Genome

Eubacteriales Clostridiales overview Lineage: Bacteria[37515]; Bacillota[6135]; Clostridia[2689]; Eubacteriales[1428]

Strain Clostridiales TSDC10.2-2.1 was isolated from the fecal microbiota of a USA female at day 42 (bacterial isolates were sequenced from this donor on day 0 and 42). The species name was assigned as the most abundant genus/species associated with a given cluster of genomes (with a cluster containing all strains with a coverage score >0.50). The More...genome was sequenced with paired-end 101bp reads on an Illumina HiSeq 2000. Genome length is 3164952. Coverage is 217.8x. N50 contig size is 427089. Less...

Summary Sequence data:  genome assemblies: 570; sequence reads: 698  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2.17491  median protein count: 2126  median GC%: 58.1 Publications (limited to 20 most recent records) MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy. Rocha U, et al. Mol Ecol Resour 2024 Feb Metagenomes and metagenome-assembled genomes from ex vivo fecal incubations of six unique donors. Narrowe AB, et al. Microbiol Resour Announc 2024 Feb 15 Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices. Huang KD, et al. Cell Rep Med 2024 Mar 19 Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs. Fernandes-Martins MC, et al. Environ Microbiol 2023 May Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa. Magnúsdóttir S, et al. Front Microbiol 2023 A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources. Ma B, et al. Nat Commun 2023 Nov 11 The Parkinson's drug entacapone disrupts gut microbiome homeostasis via iron sequestration. Pereira FC, et al. bioRxiv 2023 Nov 13 The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping. Beresford-Jones BS, et al. Cell Host Microbe 2022 Jan 12 Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates. Gharechahi J, et al. NPJ Biofilms Microbiomes 2022 Jun 8 An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea. Buessecker S, et al. Nat Commun 2022 Jun 30 Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome. Ravi A, et al. Commun Biol 2022 Sep 8 Metagenomic analysis reveals a dynamic microbiome with diversified adaptive functions to utilize high lignocellulosic forages in the cattle rumen. Gharechahi J, et al. ISME J 2021 Apr Metagenome-Assembled Genome Sequences from Different Wastewater Treatment Stages in Germany. Schneider D, et al. Microbiol Resour Announc 2021 Jul 8 Effects of laboratory domestication on the rodent gut microbiome. Bowerman KL, et al. ISME Commun 2021 Sep 17 MGnify: the microbiome analysis resource in 2020. Mitchell AL, et al. Nucleic Acids Res 2020 Jan 8 New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters. Campanaro S, et al. Biotechnol Biofuels 2020 An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome. Lesker TR, et al. Cell Rep 2020 Mar 3 Complete Genome Sequence of Escherichia coli GW-AmxH19, Isolated from Hospital Wastewater in Greifswald, Germany. Schneider D, et al. Microbiol Resour Announc 2020 May 21 Links between environment, diet, and the hunter-gatherer microbiome. Fragiadakis GK, et al. Gut Microbes 2019 Gut microbiome transition across a lifestyle gradient in Himalaya. Jha AR, et al. PLoS Biol 2018 Nov More...