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    delta delta protein [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 373299, updated on 14-Dec-2023

    Summary

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    Gene symbol
    delta
    Gene description
    delta protein
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145611.1 (35186000..35201201)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577290.1 (948435..963672)

    NW_022145611.1Genomic Context describing neighboring genes Neighboring gene constitutive coactivator of peroxisome proliferator-activated receptor gamma-like Neighboring gene constitutive coactivator of peroxisome proliferator-activated receptor gamma-like Neighboring gene ChaC glutathione specific gamma-glutamylcyclotransferase 1 Neighboring gene uncharacterized LOC105440438

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres. Revilla-i-Domingo R, et al. Dev Biol, 2004 Oct 15. PMID 15385170
    2. LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties. Sweet HC, et al. Development, 2002 Apr. PMID 11934860
    3. A large-scale analysis of mRNAs expressed by primary mesenchyme cells of the sea urchin embryo. Zhu X, et al. Development, 2001 Jul. PMID 11493577
    4. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results describe R11, a cis-regulatory element that is responsible for localizing the expression of delta by means of its response to the pmar1 repression system.
      Title: R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell communication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032370.1 → NP_001027542.1  delta protein

      Status: PROVISIONAL

      Source sequence(s)
      AY074792, DN580252, DN786044
      UniProtKB/TrEMBL
      A0A7M6UUZ3, Q8T4N9
      Conserved Domains (3) summary
      cd00054
      Location:291 → 329
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam01414
      Location:164 → 226
      DSL; Delta serrate ligand
      pfam07657
      Location:32 → 106
      MNNL; N terminus of Notch ligand

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145611.1 Reference Spur_5.0 Primary Assembly

      Range
      35186000..35201201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials