0,0.0
XBB.1.5.103,Omicron,"nsp3:T619I,nsp16:N233,S:EGKQGN180D","C4575T,T21357C,AAGGAAAACAGGGTAA22101A",,,,,62.52,114.26,0.0,0.0
XBB.1.5.105,Omicron,"nsp3:S93F,nsp13:Y253H","C2997T,T16993C",,,,,0.0,0.0,0.0,0.0
XBB.1.5.106,Omicron,"3CLpro:R279H,S:A623V","G10890A,C23430T","3CLpro:R279H,S:A623V",,,,0.0,0.0,0.0,0.0
XBB.1.5.108,Omicron,"nsp14:A23S,nsp16:A4T","G18106T,G20668A",,,,,0.0,0.0,0.0,0.0
XBB.1.5.109,Omicron,"nsp2:T474A,nsp3:N931,nsp13:D401","A2225G,C5512T,C17439T,A29700G",,,,,0.0,0.0,0.0,0.0
XBB.1.5.11,Omicron,"nsp2:G221S,nsp13:A296","G1466A,T17124C",,,,,123.56,233.89,0.0,0.0
XBB.1.5.13,Omicron,"S:F106,ORF8:V62","T21880C,G28079T",,,,,25.66,26.94,16.86,34.74
XBB.1.5.14,Omicron,"nsp2:N630,nsp13:A296","C2695T,T17124C",,,,,68.22,163.27,69.95,142.23
XBB.1.5.15,Omicron,"3CLpro:L50,RdRp:G839","T10204C,G15957T",,,,,70.89,168.49,94.11,176.96
XBB.1.5.16,Omicron,"RdRp:F442,nsp13:A296","T14766C,T17124C",,,,,17.15,35.68,17.39,36.18
XBB.1.5.18,Omicron,"nsp3:T1482I,nsp13:A296","C7164T,T17124C",,,,,39.77,88.13,70.5,167.59
XBB.1.5.19,Omicron,"3CLpro:L50,RdRp:R181C","T10204C,C13981T",,,,,140.86,371.13,178.92,315.8
XBB.1.5.20,Omicron,"nsp4:F326,3CLpro:L50","C9532T,T10204C",,,,,78.94,190.77,131.77,233.2
XBB.1.5.21,Omicron,"nsp2:K142R,S:L461","A1230G,C22945T",,,,,297.29,483.61,284.11,421.92
XBB.1.5.22,Omicron,"nsp3:E680A,nsp14:V29","A4758C,T18126A",,,,,0.0,0.0,0.0,0.0
XBB.1.5.26,Omicron,"nsp2:L39,nsp13:S36P,nsp13:A296,S:G252V","C920T,T16342C,T17124C,G22317T",S:G252V,,,,45.38,87.69,107.52,189.61
XBB.1.5.27,Omicron,"nsp3:E197G,nsp6:Y153","A3309G,T11431C",,,,,92.58,216.8,0.0,0.0
XBB.1.5.29,Omicron,"nsp13:F546,S:A348V","C17874T,C22605T",,S:A348V,,,0.0,0.0,0.0,0.0
XBB.1.5.30,Omicron,"nsp13:A296,S:A348T","T17124C,G22604A",,S:A348T,,,11.92,24.22,0.0,0.0
XBB.1.5.31,Omicron,"nsp13:A296,S:Y1138","T17124C,T24976C",,,,,24.57,52.52,250.28,378.67
XBB.1.5.32,Omicron,"nsp4:T60I,3CLpro:L50","C8733T,T10204C",,,,,12.75,25.91,0.0,0.0
XBB.1.5.33,Omicron,"nsp1:V35,nsp13:A296","G370A,T17124C",,,,,13.46,27.55,121.12,298.9
XBB.1.5.34,Omicron,"nsp3:T936I,nsp4:A416","C5526T,G9802A",,,,,130.6,342.65,0.0,0.0
XBB.1.5.35,Omicron,"nsp13:A296,S:N978S","T17124C,A24495G",S:N978S,,,,82.66,156.37,0.0,0.0
XBB.1.5.37,Omicron,"3CLpro:L50,S:K1045R","T10204C,A24696G",S:K1045R,,,,49.66,95.64,10.19,20.49
XBB.1.5.38,Omicron,"nsp2:T223I,nsp13:A296,S:I666V","C1473T,T17124C,A23558G",S:I666V,,,,0.0,0.0,156.71,257.86
XBB.1.5.39,Omicron,"3CLpro:L50,nsp6:M115T","T10204C,T11316C",,,,,41.68,81.8,0.0,0.0
XBB.1.5.41,Omicron,"nsp4:C88,nsp4:I494,S:V772I","C8818T,C10036T,G23876A",S:V772I,,,,71.86,168.08,0.0,0.0
XBB.1.5.42,Omicron,"S:E281D,N:F274","A22405T,C29095T",S:E281D,,,,47.61,104.76,0.0,0.0
XBB.1.5.44,Omicron,"nsp13:D32,ORF3a:S92L","C16332T,C25667T",,,,,46.28,83.73,0.0,0.0
XBB.1.5.46,Omicron,"nsp3:H1017,3CLpro:L50,RdRp:H613","C5770T,T10204C,C15279T",,,,,0.0,0.0,73.93,174.82
XBB.1.5.49,Omicron,"nsp3:G1389,3CLpro:L50","T6886C,T10204C",,,,,60.64,140.77,92.0,221.93
XBB.1.5.5,Omicron,"nsp3:S1428L,S:K1181I","C7002T,A25104T",S:K1181I,,,,77.19,181.36,97.18,233.33
XBB.1.5.50,Omicron,"N:T49I,N:L224","C28419T,T28945C",N:T49I,,,,205.34,337.84,0.0,0.0
XBB.1.5.51,Omicron,"nsp4:D246A,ORF3a:A54V","A9291C,C25553T",,,,,120.02,220.2,0.0,0.0
XBB.1.5.52,Omicron,"nsp3:H290,nsp13:A296","C3589T,T17124C",,,,,87.42,211.87,92.5,222.54
XBB.1.5.54,Omicron,"RdRp:C306,nsp13:A296,N:F346","C14358T,T17124C,C29311T",,,,,0.0,0.0,0.0,0.0
XBB.1.5.56,Omicron,"3CLpro:L50,S:A852S","T10204C,G24116T",S:A852S,,,,124.96,236.43,0.0,0.0
XBB.1.5.6,Omicron,"3CLpro:L50,S:V952I","T10204C,G24416A",S:V952I,,,,0.0,0.0,0.0,0.0
XBB.1.5.60,Omicron,"3CLpro:L50,S:M177I","T10204C,G22093T",S:M177I,,,,0.0,0.0,214.78,1046.0
XBB.1.5.61,Omicron,"3CLpro:L50,nsp6:G188","T10204C,T11536C",,,,,150.08,272.52,0.0,0.0
XBB.1.5.64,Omicron,"nsp3:V1806,nsp13:A296","G8137A,T17124C",,,,,0.0,0.0,0.0,0.0
XBB.1.5.65,Omicron,"nsp1:V106,3CLpro:L50","C583T,T10204C",,,,,0.0,0.0,23.67,48.16
XBB.1.5.68,Omicron,"nsp14:Y154,S:P521T,ORF3a:L71I","C18501T,C23123A,C25603A",S:P521T,,,,25.08,52.29,0.0,0.0
XBB.1.5.69,Omicron,"nsp4:V180I,S:N317","G9092A,C22513T",,,,,114.59,211.45,0.0,0.0
XBB.1.5.7,Omicron,"RdRp:V257F,nsp13:A296","G14209T,T17124C",,,,,72.6,175.01,73.03,173.5
XBB.1.5.71,Omicron,"S:F43,S:V511I","C21691T,G23093A",S:V511I,,,,0.0,0.0,57.5,125.58
XBB.1.5.72,Omicron,"nsp4:N423,ORF3a:V112","T9823C,C25728T",,,,,21.15,43.74,0.0,0.0
XBB.1.5.73,Omicron,"nsp13:S36P,nsp13:A296","T16342C,T17124C,A28271C",,,,,8.63,17.25,0.0,0.0
XBB.1.5.76,Omicron,"3CLpro:L50,nsp6:T127A","T10204C,A11351G",,,,,0.0,0.0,0.0,0.0
XBB.1.5.77,Omicron,"3CLpro:L50,nsp14:I231","T10204C,T18732C",,,,,32.64,71.11,81.85,268.0
XBB.1.5.78,Omicron,"nsp2:N280D,3CLpro:L50,nsp13:A296","A1643G,T10204C,T17124C",,,,,101.77,232.09,0.0,0.0
XBB.1.5.79,Omicron,"nsp13:A296,N:Q260L","T17124C,A29052T",N:Q260L,,,,149.4,374.8,0.0,0.0
