Klebsiella variicola (ID 2121) - Genome - NCBI

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Klebsiella variicola
Representative genome: Klebsiella variicola
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ID: 2121

Organism Overview ; Genome Assembly and Annotation report [879] ; Genome Tree report [525] ; Plasmid Annotation Report [225]

Klebsiella variicola

Plant associated bacterium

Lineage: Bacteria[37515]; Pseudomonadota[11108]; Gammaproteobacteria[4595]; Enterobacterales[798]; Enterobacteriaceae[395]; Klebsiella/Raoultella group[20]; Klebsiella[16]; Klebsiella variicola[2]

Klebsiella variicola. Klebsiella variicola is closely related to the human pathogen Klebsiella pneumoniae. This organism has been isolated from plants (such as banana, rice, sugar cane and maize) as well as clinical samples.

Summary

Sequence data:

genome assemblies: 879; sequence reads: 4

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 5.68002

median protein count: 5305

median GC%: 57.2

Publications (limited to 20 most recent records)

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy. Rocha U, et al. Mol Ecol Resour 2024 Feb
Clinical, microbiological and genomic characterization of Gram-negative bacteria with dual carbapenemases as identified by rapid molecular testing. Mushtaq A, et al. JAC Antimicrob Resist 2024 Feb
In-patient evolution of a high-persister Escherichia coli strain with reduced in vivo antibiotic susceptibility. Parsons JB, et al. Proc Natl Acad Sci U S A 2024 Jan 16
Genomic and epidemiological insight of an outbreak of carbapenemase-producing Enterobacterales in a Portuguese hospital with the emergence of the new KPC-124. Manageiro V, et al. J Infect Public Health 2024 Mar
Molecular identification and whole genome sequence analyses of methicillin-resistant and mastitis-associated Staphylococcus aureus sequence types 6 and 2454 isolated from dairy cows. Rahman MH, et al. J Genomics 2024
Draft genome sequences of Bacillus licheniformis strains MEZBL63 and MEZBL64 harboring the lichenysin toxin operon isolated from livestock in South Africa. El Zowalaty ME, et al. Microbiol Resour Announc 2024 Mar 12
Molecular epidemiology and clinical impact of Klebsiella spp. causing bloodstream infections in Hong Kong. Yang X, et al. EBioMedicine 2024 Mar
Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices. Huang KD, et al. Cell Rep Med 2024 Mar 19
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Du J, et al. Genome Biol 2024 Mar 21
Draft genome sequences of clinical mastitis-associated Enterococcus faecalis and Enterococcus faecium carrying multiple antimicrobial resistance genes isolated from dairy cows. Rahman MH, et al. J Glob Antimicrob Resist 2024 May 23
Clinical and Molecular Analyses of Recurrent Gram-Negative Bloodstream Infections. Bock A, et al. Clin Infect Dis 2023 Feb 8
Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa. Magnúsdóttir S, et al. Front Microbiol 2023
Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees. Sarton-Lohéac G, et al. mBio 2023 Apr 25
Draft genome sequences of rare Lelliottia nimipressuralis strain MEZLN61 and two Enterobacter kobei strains MEZEK193 and MEZEK194 carrying mobile colistin resistance gene mcr-9 isolated from wastewater in South Africa. El Zowalaty ME, et al. J Glob Antimicrob Resist 2023 Jun
Molecular characteristics of clinical IMP-producing Klebsiella pneumoniae isolates: novel IMP-90 and integron In2147. Yang L, et al. Ann Clin Microbiol Antimicrob 2023 May 15
Draft Genome Sequences of Two Clinical Mastitis-Associated Escherichia coli Strains, of Sequence Type 101 and Novel Sequence Type 13054, Isolated from Dairy Cows in Bangladesh. Rahman MH, et al. Microbiol Resour Announc 2023 Aug 22
Genomic dissection of endemic carbapenem resistance reveals metallo-beta-lactamase dissemination through clonal, plasmid and integron transfer. Macesic N, et al. Nat Commun 2023 Aug 8
Characterization of Carbapenemase- and ESBL-Producing Gram-Negative Bacilli Isolated from Patients with Urinary Tract and Bloodstream Infections. Tickler IA, et al. Antibiotics (Basel) 2023 Aug 30
Antimicrobial Resistance and Virulence Characteristics of Klebsiella pneumoniae Isolates in Kenya by Whole-Genome Sequencing. Muraya A, et al. Pathogens 2022 May 5
Draft genome sequence of Cronobacter sakazakii strain MEZCS99 sequence type 3 isolated from chicken in South Africa. El Zowalaty ME, et al. J Glob Antimicrob Resist 2022 Dec

Representative (genome information for reference and representative genomes)

Reference genome:

Klebsiella variicola ASM964897v1

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	-	NZ_CP045783.1	CP045783.1	5.54	57.5	5,140	25	86	13	5,345	81

Dendrogram (based on genomic BLAST)

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