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    sox3 SRY-box transcription factor 3 [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115552886, updated on 17-Mar-2024

    Summary

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    Gene symbol
    sox3
    Gene description
    SRY-box transcription factor 3
    See related
    Ensembl:ENSGMOG00000020190
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    zebrafish all
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    Genomic context

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    See sox3 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 10 NC_044057.1 (19849085..19851094, complement)

    Chromosome 10 - NC_044057.1Genomic Context describing neighboring genes Neighboring gene MCF.2 cell line derived transforming sequence a Neighboring gene ATPase phospholipid transporting 11C Neighboring gene inositol polyphosphate phosphatase-like 1b Neighboring gene pyrimidinergic receptor P2Y4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044057.1 Chromosome 10 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Sox-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044057.1 Reference gadMor3.0 Primary Assembly

      Range
      19849085..19851094 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030369253.1 → XP_030225113.1  transcription factor Sox-3

      UniProtKB/TrEMBL
      A0A8C4ZUP1
      Related
      ENSGMOP00000021677.1, ENSGMOT00000022195.2
      Conserved Domains (2) summary
      cd01388
      Location:33 → 104
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam12336
      Location:103 → 182
      SOXp; SOX transcription factor
    Nucleotide Protein
    Heading Accession and Version

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