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    Pdzk1ip1 PDZK1 interacting protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 81916, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Pdzk1ip1provided by RGD
    Official Full Name
    PDZK1 interacting protein 1provided by RGD
    Primary source
    RGD:620952
    See related
    EnsemblRapid:ENSRNOG00000008161 AllianceGenome:RGD:620952
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Dd96; Map17
    Summary
    Predicted to be located in membrane. Orthologous to human PDZK1IP1 (PDZK1 interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 1154.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pdzk1ip1 in Genome Data Viewer
    Location:
    5q35
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (133841586..133859894)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (128618050..128623131)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (133895849..133900720)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene STIL, centriolar assembly protein Neighboring gene TAL bHLH transcription factor 1, erythroid differentiation factor Neighboring gene uncharacterized LOC120102952 Neighboring gene transfer RNA proline (anticodon AGG) 66 Neighboring gene cytochrome P450, family 4, subfamily x, polypeptide 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Rat kidney MAP17 induces cotransport of Na-mannose and Na-glucose in Xenopus laevis oocytes. Blasco T, et al. Am J Physiol Renal Physiol, 2003 Oct. PMID 12812916
    2. Rapid isolation of tissue-specific genes from rat kidney. Hu E, et al. Exp Nephrol, 2001 Mar-Apr. PMID 11150865
    3. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
    4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PDZK1-interacting protein 1
    Names
    17 kDa membrane-associated protein
    membrane-associated protein 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_130401.1 → NP_569085.1  PDZK1-interacting protein 1

      See identical proteins and their annotated locations for NP_569085.1

      Status: PROVISIONAL

      Source sequence(s)
      AF402772
      UniProtKB/Swiss-Prot
      Q923S2
      UniProtKB/TrEMBL
      A6JZ32
      Conserved Domains (1) summary
      pfam15807
      Location:15 → 114
      MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      133841586..133859894
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110842.2 → XP_038966770.2  PDZK1-interacting protein 1 isoform X1

      Related
      ENSRNOP00000011434.3, ENSRNOT00000011434.5

    2. XM_039110844.1 → XP_038966772.1  PDZK1-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A6JZ34
      Conserved Domains (1) summary
      pfam15807
      Location:1 → 84
      MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q923S2.1 GenPept UniProtKB/Swiss-Prot:Q923S2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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