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    met5 DNA methyl transferase5 [ Zea mays ]

    Gene ID: 542060, updated on 14-Dec-2023

    Summary

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    Gene symbol
    met5
    Gene description
    DNA methyl transferase5
    Locus tag
    ZEAMMB73_Zm00001d002330
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    DNA; et5; Zmet5; DMT105; GRMZM2G005310
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (10736667..10746180)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (10460803..10470316)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyrate transaminase 1, mitochondrial Neighboring gene probable inactive purple acid phosphatase 16 Neighboring gene uncharacterized LOC100272346 Neighboring gene uncharacterized LOC100194355 Neighboring gene uncharacterized LOC103645946

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic perturbation of the maize methylome. Li Q, et al. Plant Cell, 2014 Dec. PMID 25527708, Free PMC Article
    2. Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. Papa CM, et al. Plant Cell, 2001 Aug. PMID 11487702, Free PMC Article
    3. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    4. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    5. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • PZA00024_Zea_mays_ssp._parviglumis_JSG_197 (e-PCR)

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA (cytosine-5)-methyltransferase 3
    Names
    DNA (cytosine-5)-methyltransferase 2
    DNA cytosine methyltransferase MET5
    DNA methyltransferase 105
    chromomethylase 2
    chromomethylase 3
    zea methyltransferase5
    NP_001105167.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111697.2 → NP_001105167.2  DNA (cytosine-5)-methyltransferase 3

      Status: VALIDATED

      Source sequence(s)
      AY093416, BT068150
      UniProtKB/Swiss-Prot
      Q8LPU5, Q9ARI6
      UniProtKB/TrEMBL
      A0A1R3MZG1
      Conserved Domains (3) summary
      COG0270
      Location:346 → 876
      Dcm; Site-specific DNA-cytosine methylase [Replication, recombination and repair]
      cd00024
      Location:443 → 499
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd04716
      Location:187 → 314
      BAH_plantDCM_I; BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects ...

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      10736667..10746180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001279862.1: Suppressed sequence

      Description
      NM_001279862.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPU5.1 GenPept UniProtKB/Swiss-Prot:Q8LPU5
    Q9ARI6.1 GenPept UniProtKB/Swiss-Prot:Q9ARI6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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