Solanum arcanum (ID 31602) - Genome - NCBI

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Solanum arcanum
Representative genome: Solanum arcanum (assembly ASM2778914v1)
BLAST against Solanum arcanum genome, protein
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ID: 31602

Organism Overview ; Genome Assembly and Annotation report [2]

Solanum arcanum

Solanum arcanum overview

Lineage: Eukaryota[13881]; Viridiplantae[1512]; Streptophyta[1403]; Embryophyta[1394]; Tracheophyta[1376]; Spermatophyta[1359]; Magnoliopsida[1334]; eudicotyledons[1078]; Gunneridae[1078]; Pentapetalae[1078]; asterids[330]; lamiids[214]; Solanales[85]; Solanaceae[76]; Solanoideae[61]; Solaneae[53]; Solanum[52]; Solanum subgen. Lycopersicon[12]; Solanum arcanum[1]

Solanum arcanum is a nightshade native to Peru.

Summary

Sequence data:

genome assemblies: 2; sequence reads: 1

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 763.127

median protein count: 0

median GC%: 34.1203

Publications (limited to 20 most recent records)

Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. 100 Tomato Genome Sequencing Consortium., et al. Plant J 2014 Oct

Representative (genome information for reference and representative genomes)

Reference genome:

Solanum arcanum ASM2778914v1

Submitter: Chinese Academy of Agricultural Sciences

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%
		master WGS	-	JAPXVU000000000.1	861.07	34.7

	Chr	1	-	CM050933.1	106.94	34.3

	Chr	2	-	CM050934.1	60.19	34.3

	Chr	3	-	CM050935.1	71.72	34.8

	Chr	4	-	CM050936.1	68.26	34.2

	Chr	5	-	CM050937.1	69.59	34.4

	Chr	6	-	CM050938.1	55.1	35.0

	Chr	7	-	CM050939.1	73.62	35.2

	Chr	8	-	CM050940.1	64.85	34.5

	Chr	9	-	CM050941.1	79.56	34.7

	Chr	10	-	CM050942.1	69.01	34.3

	Chr	11	-	CM050943.1	63.98	34.7

	Chr	12	-	CM050944.1	72.93	35.4

Chromosomes

External Resources

The 150 tomato genomes sequencing project

Supplemental Content

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BLAST Genome
BLAST Genome

Related information

Assembly
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BioProject
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Components
Constituent nucleotide sequence
PubMed
PubMed articles cited by genome record
Taxonomy
Taxonomy sequences associated with genome record

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