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    cod chitin oligosaccharide deacetylase [ Vibrio mimicus MB451 ]

    Gene ID: 57837668, updated on 15-Apr-2023

    Summary

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    Gene symbol
    cod
    Gene description
    chitin oligosaccharide deacetylase
    Locus tag
    VII_RS11605
    Gene type
    protein coding
    Organism
    Vibrio mimicus MB451 (strain: MB-451, nat-host: Homo sapiens)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VII_002509
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    Genomic context

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    NZ_ADAF01000001.1Genomic Context describing neighboring genes Neighboring gene PTS sugar transporter subunit IIC Neighboring gene PTS sugar transporter subunit IIB Neighboring gene BCCT family transporter Neighboring gene MarR family transcriptional regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_ADAF01000001.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The chitin catabolic cascade in the marine bacterium Vibrio cholerae: characterization of a unique chitin oligosaccharide deacetylase. Li X, et al. Glycobiology, 2007 Dec. PMID 17884842
    2. Comparative genomics of clinical and environmental Vibrio mimicus. Hasan NA, et al. Proc Natl Acad Sci U S A, 2010 Dec 7. PMID 21078967, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    chitin oligosaccharide deacetylase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_ADAF01000001.1 Reference assembly

      Range
      1572835..1574118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_000769198.1 chitin oligosaccharide deacetylase [Vibrio mimicus]

      See identical proteins and their annotated locations for WP_000769198.1

      Conserved Domains (2) summary
      cd12214
      Location:334 → 378
      ChiA1_BD; chitin-binding domain of Chi A1-like proteins
      cl15692
      Location:28 → 331
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily
    Nucleotide Protein
    Heading Accession and Version