XBB.1.5.8,Omicron,"3CLpro:L50,nsp13:A296,S:D936,N:R10Q","T10204C,T17124C,C24370T,G28302A",N:R10Q,,,,0.0,0.0,0.0,0.0
XBB.1.5.80,Omicron,"nsp13:K192,S:L84","A16812G,C21812T",,,,,158.96,403.43,0.0,0.0
XBB.1.5.86,Omicron,"nsp4:G105S,nsp13:A296","G8867A,T17124C",nsp4:G105S,,,,67.84,125.98,0.0,0.0
XBB.1.5.89,Omicron,"nsp4:L106F,3CLpro:L50,S:E554A","G8872T,T10204C,A23223C","nsp4:L106F,S:E554A",,,,0.0,0.0,0.0,0.0
XBB.1.5.9,Omicron,"3CLpro:L50,N:S327L","T10204C,C29253T",,,,,107.48,266.11,0.0,0.0
XBB.1.5.90,Omicron,"3CLpro:D187,S:C1254","C10615T,C25324T",,,,,0.0,0.0,0.0,0.0
XBB.1.5.93,Omicron,"nsp1:R24,nsp13:A296,nsp14:L383","C337T,T17124C,C19186T",,,,,0.0,0.0,0.0,0.0
XBB.1.5.94,Omicron,"3CLpro:L50,S:Q613H,ORF3a:A23","T10204C,G23401T,T25461C",S:Q613H,,,,0.0,0.0,0.0,0.0
XBB.1.5.95,Omicron,"nsp3:A1033V,nsp13:A296","C5817T,T17124C",,,,,55.58,126.45,157.22,255.87
XBB.1.5.97,Omicron,"nsp3:N1705,S:T941S","C7834T,A24383T",S:T941S,,,,0.0,0.0,169.42,277.31
XBB.1.5.98,Omicron,"nsp14:H373,ORF8:V32L","T19158C,G27987T",,,,,0.0,0.0,0.0,0.0
XBB.1.5.99,Omicron,"nsp3:V304A,nsp3:T1303I,nsp13:A296","T3630C,C6627T,T17124C",,,,,0.0,0.0,0.0,0.0
XBB.1.6,XBB.X,"nsp3:C55F,nsp3:H1702Q","G2883T,T7825A",,,,,0.0,0.0,0.0,0.0
XBB.1.7,XBB.X,"nsp3:K233N,S:V608I","G3418T,G23384A",S:V608I,,,,0.0,0.0,0.0,0.0
XBB.1.8,XBB.X,"nsp3:D174,S:K187NGGR","C3241T,AG22121AGCGGCGGGAG",S:K187NGGR,,,,35.78,76.42,27.73,59.03
XBB.1.9.1,Omicron,"nsp3:G1001S,nsp7:D38,N:N8","G5720A,C11956T,T28297C",,,,,18.01,37.15,32.27,66.0
XBB.1.9.5,XBB.X,"nsp2:D449E,nsp3:G1001S","T2152G,G5720A",,,,,0.0,0.0,0.0,0.0
XBB.2.1,XBB.X,"nsp3:K839,S:N764S,ORF3a:D155Y","A5236G,A23853G,G25855T",S:N764S,,,,0.0,0.0,0.0,0.0
XBB.2.10,XBB.X,"S:T323,ORF3a:D155Y,N:N213","A22531G,G25855T,T28912C",,,,,0.0,0.0,0.0,0.0
XBB.2.11.1,XBB.X,"nsp13:N95,nsp14:D30","T16521C,C18129T",,,,,205.44,402.16,0.0,0.0
XBB.2.2,XBB.X,"S:L84,S:Q613H,ORF3a:D155Y","C21812T,G23401T,G25855T",S:Q613H,,,,0.0,0.0,0.0,0.0
XBB.2.3,XBB.2.3.X,"nsp3:D505,ORF7a:A13V","C4234T,C27431T",,,,,18.25,37.65,22.08,43.01
XBB.2.3.1,XBB.2.3.X,"RdRp:A250T,S:D80Y","G14188A,G21800T",S:D80Y,,,,0.0,0.0,99.58,330.72
XBB.2.3.15,XBB.2.3.X,"nsp3:D505,nsp3:G1273S,GFL:I55V,ORF7a:A13V","C4234T,G6536A,A13187G,C27431T",,,,,40.69,95.03,0.0,0.0
XBB.2.3.16,XBB.2.3.X,"nsp3:G1849,S:T478","C8266T,A22996C",,,,,0.0,0.0,0.0,0.0
XBB.2.3.17,XBB.2.3.X,"nsp3:G1849,nsp13:D580,ORF3a:V256","C8266T,C17976T,GTTGTT26155GTT",,,,,0.0,0.0,0.0,0.0
XBB.2.3.19,XBB.2.3.X,"nsp3:P968L,S:G184V","C5622T,G22113T",S:G184V,,,,27.95,56.54,44.52,89.78
XBB.2.3.2,XBB.2.3.X,"nsp3:D505,nsp3:R1341W","C4234T,C6740T",,,,,8.9,17.68,61.42,104.73
XBB.2.3.20,XBB.2.3.X,"S:IN210N,N:A267S","TATTA22189TA,G29072T",N:A267S,,,,46.99,100.72,41.76,88.21
XBB.2.3.21,XBB.2.3.X,"nsp2:G438,RdRp:R173","C2119T,C13959T",,,,,0.0,0.0,0.0,0.0
XBB.2.3.3,XBB.2.3.X,"nsp3:D505,S:K182N","C4234T,A22108T",S:K182N,,,,21.09,42.94,24.08,45.58
XBB.2.3.4,XBB.2.3.X,"S:T478P,ORF7a:A13V","A22994C,C27431T",,S:T478P,,,0.0,0.0,0.0,0.0
XBB.2.3.5,XBB.2.3.X,"nsp14:L177,S:T478","C18570T,A22996T",,,,,0.0,0.0,0.0,0.0
XBB.2.3.6,XBB.2.3.X,"nsp3:D505,nsp3:G1273S,S:D427,S:P521S,ORF7a:A13V,N:T166I","C4234T,G6536A,T22843C,C23123T,C27431T,C28770T,G29706T","S:P521S,N:T166I",,,,0.0,0.0,0.0,0.0
XBB.2.3.8,XBB.2.3.X,"nsp2:A403V,nsp13:N51","C2013T,T16389C",,,,,37.2,74.52,0.0,0.0
XBB.2.3.9,XBB.2.3.X,"nsp14:C387,S:S98F","C19200T,C21855T",S:S98F,,,,0.0,0.0,0.0,0.0
XBB.2.6,XBB.X,nsp3:T1004,T5731A,,,,,19.89,41.79,24.36,52.23
XBB.2.6.2,XBB.X,"nsp3:T1004,S:T19P","T5731A,A21617C",S:T19P,,,,0.0,0.0,0.0,0.0
XBB.3,XBB.X,"nsp1:G82D,nsp14:I474V","G510A,A19459G",,,,,253.27,532.05,33.05,73.39
XBB.3.1,XBB.X,"nsp2:Y396,S:Q677R","T1993C,A23592G",S:Q677R,,,,0.0,0.0,0.0,0.0
XBB.3.2,XBB.X,"nsp1:G82D,ORF8:S54L","G510A,C28054T",ORF8:S54L,,,,799.91,1519.77,0.0,0.0
XBB.3.3,XBB.X,"nsp2:Y396,RdRp:A529T","T1993C,G15025A",,,,,0.0,0.0,0.0,0.0
XBB.3.4,XBB.X,"nsp14:I474V,S:E990D","A19459G,A24532C",S:E990D,,,,0.0,0.0,0.0,0.0
XBB.4,XBB.X,"nsp1:G82D,nsp13:S36P,S:K444R","G510A,T16342C,A22893G",,S:K444R,,,0.0,0.0,0.0,0.0
XBB.6.1,XBB.X,"RdRp:T246,RdRp:L308,ORF3a:G49","C14178T,C14362T,C25539T",,,,,25.82,54.93,0.0,0.0
XBB.8,XBB.X,"nsp1:G82D,RdRp:P378","G510A,T14574C",,,,,0.0,0.0,0.0,0.0
XBB.8.1,XBB.X,"nsp3:Q1906,RdRp:P378","A8437G,T14574C",,,,,0.0,0.0,0.0,0.0
XBB.9,XBB.X,"nsp1:G82D,N:T49I","G510A,C28419T",N:T49I,,,,0.0,0.0,0.0,0.0
XBC.1,,"nsp4:T173,nsp6:V149A,RdRp:Y530,RdRp:H599,nsp13:T127I,S:P25S,S:P209L,S:L212S,S:L452M,ORF3a:Y154,M:S99,ORF8:K2T","C9073T,T11418C,T15030C,C15237T,C16616T,C21635T,C22188T,T22197C,C22916A,C25854T,T26819C,G27890T,A27898C","S:P25S,S:P209L,S:L212S",S:L452M,,,,,,
XBC.1.2.1,,"nsp6:D99,ORF3a:Y154","T11269C,C25854T",,,,,,,,
XBC.1.3,,"nsp3:T725I,nsp3:P1159,nsp3:V1458I,nsp4:T173,RdRp:Y530,RdRp:H599,nsp13:T127I,S:P25S,S:P209L,S:L212S,S:D215H,ORF3a:S74,ORF3a:Y154,M:S99,ORF8:K2T","C4893T,C6196T,G7091A,C9073T,T15030C,C15237T,C16616T,C21635T,C22188T,T22197C,G22205C,C25614T,C25854T,T26819C,G27890T,A27898C","S:P25S,S:P209L,S:D215H,S:L212S",,,,,,,
