Genome

Ochotona princeps (American pika) The American pika, Ochotona princeps Lineage: Eukaryota[15558]; Metazoa[7784]; Chordata[3583]; Craniata[3548]; Vertebrata[3548]; Euteleostomi[3503]; Mammalia[873]; Eutheria[699]; Euarchontoglires[338]; Glires[143]; Lagomorpha[9]; Ochotonidae[2]; Ochotona[2]; Ochotona princeps[1]

The American pika, Ochotona princeps, is a small mouse-like mammal that is actually related to rabbits and other lagomorphs. It lives at high altitudes amid the rocky talus slopes of the mountains of western North America. The genome of the American pika is organized in 33 autosomes and a pair of sex chromosomes.

Summary Sequence data:  genome assemblies: 5  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2534.78  median protein count: 29688  median GC%: 44 NCBI Annotation Release:  103 Publications (limited to 20 most recent records) Towards complete and error-free genome assemblies of all vertebrate species. Rhie A, et al. Nature 2021 Apr  Representative (genome information for reference and representative genomes) Reference genome:   Ochotona princeps mOchPri1.hap1 Submitter: Vertebrate Genomes Project Loc Type Name RefSeq INSDC Size (Mb) GC% master WGS - JAUDYK000000000.1 2,555.46 44.2 Chr 1 - CM059647.1 172.48 43.5 Chr 2 - CM059648.1 166.92 45.5 Chr 3 - CM059649.1 121.99 41.4 Chr 4 - CM059650.1 113.9 43.9 Chr 5 - CM059651.1 108.36 41.6 Chr 6 - CM059652.1 88.55 43.9 Chr 7 - CM059653.1 87.49 40.7 Chr 8 - CM059654.1 83.05 43.3 Chr 9 - CM059655.1 81.55 41.5 Chr 10 - CM059656.1 78.43 43.1 Chr 11 - CM059657.1 73.96 41.9 Chr 12 - CM059658.1 71.25 41.1 Chr 13 - CM059659.1 69.3 44.6 Chr 14 - CM059660.1 65.34 43.9 Chr 15 - CM059661.1 58.49 44.4 Chr 16 - CM059662.1 58.27 48.1 Chr 17 - CM059663.1 55.63 48.3 Chr 18 - CM059664.1 53.3 42.6 Chr 19 - CM059665.1 51.04 44.6 Chr 20 - CM059666.1 43.45 43.5 Chr 21 - CM059667.1 42.98 46.3 Chr 22 - CM059668.1 40.58 47.3 Chr 23 - CM059669.1 39.25 42.1 Chr 24 - CM059670.1 38.05 48.6 Chr 25 - CM059671.1 34.23 43.3 Chr 26 - CM059672.1 32.46 46.1 Chr 27 - CM059673.1 28.02 45.0 Chr 28 - CM059674.1 26.23 42.9 Chr 29 - CM059675.1 25.45 49.9 Chr 30 - CM059676.1 22.2 44.2 Chr 31 - CM059677.1 16.86 45.3 Chr 32 - CM059678.1 15.67 44.5 Chr 33 - CM059679.1 8.12 58.2 Chr X - CM059680.1 107.8 40.8 Chr Y - CM059681.1 34.42 42.1 MT - CM059820.1 0.02 42.8 Chromosomes Click on chromosome name to open Genome Data Viewer External Resources Animal Diversity Web Broad Institute