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    alfA hypothetical protein [ Dictyostelium discoideum AX4 ]

    Gene ID: 8619691, updated on 11-Apr-2024

    Summary

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    Gene symbol
    alfA
    Gene description
    hypothetical protein
    Primary source
    dictyBase:DDB_G0274391
    Locus tag
    DDB_G0274391
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Dictyostelium discoideum AX4 (strain: AX4)
    Lineage
    Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
    Old locus tag
    DDBDRAFT_0167570; DDBDRAFT_0185016; DDB_0167570; DDB_0185016
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_007088.5 (4784888..4786574, complement)

    Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene peptidase C19 family protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007088.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cis-acting element responsible for early gene induction by extracellular cAMP in Dictyostelium discoideum. May T, et al. Mech Dev, 1991 Feb. PMID 1851628
    2. Purification and properties of a secreted and developmentally regulated alpha-L-fucosidase from Dictyostelium discoideum. Schopohl D, et al. J Biol Chem, 1992 Feb 5. PMID 1310316
    3. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
    4. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by dictyBase

    Function Evidence Code Pubs
    enables 1,6-alpha-L-fucosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables alpha-L-fucosidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables alpha-L-fucosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables alpha-L-fucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in fucose metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in fucose metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in fucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in glycoside catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within response to cAMP IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in extracellular region IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in lysosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007088.5 Reference assembly

      Range
      4784888..4786574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_639171.1 → XP_644263.1  hypothetical protein DDB_G0274391 [Dictyostelium discoideum AX4]

      See identical proteins and their annotated locations for XP_644263.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P10901, Q554R0
      Conserved Domains (3) summary
      smart00812
      Location:17 → 404
      Alpha_L_fucos; Alpha-L-fucosidase
      COG3669
      Location:47 → 368
      AfuC; Alpha-L-fucosidase [Carbohydrate transport and metabolism]
      pfam16757
      Location:374 → 458
      Fucosidase_C; Alpha-L-fucosidase C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q554R0.1

    Gene LinkOut

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