XBC.1.3.1,,"nsp3:V1243A,RdRp:S768N","T6447C,G15743A",,,,,,,,
XBC.1.6,,"nsp3:C296F,nsp13:T250,nsp13:I333V,S:A989,N:S176","G3606T,T16986C,A17233G,T24529C,C28801T",nsp13:I333V,,,,,,,
XBD,Omicron,"nsp3:L825,nsp8:N118S,S:A1020S,N:G19","C5192T,A12444G,G24620T,A28330G",S:A1020S,,,,0.0,0.0,0.0,0.0
XBE,Omicron,"nsp13:T127N,ORF7b:A15","C16616A,C27800T",,,,,209.01,772.35,0.0,0.0
XBF,Omicron,nsp3:V207A,T3339C,,,,,27.09,57.69,13.21,26.57
XBF.1.1,Omicron,"nsp3:G337C,S:P809","G3728T,A23989G",,,,,0.0,0.0,0.0,0.0
XBF.2,Omicron,"nsp1:K120N,nsp3:V207A,nsp3:I1117,nsp4:Y46,nsp14:V182I,ORF8:V62A","G625T,T3339C,C6070T,C8692T,G18583A,T28078C",ORF8:V62A,,,,0.0,0.0,0.0,0.0
XBF.3,Omicron,"nsp3:G116,nsp3:V207A,nsp3:I1117","T3067C,T3339C,C6070T",,,,,0.0,0.0,237.8,581.89
XBF.4,Omicron,"nsp1:K120N,nsp3:V207A,nsp3:Y511","G625T,T3339C,C4252T",,,,,0.0,0.0,269.79,443.33
XBF.5,Omicron,"nsp1:K120N,nsp2:L550,nsp3:V207A,nsp3:I1117","G625T,C2455T,T3339C,C6070T",,,,,0.0,0.0,0.0,0.0
XBF.6,Omicron,"nsp1:K120N,nsp3:V207A,nsp3:I1117,nsp8:V44A,nsp14:V182I","G625T,T3339C,C6070T,T12222C,G18583A",,,,,0.0,0.0,0.0,0.0
XBF.7.1,Omicron,"nsp3:V207A,N:T379I","T3339C,C29409T",N:T379I,,,,0.0,0.0,0.0,0.0
XBF.9,Omicron,"nsp13:S80G,N:A254","A16474G,T29035G",,,,,0.0,0.0,0.0,0.0
XBG,Omicron,"nsp6:L231,S:K1038","C11665T,A24676G",,,,,0.0,0.0,0.0,0.0
XBH,Omicron,"nsp3:V1603,RdRp:A97V,S:K147E,S:W152R,S:F157L,S:I210V,S:G257S,S:D1199N,E:T11A","C7528T,C13730T,A22001G,T22016C,C22033A,A22190G,G22331A,G25157A,A26275G","S:D1199N,S:I210V,S:G257S,S:F157L,S:W152R,S:K147E,E:T11A",,,,0.0,0.0,0.0,0.0
XBJ,Omicron,"nsp3:C118Y,ORF3a:V168","G3072A,C25896T",,,,,0.0,0.0,0.0,0.0
XBJ.2,Omicron,"nsp3:C118Y,S:N148,ORF3a:V168","G3072A,C22006T,C25896T",,,,,0.0,0.0,0.0,0.0
XBJ.3,Omicron,"nsp3:C118Y,GFL:L133,ORF3a:V168","G3072A,C13423T,C25896T",,,,,0.0,0.0,0.0,0.0
XBK,Omicron,"nsp8:D161,nsp14:V182I","T12574C,G18583A",,,,,0.0,0.0,91.71,184.21
XBK.1,Omicron,"nsp8:D161,S:P1162S","T12574C,C25046T",S:P1162S,,,,0.0,0.0,104.37,256.32
XBL,,"nsp3:A243T,nsp3:V359,nsp3:S403L,nsp3:P822S,nsp15:G253,S:G252V,N:P13","G3446A,C3796T,C3927T,C5183T,A20379G,G22317T,C28312T",S:G252V,,,,,,,
XBL.1,,"nsp2:P552,S:V635I","T2461C,G23465A",S:V635I,,,,,,,
XBL.2,,"nsp2:S196,nsp3:A243T","A1393G,G3446A",,,,,,,,
XBL.3,,"nsp3:A243T,RdRp:V320,nsp15:G253","G3446A,G14400T,A20379G",,,,,,,,
XBM,Omicron,"nsp15:K64,S:T547I","A19812G,C23202T",S:T547I,,,,0.0,0.0,0.0,0.0
XBN,,"nsp14:I474V,nsp14:G505","A19459G,C19554T",,,,,,,,
XBP,Omicron,"nsp9:Y89,S:D737","C12952T,T23773C",,,,,0.0,0.0,0.0,0.0
XBQ,Omicron,"nsp8:N118S,RdRp:M463I,nsp14:V182I,S:I210V","A12444G,G14829T,G18583A,A22190G",S:I210V,,,,0.0,0.0,0.0,0.0
XBR,Omicron,"nsp2:I387V,nsp3:K1042R,ORF3a:Q213","A1964G,A5844G,G26031A",,,,,0.0,0.0,0.0,0.0
XBS,Omicron,"nsp3:A41,nsp3:C1421,nsp16:Y30","C2842T,C6982T,T20748C",,,,,0.0,0.0,0.0,0.0
XBT,Omicron,"nsp2:N8,nsp3:D163G,nsp3:E523,S:Q675","C829T,A3207G,G4288A,G23587A",,,,,0.0,0.0,209.2,596.98
XBV,,"nsp3:D1774G,RdRp:G839,S:E554G,S:I870V","A8040G,G15957T,A23223G,A24170G","S:I870V,nsp3:D1774G,S:E554G",,,,,,,
XBW,,"S:V350,N:T329","T22612C,G29260A",,,,,,,,
XBZ,Omicron,"nsp3:F1107,S:C432,S:Y508,E:V62F","C6040T,C22858T,C23086T,G26428T",,,,,0.0,0.0,760.48,3246.05
XCA,Omicron,"nsp3:T1010N,nsp6:A51V","C5748A,C11124T",,,,,0.0,0.0,0.0,0.0
XCE,,"RdRp:N790,nsp14:D258N","C15810T,G18811A",,,,,,,,
XCF,,"nsp3:K429,nsp13:Y277,ORF3a:F207C","G4006A,T17067C,T26012G",,,,,,,,
XCF.1,,"nsp3:K429,ORF7b:H42","G4006A,C27881T",,,,,,,,
XCF.3,,"nsp13:Y277,S:R78M,ORF3a:F207C","T17067C,G21795T,T26012G",S:R78M,,,,,,,
XCG,,"nsp2:L274,nsp3:S1817,ORF7a:G42","C1627T,A8170G,C27519T",,,,,,,,
XCH,,"nsp13:D207G,ORF3a:Q185H","A16856G,G25947C","ORF3a:Q185H,nsp13:D207G",,,,,,,
XCH.1,,"nsp13:D207G,S:T573I","A16856G,C23280T","S:T573I,nsp13:D207G",,,,,,,
XCK,,"nsp2:Y441,nsp3:N931,M:V143","T2128C,C5512T,G26951C",,,,,,,,
XCL,,"nsp3:Y1566,RdRp:S772C,S:P1162S","C7417T,C15755G,C25046T",S:P1162S,,,,,,,
XCM,,"RdRp:D40,ORF10:M1V","T13560C,A29558G",,,,,,,,
XCP,,"nsp3:G301,N:D3","C3622T,T28282C",,,,,,,,
XCQ,,"nsp3:D505,nsp3:G1273S,S:L276,S:T732I","C4234T,G6536A,C22388T,C23757T",S:T732I,,,,,,,
XCR,,"S:T573I,M:L62","C23280T,A26708G",S:T573I,,,,,,,
XCT,,"nsp3:Y1444,S:Y837","C7051T,T24073C",,,,,,,,
XCT.1,,"nsp2:I293,nsp3:Y1444,ORF3a:A72T","C1684T,C7051T,G25606A",,,,,,,,
XCU,,"nsp15:R90,N:A35T","A19890G,G28376A",N:A35T,,,,,,,
XCV,,"nsp3:N901,nsp3:P1442H,S:C336,M:L181,N:Q58,N:D371","T5422C,C7044A,C22570T,G27065A,A28447G,C29386T",,,,,,,,
XCW,,"RdRp:Y289H,nsp14:V199","T14305C,G18636A",,,,,,,,
XCZ,,"nsp3:H1274,RdRp:D63N,RdRp:M666V,S:S349,S:N354,S:T573I,S:S704L","C6541T,G13627A,A15436G,T22609G,C22624T,C23280T,C23673T","RdRp:D63N,S:T573I,S:S704L",,,,,,,
XD,,"RdRp:P323S,RdRp:D608","C14407T,T15264C,G29540A",,,,,,,,
XDA,,"nsp4:F118,RdRp:T85A,nsp14:D222Y,S:K182Q,S:A701V,N:F66","T8908C,A13693G,G18703T,A22106C,C23664T,C28471T","S:K182Q,S:A701V",,,,,,,
XDA.1,,"nsp13:Y476,ORF8:C20Y","T17664C,G27952A",ORF8:C20Y,,,,,,,
XDD,,"nsp2:A510V,nsp3:G1001S,nsp3:H1274,nsp9:L44,ORF7a:G38,ORF10:S23F","C2334T,G5720A,C6541T,C12815T,A27507C,C29625T",,,,,,,,
XDD.1.1,,"nsp3:H1274,S:I584V,S:S704L","C6541T,A23312G,C23673T","S:I584V,S:S704L",,,,,,,
XDD.2,,"nsp2:A510V,nsp3:G1001S,nsp3:H1274,nsp14:C285,S:T307I,S:L455S,ORF10:S23F","C2334T,G5720A,C6541T,C18894T,C22482T,T22926C,C29625T",S:T307I,S:L455S,,,,,,
XDE,,"nsp2:S122F,nsp3:P1261Q,nsp4:S496,nsp8:L128,nsp9:P80L,nsp16:N235,S:L455F,S:T478I","C1170T,C6501A,A10042G,C12473T,C12924T,T21363C,G22927T,C22995T,C29535T",,"S:L455F,S:T478I",,,,,,
XDG,,"nsp3:N737,nsp13:D223","T4930C,T16905C",,,,,,,,
XDK,,"nsp3:L865,nsp4:G196","C5314T,C9142T",,,,,,,,
XDK.1.2,,"nsp3:L865,nsp4:G196,nsp6:Q208,S:T572I","C5314T,C9142T,G11596A,C23277T",S:T572I,,,,,,,
XDK.2,,"nsp6:L67,S:N679S,ORF7a:I88V","C11173T,A23598G,A27655G",S:N679S,,,,,,,
XDK.3,,"nsp3:L865,nsp4:G196,3CLpro:F134L,S:R21T,S:T572I","C5314T,C9142T,C10456A,G21624C,C23277T","S:T572I,3CLpro:F134L,S:R21T",,,,,,,
XDK.4.1,,"nsp3:L865,ORF3a:H78","C5314T,C25626T",,,,,,,,
XDK.5,,"nsp3:L865,nsp4:G196,S:L276","C5314T,C9142T,C22388T",,,,,,,,
XDK.6,,"nsp2:K276,nsp3:L865,nsp4:G196","A1633G,C5314T,C9142T,C29762T",,,,,,,,
XDL,,"RdRp:I847,nsp13:P82,nsp13:D580,ORF8:F120L","C15981T,A16482C,C17976T,C28253A",,,,,,,,
XDM,,"RdRp:T85A,S:K182Q,S:L828,N:F66","A13693G,A22106C,T24046C,C28471T",S:K182Q,,,,,,,
XDN,,"nsp1:V5,RdRp:L329","C280T,C14425T",,,,,,,,
XDP,,"nsp1:T170I,nsp14:A138,N:R191","C774T,T18453C,C28846T",,,,,,,,
XDP.1,,"S:E1092D,N:R191","A24838T,C28846T",S:E1092D,,,,,,,
XDP.3,,"nsp1:T170I,nsp14:A138,S:S255F,N:R191","C774T,T18453C,C22326T,C28846T",S:S255F,,,,,,,
XDQ,,"ORF8:Q29,N:R191,N:S250","A27980G,C28846T,T29023C",,,,,,,,
XDQ.1,,"S:A475V,ORF8:Q29,N:R191","C22986T,A27980G,C28846T",,S:A475V,,,,,,
XDS,,"nsp13:K467,S:F456V,N:T379I","A17637G,T22928G,C29409T",N:T379I,S:F456V,,,,,,
XDT,,"nsp3:A645,M:L164","T4654C,G27014A",,,,,,,,
XDV,,"nsp2:S122F,nsp3:P1261Q,nsp3:T1465I,nsp4:S496,nsp8:L128,nsp9:P80L,M:T30A","C1170T,C6501A,C7113T,A10042G,C12473T,C12924T,A26610G",,,,,,,,
XDV.1,,"nsp2:S122F,nsp3:P1261Q,nsp3:T1465I,nsp4:S496,nsp8:L128,nsp9:P80L,S:F456L","C1170T,C6501A,C7113T,A10042G,C12473T,C12924T,T22930A",,S:F456L,,,,,,
XDV.1.1,,"nsp3:L620,nsp3:P1261Q,nsp8:L128,nsp9:P80L","T4579A,C6501A,C12473T,C12924T",,,,,,,,
XDV.1.11,,"nsp3:H446,nsp9:P80L","T4057C,C12924T",,,,,,,,
