Genome

Bubalus bubalis (water buffalo) water buffalo Lineage: Eukaryota[15558]; Metazoa[7784]; Chordata[3583]; Craniata[3548]; Vertebrata[3548]; Euteleostomi[3503]; Mammalia[873]; Eutheria[699]; Laurasiatheria[340]; Artiodactyla[152]; Ruminantia[102]; Pecora[100]; Bovidae[72]; Bovinae[24]; Bubalus[3]; Bubalus bubalis[1]

The water buffalo Bubalus babalis is a domesticated animal that is agriculturally important as a source of meat and milk. Populations are widespread; the river buffalo variety is found in western Indochina, the Mediterranean, and South and Central America, while the swamp buffalo variety is found in eastern Indochina, southeast Asia, and Australia. More...Water buffalo provide more than 5% of the world's milk supply, and their milk is higher in protein, fat and lactose than cow's milk. Buffalo are also sources of meat and leather, and also serve as draft animals.The genome is organized in five pairs of metacentric chromosomes, 19 pairs of acrocentric chromosomes, and two sex chromosomes, X and Y. Less...

Summary Sequence data:  genome assemblies: 8; sequence reads: 6  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2770.26  median protein count: 64378  median GC%: 41.814 NCBI Annotation Release:  103 Publications (limited to 20 most recent records) Draft genome of the river water buffalo. Mintoo AA, et al. Ecol Evol 2019 Mar De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One 2016  Representative (genome information for reference and representative genomes) Reference genome:   Bubalus bubalis NDDB_SH_1 Submitter: National Dairy Development Board, India Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene master WGS - VDCB00000000.1 2,622.46 41.7 - - - - - - Chr 1 NC_059157.1 CM034271.1 202.35 40.4 3,368 6 143 932 1,986 205 Chr 2 NC_059158.1 CM034272.1 188.16 41.4 4,730 - 298 1,181 2,760 256 Chr 3 NC_059159.1 CM034273.1 174.87 42.8 5,617 1 161 1,361 3,089 235 Chr 4 NC_059160.1 CM034274.1 164.97 41.8 4,467 4 128 965 2,505 345 Chr 5 NC_059161.1 CM034275.1 132.5 43.1 3,761 2 101 824 2,083 227 Chr 6 NC_059162.1 CM034276.1 120.42 41.8 3,646 - 245 787 2,126 216 Chr 7 NC_059163.1 CM034277.1 117 39.8 1,931 - 70 576 1,043 146 Chr 8 NC_059164.1 CM034278.1 119.32 40.5 2,101 - 85 600 1,351 109 Chr 9 NC_059165.1 CM034279.1 110.26 41.8 3,572 3 83 715 2,008 216 Chr 10 NC_059166.1 CM034280.1 104.55 39.9 1,508 - 60 443 938 130 Chr 11 NC_059167.1 CM034281.1 102.42 41.4 2,556 - 90 790 1,697 141 Chr 12 NC_059168.1 CM034282.1 106.39 42.8 2,958 - 91 698 1,523 113 Chr 13 NC_059169.1 CM034283.1 89.36 40.3 1,237 - 58 480 695 62 Chr 14 NC_059170.1 CM034284.1 83.48 43.6 2,309 - 74 686 1,293 102 Chr 15 NC_059171.1 CM034285.1 81.83 41.2 1,424 - 58 524 856 71 Chr 16 NC_059172.1 CM034286.1 85.12 41.6 2,427 - 65 395 1,702 312 Chr 17 NC_059173.1 CM034287.1 72.6 42.2 1,902 - 83 429 994 91 Chr 18 NC_059174.1 CM034288.1 65.79 45.3 3,431 - 85 764 1,874 152 Chr 19 NC_059175.1 CM034289.1 71.58 40.9 833 - 43 288 591 65 Chr 20 NC_059176.1 CM034290.1 69.61 43.0 1,556 1 47 563 1,019 106 Chr 21 NC_059177.1 CM034291.1 60.62 43.4 1,967 - 46 471 852 56 Chr 22 NC_059178.1 CM034292.1 61.77 41.7 1,043 - 42 360 600 53 Chr 23 NC_059179.1 CM034293.1 52.1 42.7 1,383 - 41 370 712 62 Chr 24 NC_059180.1 CM034294.1 42.17 47.0 2,018 - 90 354 1,048 50 Chr X NC_059181.1 CM034295.1 143.19 40.5 2,620 - 155 614 1,784 298 MT NC_049568.1 CM034296.1 0.02 40.5 13 2 22 - 38 - Chromosomes Click on chromosome name to open Genome Data Viewer External Resources Breeds of Livestock - Other Species Buffmap Database OMIA - Online Mendelian Inheritance in Animals