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    cod chitin oligosaccharide deacetylase [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1190182, updated on 31-Jan-2024

    Summary

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    Gene symbol
    cod
    Gene description
    chitin oligosaccharide deacetylase
    Locus tag
    VP_RS12935
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VP2638
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    Genomic context

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    Location:
    chromosome: 1
    Sequence:
    Chromosome: 1; NC_004603.1 (2788736..2790019)

    Chromosome 1 - NC_004603.1Genomic Context describing neighboring genes Neighboring gene PTS sugar transporter subunit IIC Neighboring gene PTS sugar transporter subunit IIB Neighboring gene tRNA-Leu Neighboring gene SDR family oxidoreductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004603.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The chitin catabolic cascade in the marine bacterium Vibrio cholerae: characterization of a unique chitin oligosaccharide deacetylase. Li X, et al. Glycobiology, 2007 Dec. PMID 17884842
    2. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
    3. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    chitin oligosaccharide deacetylase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004603.1 Reference assembly

      Range
      2788736..2790019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005478836.1 MULTISPECIES: chitin oligosaccharide deacetylase [Vibrio]

      See identical proteins and their annotated locations for WP_005478836.1

      UniProtKB/TrEMBL
      A0A0L8SEQ2, Q87LH4
      Conserved Domains (2) summary
      cd12214
      Location:335 → 378
      ChiA1_BD; chitin-binding domain of Chi A1-like proteins
      cl15692
      Location:28 → 331
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily
    Nucleotide Protein
    Heading Accession and Version

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