Anas platyrhynchos (ID 2793) - Genome

Anas platyrhynchos (mallard)
Representative genome: Anas platyrhynchos (assembly ZJU1.0)
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ID: 2793

Organism Overview ; Genome Assembly and Annotation report [16] ; Organelle Annotation Report [3]

Anas platyrhynchos (mallard)

The mallard is a globally distributed duck that breeds in fresh water

Lineage: Eukaryota[15557]; Metazoa[7782]; Chordata[3579]; Craniata[3544]; Vertebrata[3544]; Euteleostomi[3500]; Archelosauria[1076]; Archosauria[1039]; Dinosauria[1034]; Saurischia[1034]; Theropoda[1034]; Coelurosauria[1034]; Aves[1034]; Neognathae[1009]; Galloanserae[81]; Anseriformes[46]; Anatidae[44]; Anatinae[28]; Anas[7]; Anas platyrhynchos[1]

Summary

Sequence data:

genome assemblies: 16; sequence reads: 11

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 1148.04

median protein count: 30935

median GC%: 41.8

NCBI Annotation Release:

104

Publications (limited to 20 most recent records)

A new chromosome-scale duck genome shows a major histocompatibility complex with several expanded multigene families. Hu J, et al. BMC Biol 2024 Feb 5
Identification of alternative splicing events related to fatty liver formation in duck using full-length transcripts. Wang Y, et al. BMC Genomics 2023 Mar 1
Chromosomal-level reference genome of a wild North American mallard (Anas platyrhynchos). Lavretsky P, et al. G3 (Bethesda) 2023 Sep 30
Evolution, Inheritance, and Strata Formation of the W Chromosome in Duck (Anas platyrhynchos). Gu H, et al. Genome Biol Evol 2023 Nov 1
Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication. Zhu F, et al. Nat Commun 2021 Oct 11
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Huang Y, et al. Nat Genet 2013 Jul

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Representative (genome information for reference and representative genomes)

Reference genome:

Anas platyrhynchos ZJU1.0

Submitter: Zhejiang University

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	1	NC_051772.1	CM027243.1	207.24	40.0	6,035	-	52	2,101	3,409	34

Chr	2	NC_051773.1	CM027244.1	164.86	39.9	4,129	-	56	1,502	2,507	26

Chr	3	NC_051774.1	CM027245.1	120.09	40.1	3,560	-	33	1,502	2,027	10

Chr	4	NC_051775.1	CM027246.1	76.27	39.6	2,435	-	5	1,044	1,326	8

Chr	5	NC_051776.1	CM027247.1	66.86	41.5	3,037	-	14	951	1,499	8

Chr	6	NC_051777.1	CM027248.1	37.94	41.7	1,735	-	1	556	791	3

Chr	7	NC_051778.1	CM027249.1	39.9	41.2	1,692	-	44	550	812	3

Chr	8	NC_051779.1	CM027250.1	32.62	42.1	1,548	1	2	492	745	-

Chr	9	NC_051780.1	CM027251.1	26.79	42.9	1,364	29	3	510	700	1

Chr	10	NC_051781.1	CM027252.1	22.48	43.2	1,140	-	2	434	593	2

Chr	11	NC_051782.1	CM027253.1	22.6	43.4	1,193	-	48	373	660	1

Chr	12	NC_051783.1	CM027254.1	21.61	42.3	836	-	14	292	514	1

Chr	13	NC_051784.1	CM027255.1	23.15	43.5	1,061	-	1	431	575	2

Chr	14	NC_051785.1	CM027256.1	20.98	45.0	872	-	1	256	514	4

Chr	15	NC_051786.1	CM027257.1	17.87	44.7	1,077	-	5	225	539	-

Chr	16	NC_051787.1	CM027258.1	16.22	45.8	1,055	-	6	209	519	2

Chr	17	NC_051788.1	CM027259.1	1.4	52.7	316	-	30	36	172	11

Chr	18	NC_051789.1	CM027260.1	12.07	48.4	870	-	2	196	402	-

Chr	19	NC_051790.1	CM027261.1	13.13	46.9	787	-	11	254	438	3

Chr	20	NC_051791.1	CM027262.1	11.97	46.8	803	-	3	244	437	1

Chr	21	NC_051792.1	CM027263.1	16.96	45.8	944	-	4	261	534	-

Chr	22	NC_051793.1	CM027264.1	8.4	47.7	639	-	-	144	339	-

Chr	23	NC_051794.1	CM027265.1	5.33	47.5	432	-	1	85	215	2

Chr	24	NC_051795.1	CM027266.1	7.64	50.5	533	-	-	152	329	-

Chr	25	NC_051796.1	CM027267.1	7.66	49.0	481	-	1	138	266	-

Chr	26	NC_051797.1	CM027268.1	3.04	55.5	523	-	2	33	285	4

Chr	27	NC_051798.1	CM027269.1	6.8	51.9	694	-	4	142	364	-

Chr	28	NC_051799.1	CM027270.1	7.03	50.6	638	-	20	130	454	15

Chr	29	NC_051800.1	CM027271.1	6.03	52.3	661	-	4	71	346	1

Chr	31	NC_051801.1	CM027273.1	0.21	63.5	36	-	-	1	23	-

Chr	W	NC_051803.1	CM027275.1	16.69	45.6	361	2	1	132	172	11

Chr	33	NC_051802.1	CM027274.1	0.11	65.2	26	-	-	1	22	-

Chr	Z	NC_051804.1	CM027272.1	84.55	40.1	2,180	-	7	598	1,141	6

	MT	NC_009684.1	-	0.02	48.6	13	2	22	-	37	-

Un	-	.	-	62.03	52.9	1,519	3	2	548	1,411	84

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