U.S. flag

An official website of the United States government

  • Create RSS
  • Save search
  • Advanced
  • Help
Format

Send to:

Choose Destination
    • Showing Current items.

    bix1.2.S Brachyury-inducible homeobox 1, gene 2 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 373603, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    bix1.2.S
    Official Full Name
    Brachyury-inducible homeobox 1, gene 2 S homeolog
    Primary source
    Xenbase:XB-GENE-6252895
    Locus tag
    XELAEV_18028630mg
    See related
    EnsemblRapid:ENSXLAG00005003454
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    bix2; milk; bix2-A; bix2.L
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5S
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (12086886..12089755, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (12111821..12114526, complement)

    Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene Mix paired homeobox S homeolog Neighboring gene Brachyury-inducible homeobox 1, gene 1 S homeolog Neighboring gene Brachyury-inducible homeobox 1, gene 3 S homeolog Neighboring gene acyl-CoA binding domain containing 3 S homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A novel Xenopus mix-like gene milk involved in the control of the endomesodermal fates. Ecochard V, et al. Development, 1998 Jul. PMID 9636073
    2. Bix1, a direct target of Xenopus T-box genes, causes formation of ventral mesoderm and endoderm. Tada M, et al. Development, 1998 Oct. PMID 9735361

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within endoderm development IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within endoderm formation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within hematopoietic progenitor cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Brachyury-inducible homeobox 1, gene 2 S homeolog; brachyury-inducible homeobox 1, gene 2 S homeolog
    Names
    homeobox protein BIX2 L homeolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085602.1 → NP_001079071.1  Brachyury-inducible homeobox 1, gene 2 S homeolog

      See identical proteins and their annotated locations for NP_001079071.1

      Status: PROVISIONAL

      Source sequence(s)
      AF079560
      UniProtKB/TrEMBL
      O57407, O93534
      Conserved Domains (1) summary
      pfam00046
      Location:86 → 139
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      12086886..12089755 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018264215.2 → XP_018119704.1  brachyury-inducible homeobox 1, gene 2 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0VE51, A0A974HH10
      Related
      ENSXLAP00005010216.1, ENSXLAT00005010382.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases