Gossypium raimondii (ID 3239) - Genome

Gossypium raimondii (Peruvian cotton)
Representative genome: Gossypium raimondii (assembly ASM2569854v1)
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ID: 3239

Organism Overview ; Genome Assembly and Annotation report [5] ; Organelle Annotation Report [2]

Gossypium raimondii (Peruvian cotton)

Gossypium raimondii Organism overview

Lineage: Eukaryota[15557]; Viridiplantae[1758]; Streptophyta[1641]; Embryophyta[1630]; Tracheophyta[1603]; Spermatophyta[1585]; Magnoliopsida[1558]; eudicotyledons[1256]; Gunneridae[1256]; Pentapetalae[1256]; rosids[782]; malvids[313]; Malvales[54]; Malvaceae[49]; Malvoideae[37]; Gossypium[29]; Gossypium raimondii[1]

Gossypium ramondii is the wild diploid Peruvian cotton species the closest extant representative of the Dt subgenome of the domesticated allotetraploids G. hirsutum L. (Upland Cotton) and G. barbadense L. (Pima Cotton).

Summary

Sequence data:

genome assemblies: 5; sequence reads: 3

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 751.042

median protein count: 51885

median GC%: 33.5229

NCBI Annotation Release:

101

Publications (limited to 20 most recent records)

Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. Wang M, et al. Nat Genet 2022 Dec
Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing. Grover CE, et al. Genome Biol Evol 2019 Jan 1
De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri. Udall JA, et al. G3 (Bethesda) 2019 Oct 7
Entire nucleotide sequences of Gossypium raimondii and G. arboreum mitochondrial genomes revealed A-genome species as cytoplasmic donor of the allotetraploid species. Chen Z, et al. Plant Biol (Stuttg) 2017 May
Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: origin and evolution of allotetraploids. Xu Q, et al. PLoS One 2012
The draft genome of a diploid cotton Gossypium raimondii. Wang K, et al. Nat Genet 2012 Oct
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Paterson AH, et al. Nature 2012 Dec 20

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Representative (genome information for reference and representative genomes)

Reference genome:

Gossypium raimondii ASM2569854v1

Submitter: Huazhong Agricultural University

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	1	-	CM046969.1	52.42	33.2	-	-	-	-	-	-

Chr	2	-	CM046970.1	48.27	33.3	-	-	-	-	-	-

Chr	3	-	CM046971.1	63.02	33.3	-	-	-	-	-	-

Chr	4	-	CM046972.1	50.65	33.2	-	-	-	-	-	-

Chr	5	-	CM046973.1	57.14	33.1	-	-	-	-	-	-

Chr	6	-	CM046974.1	60.4	33.2	-	-	-	-	-	-

Chr	7	-	CM046975.1	53.5	33.1	-	-	-	-	-	-

Chr	8	-	CM046976.1	62.61	33.1	-	-	-	-	-	-

Chr	9	-	CM046977.1	49.93	33.1	-	-	-	-	-	-

Chr	10	-	CM046978.1	61.94	33.1	-	-	-	-	-	-

Chr	11	-	CM046979.1	63.19	33.1	-	-	-	-	-	-

Chr	12	-	CM046980.1	57.72	33.3	-	-	-	-	-	-

Chr	13	-	CM046981.1	58.75	33.2	-	-	-	-	-	-

	-	NC_016668.1	-	0.16	37.3	83	8	37	-	128	-

	-	NC_029998.1	-	0.68	44.9	39	6	30	-	76	1

Un	-	.	-	10.68	37.2	-	-	-	-	-	-

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