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    pmel premelanosome protein [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 447954, updated on 5-Mar-2024

    Summary

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    Official Symbol
    pmelprovided by Xenbase
    Official Full Name
    premelanosome proteinprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-6454505
    See related
    Ensembl:ENSXETG00000009439
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    sil; me20; silv; gp100; pmel-a; pmel-b; pmel17; silver
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (137895290..137906752)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (134631765..134643376)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene RAB5B, member RAS oncogene family Neighboring gene cyclin-dependent kinase 2 Neighboring gene diacylglycerol kinase alpha Neighboring gene poly(A) specific ribonuclease subunit PAN2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    melanocyte protein PMEL
    Names
    silver homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      137895290..137906752
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002934515.5 → XP_002934561.3  melanocyte protein PMEL isoform X1

      UniProtKB/TrEMBL
      F7EQI0, K9J808
      Related
      ENSXETP00000020810.5, ENSXETT00000020810.5
      Conserved Domains (3) summary
      PRK10811
      Location:400 → 562
      rne; ribonuclease E; Reviewed
      PRK11907
      Location:330 → 457
      PRK11907; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
      cd00146
      Location:276 → 334
      PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...

    2. XM_031897164.1 → XP_031753024.1  melanocyte protein PMEL isoform X2

      UniProtKB/TrEMBL
      A0A8J1J575, F7EQI0
      Conserved Domains (3) summary
      PRK10811
      Location:400 → 556
      rne; ribonuclease E; Reviewed
      PRK11907
      Location:330 → 457
      PRK11907; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
      cd00146
      Location:276 → 334
      PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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