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    snail zinc-finger transcription factor Snail [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 378469, updated on 14-Dec-2023

    Summary

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    Gene symbol
    snail
    Gene description
    zinc-finger transcription factor Snail
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (27041281..27045120, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578434.1 (1722..4890, complement)

    NW_022145614.1Genomic Context describing neighboring genes Neighboring gene chloride channel protein C Neighboring gene DNA translocase FtsK-like Neighboring gene protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) Neighboring gene retinoblastoma-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc-finger transcription factor Snail

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214660.1 → NP_999825.1  zinc-finger transcription factor Snail

      See identical proteins and their annotated locations for NP_999825.1

      Status: PROVISIONAL

      Source sequence(s)
      AY372519
      UniProtKB/TrEMBL
      Q6UCK0
      Conserved Domains (3) summary
      sd00017
      Location:258 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:201 → 221
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:271 → 294
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

      Range
      27041281..27045120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials