U.S. flag

An official website of the United States government

Coffea canephora
Representative genome: Coffea canephora (assembly AUK_PRJEB4211_v1)
Download sequences in FASTA format for genome, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Coffea canephora genome, protein

Display Settings:

Format

Send to:

Choose Destination
ID: 12248
Organism ImageCoffea canephora

Coffea canephora Organism overview

Lineage: Eukaryota[14874]; Viridiplantae[1623]; Streptophyta[1510]; Embryophyta[1501]; Tracheophyta[1480]; Spermatophyta[1463]; Magnoliopsida[1437]; eudicotyledons[1157]; Gunneridae[1157]; Pentapetalae[1157]; asterids[364]; lamiids[229]; Gentianales[31]; Rubiaceae[19]; Ixoroideae[5]; Gardenieae complex[5]; Bertiereae - Coffeeae clade[4]; Coffeeae[4]; Coffea[4]; Coffea canephora[1]
Coffee is one of the most-consumed beverages of the world. Coffea canephora, also known as robusta coffee, is one of the two most commonly grown coffee beans that is grown for use in coffee; the other is Coffea arabica. Coffea canephora grows indigenously in western and central Africa. Relative to Coffea arabica, the robusta More...

Summary

Submitter: Genoscope CEA
Assembly level: Chromosome
Assembly: GCA_900059795.1 AUK_PRJEB4211_v1 scaffolds: 13,345 contigs: 25,544 N50: 49,589 L50: 2,408
BioProjects: PRJEB4211
Whole Genome Shotgun (WGS): INSDC: CBUE000000000.2
Statistics: total length (Mb): 568.612
 protein count: 25574
 GC%: 38.8866

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein Gene
ChrI-HG974428.138.1938.82,1982,198
ChrII-HG974437.127.6238.01,6531,653
ChrIII-HG974438.133.5438.21,7531,753
ChrIV-HG974429.154.5237.94,0004,000
ChrV-HG974430.132.0338.51,6321,632
ChrVI-HG974431.128.1938.31,7271,727
ChrVII-HG974432.129.1438.41,6611,661
ChrVIII-HG974433.137.2938.22,3892,389
ChrIX-HG974434.129.8338.42,1462,146
ChrX-HG974435.131.5938.51,7181,718
ChrXI-HG974436.122.3538.71,0941,094
Un-.-204.339.93,6033,603

Supplemental Content

Tools

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center