XDV.1.5,,"nsp3:A655V,nsp3:N1860,nsp13:C29","C4683T,C8299T,C16323T",,,,,,,,
XDV.1.7,,"nsp3:P1261Q,nsp4:I132,nsp4:D217N","C6501A,C8950T,G9203A",,,,,,,,
XDV.1.8,,"nsp3:P1261Q,nsp4:A446,nsp4:S496,nsp8:L128,nsp9:P80L","C6501A,T9892G,A10042G,C12473T,C12924T",,,,,,,,
XDY,Omicron,"nsp15:G17R,S:Q183H,S:R190T,S:Q493E","G19669A,G22111T,G22131C,C23039G","S:Q183H,S:R190T",S:Q493E,,,4.37,5.21,0.0,0.0
XE,Omicron,"nsp3:D174,nsp3:V1069I,RdRp:L387","C3241T,G5924A,C14599T",,,,,2782.88,2372.11,292.62,742.11
XEC,XEC.X,"nsp14:T206,nsp15:Y32","C18657T,C19716T",,,,,3.11,6.18,1.58,2.21
XEC.1,XEC.X,"nsp2:A419T,nsp9:L42F","G2060A,C12809T",,,,,0.0,0.0,0.0,0.0
XED,Omicron,"nsp4:I292,GFL:K95R,nsp14:A138,S:P1263L","C9430T,A13308G,T18453C,C25350T",S:P1263L,,,,0.0,0.0,0.0,0.0
XEF,Omicron,"nsp3:P512,S:L335S","G4255T,T22566C",,S:L335S,,,0.0,0.0,0.0,0.0
XF,,"nsp2:N195,nsp2:I484V","T1390C,A2255G",,,,,,,,
XG,Omicron,"nsp3:K38R,nsp3:A889,nsp3:P985S,nsp3:V1069I,nsp15:I79V,S:I410","A2832G,T5386G,C5672T,G5924A,A19855G,C22792T",,,,,0.0,0.0,905.7,1298.57
XH,Omicron,nsp2:C33*,C904A,,,,,0.0,0.0,51.42,107.63
XL,Omicron,"nsp2:L24F,nsp3:D174,nsp3:V1069I,RdRp:K263","C875T,C3241T,G5924A,G14229A",,,,,0.0,0.0,0.0,0.0
XN,Omicron,"nsp3:K38R,nsp6:R5K","A2832G,G10986A",,,,,0.0,0.0,328.56,811.93
XP,Omicron,"nsp2:A555,S:R346K,S:S371P,S:G496S,S:N856K,S:A876,S:L981F,M:L120I,ORF8:I121","C2470T,G22599A,T22673C,G23048A,C24130A,A24190C,C24503T,C26880A,CA28253C","S:L981F,S:N856K","S:R346K,S:S371P,S:G496S",,,0.0,0.0,0.0,0.0
XQ,Omicron,"nsp2:A555,nsp3:K38R,nsp4:L438F,nsp13:K460R,S:V213G,S:Q493R,ORF6:D61V","C2470T,A2832G,C9866T,A17615G,T22200G,A23040G,A27383T",S:V213G,S:Q493R,,,0.0,0.0,0.0,0.0
XR,Omicron,"GFL:D91N,ORF3a:G44","G13295A,A25524G",,,,,0.0,0.0,131529.0,517255.88
XS,,"nsp3:Y882,nsp3:P1159,S:V11","C5365T,C6196T,C21595T",,,,,,,,
XV,Omicron,"nsp3:K38R,nsp3:S288,nsp3:A889,nsp3:SL1265I,nsp3:A1892T,nsp6:LSGF105F,nsp6:I189V,GFL:V57,S:V213G,S:I410,S:Q493R","A2832G,C3583T,T5386G,AGTT6512A,G8393A,GTTTGTCTGGTTT11283GTTT,A11537G,T13195C,T22200G,C22792T,A23040G",S:V213G,S:Q493R,,,0.0,0.0,0.0,0.0
XW,Omicron,"nsp9:T24I,RdRp:V860","C12756T,G16020T",,,,,0.0,0.0,0.0,0.0
XY,Omicron,"nsp2:G260,nsp6:V26A,nsp7:T81","A1585G,T11049C,C12085T",,,,,0.0,0.0,0.0,0.0
XZ,Omicron,"nsp15:E260K,S:I410,M:D3G","G20398A,C22792T,A26530G",M:D3G,,,,0.0,0.0,0.0,0.0
Y.1,,"nsp3:M768I,nsp4:F478","G5023T,C9988T",nsp3:M768I,,,,,,,
Z.1,,"nsp8:P10S,ORF3a:L85F","C12119T,G25647C",,,,,,,,